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Properties
| Property Name | Value |
|---|
| TranscriptId | 159993 |
| Track | FilteredModels2 |
| ProteinId | 159907 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_20 | supercontig | scaffold_20:286782..288837 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_7573 ID=mRNA_7573|Name=jgi.p|Nanoce1779_2|159907|organism=Nannochloropsis oceanica|type=mRNA|length=1484bp
CCATCCTCCGCTCCCCAGACCAGCTTCAGGTAGCAACCTTCGAAGAGCAG
CAGCAGCAGCAGCAACTCCAACTACAGCAGCAACAAGAACTTTATCCCCA
CGCCAAGTCCGAGCCACCAAACACCCTGACCATCTCTCCGCACATGCAGC
AACTGCAGCACCAGCAGGAGCAACTATTTATCCCCATGACTAGTCCCAAC
AGCCACACAAGCCGAAATCAGCATCAGCAGGACGACGATGACCAAGACTC
GCTACAGGGAGGGGGAGGAGGGGTGTACCAACAAGGGCAAATGAACAGCT
TGCCCCAGGCCTTCGAGAAGAAGCTGCGACGGCTGGAGAAGAACCGAGAG
TCAGCTCGTGAATGTCGAAGGAGGAAGAAAGAGCACGTGGTGGAGCTCCA
GAAGCAGGTAGCCCTCCTTGAGGCGGAGAACTTGAAGTTGAAGCTGCAAC
TCAAGGTGGGAGAGGAGAGCCAGGCGCAGGAGCGGCAGGAGAAGGGTCGG
ATAACTAAAAAGCTGGACGATATGGTGAAAACGGGCGCGAGTGAGTCAGA
CATCTGGCAGACGATCGATATGCTTAAGGAGAGGTACTCGGACTACGGCA
GCGATCGACGCTCTGCCATTGAGTTTCACACCAACCAGCTCGAGAAGCTC
CTCCTCCCCACCAAACTCACCAAGCTCTGCATGTGGATGCTCTTCAACAT
GGGCGACGAGAACGGTCAAACTTTATCTCCGGTCTCCGCCCCCACTCTTC
TCCCTTCTCCCTCTGCCCACGGCAAACCCGAGAATACTTCCCCCCCCTCC
TCCGCTACTGCTACTGATGCTGGTGCCCAAGCCGCGGCACGGCATCTTTG
GTCGATTCTCTCAGAAGAACTGCAGGTAACACCAGATCAGCAAGCGTCCC
TCTTAGAGCACCGGGGCAGCGTAGTCGCAATGGACGCTGACTTAGACGTA
ACCGCAGGCATGCTCCGCGATCTTCGCGCCCTGATCGACGATAAAAACTC
GAGTCTGGATCAGGAGCTGCAGGAGGTGCAGAAGATCCTCACTCCCACTC
AAACAGCCAAGTTTATTCTATGGATTACGCGGAACCCTGCTTGTATGCAC
ATGCTCAATCAGTTATGGCGGGCCGTATATGAGCGTTCCGAGGGGGGAGG
AGGAGGAGGAGGAAGACAAGGAGGAGGACAAGGCGGACGACATGGAGGTG
GAGGGAATTTGGGAGGGTTTAGTGGTCATCATCAATGGAGGACCATCGCT
CCGCAAGCGGCTGCTCCTGCTGCTGCGCTTGGAGCTGGGGGAGGTACGAT
CAACGGCAGTATCGGTAGCAGCATGAGTAGTAGCAGTGCCAGTATTGGAG
GTGGGAAGGCGCCGTCACCAGCCCAGCTGCAAGGGTCGTTGATATAAATC
AAGAATTAACGCAGGAATTTTACAGAAGGGAAAGTGTGATGGGTCTGAAA
AGAGGAAGGGAAATTGTCATATGAAGCGAAATAC back to topprotein sequence of jgi.p|Nanoce1779_2|159907 >mRNA_7573-protein ID=mRNA_7573-protein|Name=jgi.p|Nanoce1779_2|159907|organism=Nannochloropsis oceanica|type=polypeptide|length=418bp
