jgi.p|Nanoce1779_2|599232, mRNA_7575 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|599232
Unique Name	mRNA_7575
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2150
Alignment location	scaffold_20:291513..293900 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	599318
Track	FilteredModels2
ProteinId	599232

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_20	supercontig	scaffold_20:291513..293900 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599232	gene_7575	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599232	mRNA_7575-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7575	CDS_7575	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_20:291513..293900+
coding sequence from alignment at scaffold_20:291513..293900+

mRNA sequence

>mRNA_7575 ID=mRNA_7575|Name=jgi.p|Nanoce1779_2|599232|organism=Nannochloropsis oceanica|type=mRNA|length=2150bp
ACAGGAAGCTCGTCCTAGGCTTTGTAGAGAAGCCGACTGCGTGCGTCGGC
TATCCTGCAAAAGTGCCTCCACACGAGCACAACCCACATCACAAATTATG
GGGCGGGCAACAGCAGCAGCCGCTGTCGTGACCTTGGTGGCGTGCTTGGG
CAGCAGCACCATAACCAGCGCCAGTGCATTTGTCGTCATGCCCTTTTCCC
CGCGTTTGATAATGCCGCCGTCGTCGTTGTCAATGCGACCTGCTGCATCC
GAGAGATCAGCCTGTATCTCGCGACCCGCCAACAAGATTGTAGGGGCCCT
GCAGGCCGGCGCTGGCAGCGACAATGACAACAATGGCGGGAACAAGGACG
ACTTGTACTACCAGCGCTTTATGGGAATGAACGAGGGAGAGCCTACGGAC
GACTTACGTGTGGCAGCCGAGATTGCAGACATGGACCCGAGCACGATCGA
TTCGCTGCGACGTAGCATCTCAGTGGATGGTAAGGTGAACATGTCGCCAT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCTAATCCGTTCTATATCGGTGGG
AATAGTGGTGGCAGTAGCGGAAGTATTAGCAGTGGGATTGGAAGCGGTGC
CGGTGGATTCTTGGACTCTATGAAGAAGAAATCAGCAGCCAGCTTTTCGA
CTTTGGGTGGCGGGGCTGGAGGAGGAGGAGGAGGAATGGGAGGAGGAGGA
GGAATGAATTCGAATTTGCAAAAAGGCAGTCCAGATTTGATGATGTCAGG
GCCGAAGGTTTATATCATTCCCCAGAATCAGGGGGAGGCCCCATTGGAGA
TAAAGAGTTTGGCGCCCGGACAGAGAAGATCACAGAAAGGTGTGATTGCG
GAGATTCCCGGGAGGAGTTTTCCGAAGCGTCCTCGACGGGTGGATTTGTC
GGAGAAGATGGCCGAGGCTAAGCGCGCCATCCAAGAAGCCCCCACCCGCC
TCACGGAACTGCAAGTCCAGAATATCCGAAATGGCGCTGCCATGAACCCC
AATTTTAACAACCCTAACGGCCAAAACAACAACAATCAAAACAACAATAA
CAACGTCAACAATAACAGCAATGGGCAGCAGCAGCAGCAACAGAACCAGT
TTACCTTTCCGAGCTTCCCATCTCAGCAGCCGGTACAGCAGCAACCCAAA
TCCTCCCCTCCGTCCTCGGGGCGCAGCCGATCAAAGCGACGTGGCTACTC
TTCAGGGAGGGAACAACAAGGATCAAGGAGTCGCATGATGAATAGTAGGA
GAGCTTCTCCGGCGTCTGAATTTAAGTTTCCGCCGCTGCCGGCGTGGAGT
AAAGATTGGAGAGTGTGGGTAGGTGGCATTGCCGCTGTGTCGTTTTTCAC
GGCTTTGGTGAATTCCTTGAGTTACAGGAGTGAGTTGATGGTTATGCATG
AAAGTGAACGATGGGAAGGTGGGAGGGATGCGTTTATGTTGGAGAGGAAA
TTGGGGCAGCAGCAGCCATGTGTAGGGGACGCGGTAGAGCGGATGGTGGC
CTGAATATGAGTGAGAAAATTTGGAGAAGACGACGGGGGGCTACTATCGA
ATGAAAATGACGGGAAAAAGAAAGGGAAGGGGATGGCTGTGTAGGTAGTA
GCAGAATGAAGAAGAAGGGAACGCGAAAGGGAAGCAGCGGCAGCAGGTGC
AGCAGTGGTGGAAACGCATCAGCATAGTGGTTTCCTGAAAGTAGAGAGAG
TTATAGAAGAAGCAGACGCGCATTGTATACTTTGACAGCAGAAGATTTGA
GAACGAGGTGAATAAAGAGGACCACGAAAGCTTACAGAAGGAACAGAAAT
GAAAAAAACAAGGTGAACATGAATCATACAACAGGTGAAAATATGTGGTC
GGATCCAACAAACGCGCAGACTCTTTCATTCACCGGCACACCTTGCAGCT
CTTTCCATGGATGGAACAGTCAATCAATCTAATCCCCATTATACGCGCAT
GGTTACTTGTGACTTGACTCTTGGCAGCAGTAGAAGAAGGAAGAAAGAGA
AGATAGATGAAGACGAAGTTGTGCGAAGTACTGTCCTTTTTTTACTTGCC
CTGTTTGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGAGTGTGTGTGTGTGTTCCATTCTTTCTGTTTCACAGCTGATTTCTTT

