jgi.p|Nanoce1779_2|599228, mRNA_7574 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599228
Unique NamemRNA_7574
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1403
Alignment locationscaffold_20:289490..291145 -

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Properties
Property NameValue
TranscriptId599314
TrackFilteredModels2
ProteinId599228
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:289490..291145 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599228gene_7574Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599228mRNA_7574-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7574CDS_7574Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7574 ID=mRNA_7574|Name=jgi.p|Nanoce1779_2|599228|organism=Nannochloropsis oceanica|type=mRNA|length=1403bp
CAACAGGGCACATTACGACAGTGCCCGCAACCGTACTGCTGCATAGGCGC
AGCGGTGGTGGTTTGACCCTGAAATGCTATCCGAAAAAGACCAGTCCCAG
CTCTCGACCTCCTCCCCCCCCTCGATCCAAACACGATTTCTGCTCCTCCT
ACTCCTCCTGTTAGCCGCCATATCCACACACGTCGACTCTTTTTGGCATG
CCGCAGCGCCGTCACTATCCCAACGCGTGATAGCAAAAAGGATGGCAATT
CCTCCGACAATGTCCTCGGGTCGACGAACACTTCTCTCCTTCCTGCAAGA
GGAGCGTGCTGCCCAACCCACGTTGGTAGACGAGGACCTGCACCTGGTGC
TGGCCGCGATTGCGTCGGCGGTGAAGCGCATCAGCTACATGGTTCGACGA
GCAGGCATTGTGGACCTGACCGGCTTGTACACCACGGAGCACGGTGGAGA
AGTCACCCTTAACAAGGGCGGGGAGAAGCAAAAGAAGCTTGACGTCTTGG
CGAACGACATTCTTAAGGAGCATTTGCAAGATTGCGGGTATGTCGCTGCC
TTTGCCTCAGAGGAAGAAGATGGAGTGATTCCTTTGCGGACCGGTGGCAA
GTTTGTGGTGGTGCTTGACCCTTTAGATGGCTCGTCGAACGTAGACGCAT
CCATTCCCACCGGCACCATCTTTGGAGTCTATCGCAGCCTAGGCGACAGC
CCCGCCCAACTCCAAGCCGGGGCGCTTCAAGCTGGCAAACATCAAGTTGC
TGCTGGGTATTGCCTCTTTTCGGCGGCCACGCTGCTCGTGCTGACAATGG
GTAGAGGCACAGGCACGCATGTTTTGACCCTTGATCATCACATTGGGGAC
TTCGTCTTGACTACCCGCCGTCTCCGACTCCCTTTGCGGGGTTCTACTTA
TTCATTAAATGAGGCTCGATTCGGTGATTGGCCCGAGGGCTTACAGCGTT
ATGTCACGGACATGAAGCTGGGCAGGAATCAAAAACAGACGCCGTATGAT
TTGGTGTATGTTTGTTCCTTAGTGGCAGACGCGCATTGGGTTTTGATTCG
AGGGGGCATGGCATGTAACCCTAGGAGTCATTTGCGGTTGTGCTTTGAGG
GTAACCCTATGAGCTTGGTGACCGAAGAAGCAGGCGGCCTGGCAAGCTCA
GGTGACGGGCCTCGCATCTTGAACATTGTACCTGATGCCATTCACCAACG
CACGCCTGTCTTCTTGGGTAGTCGGGACGATATCTTGGAATTGGAGTCCT
ATGGCGATGTTGCTCAGAAACATAACCCGGGTTACGCATAAATGAAAAGG
GAGCTGAGGGGGAAATGAGATGCTGAGAAGAGAGGAATTAAGTGAATCAA
ATGTAAGAAAGGAGATCCCAAATGTGAAAATGTACCAGAGTCAGGTGTTT
TAA
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protein sequence of jgi.p|Nanoce1779_2|599228

>mRNA_7574-protein ID=mRNA_7574-protein|Name=jgi.p|Nanoce1779_2|599228|organism=Nannochloropsis oceanica|type=polypeptide|length=406bp
MLSEKDQSQLSTSSPPSIQTRFLLLLLLLLAAISTHVDSFWHAAAPSLSQ
RVIAKRMAIPPTMSSGRRTLLSFLQEERAAQPTLVDEDLHLVLAAIASAV
KRISYMVRRAGIVDLTGLYTTEHGGEVTLNKGGEKQKKLDVLANDILKEH