protein sequence of jgi.p|Nanoce1779_2|599232

>mRNA_7575-protein ID=mRNA_7575-protein|Name=jgi.p|Nanoce1779_2|599232|organism=Nannochloropsis oceanica|type=polypeptide|length=469bp
MGRATAAAAVVTLVACLGSSTITSASAFVVMPFSPRLIMPPSSLSMRPAA
SERSACISRPANKIVGALQAGAGSDNDNNGGNKDDLYYQRFMGMNEGEPT
DDLRVAAEIADMDPSTIDSLRRSISVDGKVNMSPSSSSSSSSSSNPFYIG
GNSGGSSGSISSGIGSGAGGFLDSMKKKSAASFSTLGGGAGGGGGGMGGG
GGMNSNLQKGSPDLMMSGPKVYIIPQNQGEAPLEIKSLAPGQRRSQKGVI
AEIPGRSFPKRPRRVDLSEKMAEAKRAIQEAPTRLTELQVQNIRNGAAMN
PNFNNPNGQNNNNQNNNNNVNNNSNGQQQQQQNQFTFPSFPSQQPVQQQP
KSSPPSSGRSRSKRRGYSSGREQQGSRSRMMNSRRASPASEFKFPPLPAW
SKDWRVWVGGIAAVSFFTALVNSLSYRSELMVMHESERWEGGRDAFMLER
KLGQQQPCVGDAVERMVA*

mRNA from alignment at scaffold_20:291513..293900+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7575 ID=mRNA_7575|Name=jgi.p|Nanoce1779_2|599232|organism=Nannochloropsis oceanica|type=mRNA|length=2388bp|location=Sequence derived from alignment at scaffold_20:291513..293900+ (Nannochloropsis oceanica)
ACAGGAAGCTCGTCCTAGGCTTTGTAGAGAAGCCGACTGCGTGCGTCGGC
TATCCTGCAAAAGTGCCTCCACACGAGCACAACCCACATCACAAATTATG
GGGCGGGCAACAGCAGCAGCCGCTGTCGTGACCTTGGTGGCGTGCTTGGG
CAGCAGCACCATAACCAGCGCCAGTGCATTTGTCGTCATGCCCTTTTCCC
CGCGTTTGATAATGCCGCCGTCGTCGTTGTCAATGCGACCTGCTGCATCC
GAGAGATCAGCCTGTATCTCGCGACCCGCCAACAAGATTGTAGGGGCCCT
GCAGGCCGGCGCTGGCAGCGACAATGACAACAATGGCGGGAACAAGGACG
ACTTGTACTACCAGCGCTTTATGGGAATGAACGAGGGAGAGCCTACGGAC
GACTTACGTGTGGCAGCCGAGATTGCAGACATGGACCCGAGCACGATCGA
TTCGCTGCGACGTAGCATCTCAGTGGATGGTAAGGTGAACATGTCGCCAT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCTAATCCGTTCTATATCGGTGGG
AATAGTGGTGGCAGTAGCGGAAGTATTAGCAGTGGGATTGGAAGCGGTGC
CGGTGGATTCTTGGACTCTATGAAGAAGAAATCAGCAGCCAGCTTTTCGA
CTTTGGGTGGCGGGGCTGGAGGAGGAGGAGGAGGAATGGGAGGAGGAGGA
GGAATGAATTCGAATTTGCAAAAAGGCAGTCCAGATTTGATGATGTCAGG
GCCGAAGGTTTATATCATTCCCCAGAATCAGGGGGAGGCCCCATTGGAGA
TAAAGAGTTTGGCGCCCGGACAGAGAAGATCACAGAAAGGTGTGATTGCG
GAGATTCCCGGGAGGAGTTTTCCGAAGCGTCCTCGACGGGTGGATTTGTC
GGAGAAGGTACGTTTCGGCTGCGTGTATGAAACTTTGGAACGGGGAAAAT
CGAAAGAAAGGGATGTCCACCTGAGTGAGCGTAAGGTCGAGAGGTCGAAT
TTTACGAAAAAGGGAGATAAAGTTGTGAAGTTACGAGTATGCATGCATTT
CTGCACCCGTTCATAAGTGTAAGCGATTGAAACTATGTGTCTTTACCTCT
TCTCGTTCCCCCCTTTTCCTTTCTTTTCCTTTCCACCCCAAACAGATGGC
CGAGGCTAAGCGCGCCATCCAAGAAGCCCCCACCCGCCTCACGGAACTGC
AAGTCCAGAATATCCGAAATGGCGCTGCCATGAACCCCAATTTTAACAAC
CCTAACGGCCAAAACAACAACAATCAAAACAACAATAACAACGTCAACAA
TAACAGCAATGGGCAGCAGCAGCAGCAACAGAACCAGTTTACCTTTCCGA
GCTTCCCATCTCAGCAGCCGGTACAGCAGCAACCCAAATCCTCCCCTCCG
TCCTCGGGGCGCAGCCGATCAAAGCGACGTGGCTACTCTTCAGGGAGGGA
ACAACAAGGATCAAGGAGTCGCATGATGAATAGTAGGAGAGCTTCTCCGG
CGTCTGAATTTAAGTTTCCGCCGCTGCCGGCGTGGAGTAAAGATTGGAGA
GTGTGGGTAGGTGGCATTGCCGCTGTGTCGTTTTTCACGGCTTTGGTGAA
TTCCTTGAGTTACAGGAGTGAGTTGATGGTTATGCATGAAAGTGAACGAT
GGGAAGGTGGGAGGGATGCGTTTATGTTGGAGAGGAAATTGGGGCAGCAG
CAGCCATGTGTAGGGGACGCGGTAGAGCGGATGGTGGCCTGAATATGAGT
GAGAAAATTTGGAGAAGACGACGGGGGGCTACTATCGAATGAAAATGACG
GGAAAAAGAAAGGGAAGGGGATGGCTGTGTAGGTAGTAGCAGAATGAAGA
AGAAGGGAACGCGAAAGGGAAGCAGCGGCAGCAGGTGCAGCAGTGGTGGA
AACGCATCAGCATAGTGGTTTCCTGAAAGTAGAGAGAGTTATAGAAGAAG
CAGACGCGCATTGTATACTTTGACAGCAGAAGATTTGAGAACGAGGTGAA
TAAAGAGGACCACGAAAGCTTACAGAAGGAACAGAAATGAAAAAAACAAG
GTGAACATGAATCATACAACAGGTGAAAATATGTGGTCGGATCCAACAAA
CGCGCAGACTCTTTCATTCACCGGCACACCTTGCAGCTCTTTCCATGGAT
GGAACAGTCAATCAATCTAATCCCCATTATACGCGCATGGTTACTTGTGA
CTTGACTCTTGGCAGCAGTAGAAGAAGGAAGAAAGAGAAGATAGATGAAG
ACGAAGTTGTGCGAAGTACTGTCCTTTTTTTACTTGCCCTGTTTGTGTGT
GTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGTGTGTGT
GTGTGTTCCATTCTTTCTGTTTCACAGCTGATTTCTTT