LQDCGYVAAFASEEEDGVIPLRTGGKFVVVLDPLDGSSNVDASIPTGTIF
GVYRSLGDSPAQLQAGALQAGKHQVAAGYCLFSAATLLVLTMGRGTGTHV
LTLDHHIGDFVLTTRRLRLPLRGSTYSLNEARFGDWPEGLQRYVTDMKLG
RNQKQTPYDLVYVCSLVADAHWVLIRGGMACNPRSHLRLCFEGNPMSLVT
EEAGGLASSGDGPRILNIVPDAIHQRTPVFLGSRDDILELESYGDVAQKH
NPGYA*
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mRNA from alignment at scaffold_20:289490..291145-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7574 ID=mRNA_7574|Name=jgi.p|Nanoce1779_2|599228|organism=Nannochloropsis oceanica|type=mRNA|length=1656bp|location=Sequence derived from alignment at scaffold_20:289490..291145- (Nannochloropsis oceanica)
CAACAGGGCACATTACGACAGTGCCCGCAACCGTACTGCTGCATAGGCGC
AGCGGTGGTGGTTTGACCCTGAAATGCTATCCGAAAAAGACCAGTCCCAG
CTCTCGACCTCCTCCCCCCCCTCGATCCAAACACGATTTCTGCTCCTCCT
ACTCCTCCTGTTAGCCGCCATATCCACACACGTCGACTCTTTTTGGCATG
CCGCAGCGCCGTCACTATCCCAACGCGTGATAGCAAAAAGGATGGCAATT
CCTCCGACAATGTCCTCGGGTCGACGAACACTTCTCTCCTTCCTGCAAGA
GGAGCGTGCTGCCCAACCCACGTTGGTAGACGAGGACCTGCACCTGGTGC
TGGCCGCGATTGCGTCGGCGGTGAAGCGCATCAGCTACATGGTTCGACGA
GCAGGCATTGTGGACCTGACCGGCTTGTACACCACGGAGCACGGTGGAGA
AGTCACCCTTAACAAGGGCGGGGAGAAGCAAAAGAAGCTTGACGTCTTGG
CGAACGACATTCTTAAGGAGCATTTGCAAGATTGCGGGTATGTCGCTGCC
TTTGCCTCAGAGGAAGAAGATGGAGTGATTCCTTTGCGGACCGGTGGCAA
GTTTGTGGTGGTGCTTGACCCTTTAGATGGCTCGTCGAACGTAGACGCAT
CCATTCCCACCGGCACCATCTTTGGAGTCTATCGCAGCCTAGGCGACAGC
CCCGCCCAACTCCAAGCCGGGGCGCTTCAAGCTGGCAAACATCAAGTTGC
TGCTGGGTATTGCCTCTTTTCGGCGGCCACGCTGCTCGTGCTGACAATGG
GTAGAGGCACAGGCACGCATGTTTTGACCCTTGATCATCACATTGGGGAC
TTCGTCTTGACTACCCGCCGTCTCCGACTCCCTTTGCGGGGTTCTACTTA
TTCATTAAATGAGGCTCGATTCGGTGATTGGCCCGAGGGCTTACAGCGTT
ATGTCACGGACATGAAGCTGGGCAGGAATCAAAAACAGACGCCGTATGAT
TTGGTGTATGTTTGTTCCTTAGTGGCAGACGCGCATTGGGTTTTGATTCG
AGGGGGCATGGCATGTAACCCTAGGAGTCATTTGCGGTTGTGCTTTGAGG
GTAACCCTATGAGCTTGGTACGTATGAGGTTGGGGGTTGGCGGTATTGAT
TGCATTTCTTTGGAGCTTGCAGGTTGTGTTTGTGTTTGTACAACTGTCTC
GGTAGGCATGTTCCGGGTTTGTACTCACTATTTCACTTTTTGGGGTGCGG
TGAGATATACGTGCTAATGAAATAATTTTATAATAACATACCCCTGGTTT
TCCATCATTTATCGTCTAAATCAATGCTACCCTTCTTCTTGTCCCCTCAC
TACACCTCACAATACAACAGGTGACCGAAGAAGCAGGCGGCCTGGCAAGC
TCAGGTGACGGGCCTCGCATCTTGAACATTGTACCTGATGCCATTCACCA
ACGCACGCCTGTCTTCTTGGGTAGTCGGGACGATATCTTGGAATTGGAGT
CCTATGGCGATGTTGCTCAGAAACATAACCCGGGTTACGCATAAATGAAA
AGGGAGCTGAGGGGGAAATGAGATGCTGAGAAGAGAGGAATTAAGTGAAT
CAAATGTAAGAAAGGAGATCCCAAATGTGAAAATGTACCAGAGTCAGGTG
TTTTAA
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Coding sequence (CDS) from alignment at scaffold_20:289490..291145-

>mRNA_7574 ID=mRNA_7574|Name=jgi.p|Nanoce1779_2|599228|organism=Nannochloropsis oceanica|type=CDS|length=2436bp|location=Sequence derived from alignment at scaffold_20:289490..291145- (Nannochloropsis oceanica)