Coding sequence (CDS) from alignment at scaffold_20:291513..293900+

>mRNA_7575 ID=mRNA_7575|Name=jgi.p|Nanoce1779_2|599232|organism=Nannochloropsis oceanica|type=CDS|length=2814bp|location=Sequence derived from alignment at scaffold_20:291513..293900+ (Nannochloropsis oceanica)
ATGGGGCGGGCAACAGCAGCAGCCGCTGTCGTGACCTTGGTGGCGTGCTT
GGGCAGCAGCACCATAACCAGCGCCAGTGCATTTGTCGTCATGCCCTTTT
CCCCGCGTTTGATAATGCCGCCGTCGTCGTTGTCAATGCGACCTGCTGCA
TCCGAGAGATCAGCCTGTATCTCGCGACCCGCCAACAAGATTGTAGGGGC
CCTGCAGGCCGGCGCTGGCAGCGACAATGACAACAATGGCGGGAACAAGG
ACGACTTGTACTACCAGCGCTTTATGGGAATGAACGAGGGAGAGCCTACG
GACGACTTACGTGTGGCAGCCGAGATTGCAGACATGGACCCGAGCACGAT
CGATTCGCTGCGACGTAGCATCTCAGTGGATGGTAAGGTGAACATGTCGC
CATCCTCCTCCTCCTCCTCCTCCTCCTCCTCTAATCCGTTCTATATCGGT
GGGAATAGTGGTGGCAGTAGCGGAAGTATTAGCAGTGGGATTGGAAGCGG
TGCCGGTGGATTCTTGGACTCTATGAAGAAGAAATCAGCAGCCAGCTTTT
CGACTTTGGGTGGCGGGGCTGGAGGAGGAGGAGGAGGAATGGGAGGAGGA
GGAGGAATGAATTCGAATTTGCAAAAAGGCAGTCCAGATTTGATGATGTC
AGGGCCGAAGGTTTATATCATTCCCCAGAATCAGGGGGAGGCCCCATTGG
AGATAAAGAGTTTGGCGCCCGGACAGAGAAGATCACAGAAAGGTGTGATT
GCGGAGATTCCCGGGAGGAGTTTTCCGAAGCGTCCTCGACGGGTGGATTT
GTCGGAGAAGATGGCCGAGGCTAAGCGCGCCATCCAAGAAGCCCCCACCC
GCCTCACGGAACTGCAAGTCCAGAATATCCGAAATGGCGCTGCCATGAAC
CCCAATTTTAACAACCCTAACGGCCAAAACAACAACAATCAAAACAACAA
TAACAACGTCAACAATAACAGCAATGGGCAGCAGCAGCAGCAACAGAACC
AGTTTACCTTTCCGAGCTTCCCATCTCAGCAGCCGGTACAGCAGCAACCC
AAATCCTCCCCTCCGTCCTCGGGGCGCAGCCGATCAAAGCGACGTGGCTA
CTCTTCAGGGAGGGAACAACAAGGATCAAGGAGTCGCATGATGAATAGTA
GGAGAGCTTCTCCGGCGTCTGAATTTAAGTTTCCGCCGCTGCCGGCGTGG
AGTAAAGATTGGAGAGTGTGGGTAGGTGGCATTGCCGCTGTGTCGTTTTT
CACGGCTTTGGTGAATTCCTTGAGTTACAGGAGTGAGTTGATGGTTATGC
ATGAAAGTGAACGATGGGAAGGTGGGAGGGATGCGTTTATGTTGGAGAGG
AAATTGGGGCAGCAGCAGCCATGTGTAGGGGACGCGGTAGAGCGGATGGT
GGCCTGAATGGGGCGGGCAACAGCAGCAGCCGCTGTCGTGACCTTGGTGG
CGTGCTTGGGCAGCAGCACCATAACCAGCGCCAGTGCATTTGTCGTCATG
CCCTTTTCCCCGCGTTTGATAATGCCGCCGTCGTCGTTGTCAATGCGACC
TGCTGCATCCGAGAGATCAGCCTGTATCTCGCGACCCGCCAACAAGATTG
TAGGGGCCCTGCAGGCCGGCGCTGGCAGCGACAATGACAACAATGGCGGG
AACAAGGACGACTTGTACTACCAGCGCTTTATGGGAATGAACGAGGGAGA
GCCTACGGACGACTTACGTGTGGCAGCCGAGATTGCAGACATGGACCCGA
GCACGATCGATTCGCTGCGACGTAGCATCTCAGTGGATGGTAAGGTGAAC
ATGTCGCCATCCTCCTCCTCCTCCTCCTCCTCCTCCTCTAATCCGTTCTA
TATCGGTGGGAATAGTGGTGGCAGTAGCGGAAGTATTAGCAGTGGGATTG
GAAGCGGTGCCGGTGGATTCTTGGACTCTATGAAGAAGAAATCAGCAGCC
AGCTTTTCGACTTTGGGTGGCGGGGCTGGAGGAGGAGGAGGAGGAATGGG
AGGAGGAGGAGGAATGAATTCGAATTTGCAAAAAGGCAGTCCAGATTTGA
TGATGTCAGGGCCGAAGGTTTATATCATTCCCCAGAATCAGGGGGAGGCC
CCATTGGAGATAAAGAGTTTGGCGCCCGGACAGAGAAGATCACAGAAAGG
TGTGATTGCGGAGATTCCCGGGAGGAGTTTTCCGAAGCGTCCTCGACGGG
TGGATTTGTCGGAGAAGATGGCCGAGGCTAAGCGCGCCATCCAAGAAGCC
CCCACCCGCCTCACGGAACTGCAAGTCCAGAATATCCGAAATGGCGCTGC
CATGAACCCCAATTTTAACAACCCTAACGGCCAAAACAACAACAATCAAA
ACAACAATAACAACGTCAACAATAACAGCAATGGGCAGCAGCAGCAGCAA
CAGAACCAGTTTACCTTTCCGAGCTTCCCATCTCAGCAGCCGGTACAGCA
GCAACCCAAATCCTCCCCTCCGTCCTCGGGGCGCAGCCGATCAAAGCGAC
GTGGCTACTCTTCAGGGAGGGAACAACAAGGATCAAGGAGTCGCATGATG
AATAGTAGGAGAGCTTCTCCGGCGTCTGAATTTAAGTTTCCGCCGCTGCC
GGCGTGGAGTAAAGATTGGAGAGTGTGGGTAGGTGGCATTGCCGCTGTGT
CGTTTTTCACGGCTTTGGTGAATTCCTTGAGTTACAGGAGTGAGTTGATG
GTTATGCATGAAAGTGAACGATGGGAAGGTGGGAGGGATGCGTTTATGTT
GGAGAGGAAATTGGGGCAGCAGCAGCCATGTGTAGGGGACGCGGTAGAGC
GGATGGTGGCCTGA

Synonyms

Publications