GTGACCGAAGAAGCAGGCGGCCTGGCAAGCTCAGGTGACGGGCCTCGCAT
CTTGAACATTGTACCTGATGCCATTCACCAACGCACGCCTGTCTTCTTGG
GTAGTCGGGACGATATCTTGGAATTGGAGTCCTATGGCGATGTTGCTCAG
AAACATAACCCGGGTTACGCATAAATGCTATCCGAAAAAGACCAGTCCCA
GCTCTCGACCTCCTCCCCCCCCTCGATCCAAACACGATTTCTGCTCCTCC
TACTCCTCCTGTTAGCCGCCATATCCACACACGTCGACTCTTTTTGGCAT
GCCGCAGCGCCGTCACTATCCCAACGCGTGATAGCAAAAAGGATGGCAAT
TCCTCCGACAATGTCCTCGGGTCGACGAACACTTCTCTCCTTCCTGCAAG
AGGAGCGTGCTGCCCAACCCACGTTGGTAGACGAGGACCTGCACCTGGTG
CTGGCCGCGATTGCGTCGGCGGTGAAGCGCATCAGCTACATGGTTCGACG
AGCAGGCATTGTGGACCTGACCGGCTTGTACACCACGGAGCACGGTGGAG
AAGTCACCCTTAACAAGGGCGGGGAGAAGCAAAAGAAGCTTGACGTCTTG
GCGAACGACATTCTTAAGGAGCATTTGCAAGATTGCGGGTATGTCGCTGC
CTTTGCCTCAGAGGAAGAAGATGGAGTGATTCCTTTGCGGACCGGTGGCA
AGTTTGTGGTGGTGCTTGACCCTTTAGATGGCTCGTCGAACGTAGACGCA
TCCATTCCCACCGGCACCATCTTTGGAGTCTATCGCAGCCTAGGCGACAG
CCCCGCCCAACTCCAAGCCGGGGCGCTTCAAGCTGGCAAACATCAAGTTG
CTGCTGGGTATTGCCTCTTTTCGGCGGCCACGCTGCTCGTGCTGACAATG
GGTAGAGGCACAGGCACGCATGTTTTGACCCTTGATCATCACATTGGGGA
CTTCGTCTTGACTACCCGCCGTCTCCGACTCCCTTTGCGGGGTTCTACTT
ATTCATTAAATGAGGCTCGATTCGGTGATTGGCCCGAGGGCTTACAGCGT
TATGTCACGGACATGAAGCTGGGCAGGAATCAAAAACAGACGCCGTATGA
TTTGGTGTATGTTTGTTCCTTAGTGGCAGACGCGCATTGGGTTTTGATTC
GAGGGGGCATGGCATGTAACCCTAGGAGTCATTTGCGGTTGTGCTTTGAG
GGTAACCCTATGAGCTTGGTGACCGAAGAAGCAGGCGGCCTGGCAAGCTC
AGGTGACGGGCCTCGCATCTTGAACATTGTACCTGATGCCATTCACCAAC
GCACGCCTGTCTTCTTGGGTAGTCGGGACGATATCTTGGAATTGGAGTCC
TATGGCGATGTTGCTCAGAAACATAACCCGGGTTACGCATAAATGCTATC
CGAAAAAGACCAGTCCCAGCTCTCGACCTCCTCCCCCCCCTCGATCCAAA
CACGATTTCTGCTCCTCCTACTCCTCCTGTTAGCCGCCATATCCACACAC
GTCGACTCTTTTTGGCATGCCGCAGCGCCGTCACTATCCCAACGCGTGAT
AGCAAAAAGGATGGCAATTCCTCCGACAATGTCCTCGGGTCGACGAACAC
TTCTCTCCTTCCTGCAAGAGGAGCGTGCTGCCCAACCCACGTTGGTAGAC
GAGGACCTGCACCTGGTGCTGGCCGCGATTGCGTCGGCGGTGAAGCGCAT
CAGCTACATGGTTCGACGAGCAGGCATTGTGGACCTGACCGGCTTGTACA
CCACGGAGCACGGTGGAGAAGTCACCCTTAACAAGGGCGGGGAGAAGCAA
AAGAAGCTTGACGTCTTGGCGAACGACATTCTTAAGGAGCATTTGCAAGA
TTGCGGGTATGTCGCTGCCTTTGCCTCAGAGGAAGAAGATGGAGTGATTC
CTTTGCGGACCGGTGGCAAGTTTGTGGTGGTGCTTGACCCTTTAGATGGC
TCGTCGAACGTAGACGCATCCATTCCCACCGGCACCATCTTTGGAGTCTA
TCGCAGCCTAGGCGACAGCCCCGCCCAACTCCAAGCCGGGGCGCTTCAAG
CTGGCAAACATCAAGTTGCTGCTGGGTATTGCCTCTTTTCGGCGGCCACG
CTGCTCGTGCTGACAATGGGTAGAGGCACAGGCACGCATGTTTTGACCCT
TGATCATCACATTGGGGACTTCGTCTTGACTACCCGCCGTCTCCGACTCC
CTTTGCGGGGTTCTACTTATTCATTAAATGAGGCTCGATTCGGTGATTGG
CCCGAGGGCTTACAGCGTTATGTCACGGACATGAAGCTGGGCAGGAATCA
AAAACAGACGCCGTATGATTTGGTGTATGTTTGTTCCTTAGTGGCAGACG
CGCATTGGGTTTTGATTCGAGGGGGCATGGCATGTAACCCTAGGAGTCAT
TTGCGGTTGTGCTTTGAGGGTAACCCTATGAGCTTG
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Synonyms
Publications