MQQLQHQQEQLFIPMTSPNSHTSRNQHQQDDDDQDSLQGGGGGVYQQGQM
NSLPQAFEKKLRRLEKNRESARECRRRKKEHVVELQKQVALLEAENLKLK
LQLKVGEESQAQERQEKGRITKKLDDMVKTGASESDIWQTIDMLKERYSD
YGSDRRSAIEFHTNQLEKLLLPTKLTKLCMWMLFNMGDENGQTLSPVSAP
TLLPSPSAHGKPENTSPPSSATATDAGAQAAARHLWSILSEELQVTPDQQ
ASLLEHRGSVVAMDADLDVTAGMLRDLRALIDDKNSSLDQELQEVQKILT
PTQTAKFILWITRNPACMHMLNQLWRAVYERSEGGGGGGGRQGGGQGGRH
GGGGNLGGFSGHHQWRTIAPQAAAPAAALGAGGGTINGSIGSSMSSSSAS
IGGGKAPSPAQLQGSLI* back to topmRNA from alignment at scaffold_20:286782..288837- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_7573 ID=mRNA_7573|Name=jgi.p|Nanoce1779_2|159907|organism=Nannochloropsis oceanica|type=mRNA|length=2056bp|location=Sequence derived from alignment at scaffold_20:286782..288837- (Nannochloropsis oceanica)
CCATCCTCCGCTCCCCAGACCAGCTTCAGGTAGCAACCTTCGAAGAGGTA
CGCAAGCAGAGGGCGAGAGGGGAACCACATGTTGCGTCGTGTAACCTTTG
CTCATTATTTGGTGATGTGATGATAACATTGTGCGTCTAATCCCACCAAG
CTCTTGACTCTCCTCTCTTGTGCCCCGATTTCCTCCTTGCACTCACCCCA
ACATCTACCACCGGCCATCACATAGTCACATCCAATTCATCCCTACGTCT
CCAGCAGCAGCAGCAGCAGCAACTCCAACTACAGCAGCAACAAGAACTTT
ATCCCCACGCCAAGTCCGAGCCACCAAACACCCTGACCATCTCTCCGCAC
ATGCAGCAACTGCAGCACCAGCAGGAGCAACTATTTATCCCCATGACTAG
TCCCAACAGCCACACAAGCCGAAATCAGCATCAGCAGGACGACGATGACC
AAGACTCGCTACAGGGAGGGGGAGGAGGGGTGTACCAACAAGGGCAAATG
AACAGCTTGCCCCAGGCCTTCGAGAAGAAGCTGCGACGGCTGGAGAAGAA
CCGAGAGTCAGCTCGTGAATGTCGAAGGAGGAAGAAAGAGCACGTGGTGG
AGCTCCAGAAGCAGGTAGCCCTCCTTGAGGCGGAGAACTTGAAGTTGAAG
CTGCAACTCAAGGTGGGAGAGGAGAGCCAGGCGCAGGAGCGGCAGGAGAA
GGGTCGGATAACTAAAAAGCTGGACGATATGGTACGCCCTGCCTTCTGTC
TTAATATCGGGGGGAAGTGGGTCGCCTCGCAATCTGTCATGTCTATCAAG
GCTTTGTGCGAGCTCTGTCGTCTTCCAGTCGGCAGATATTCCCTTGTAAC
CTCGATCATCTGGCCGGGGAGCATCGCGTCGTTTTTACTTTCCATTGCTC
CCCACTTCTTCCTCTCTCTTCAACAGGTGAAAACGGGCGCGAGTGAGTCA
GACATCTGGCAGACGATCGATATGCTTAAGGAGAGGTACTCGGACTACGG
CAGCGATCGACGCTCTGCCATTGAGTTTCACACCAACCAGCTCGAGAAGG
TACGCGCGTGGTGGGAGACTAGGGAGAGAGGAAGGAAGAGAGAACAATTA
TTCACTTGTTTTGTTCTTTTCTAGAAGACTAATCCAGTCCTTGCTTTCAT
TATACCTGAATCTTTTTCTCACTGTTTTGCCGCCCACTTCTCCTCCTTCC
TTCCCTTGCACCCCTGCAGCTCCTCCTCCCCACCAAACTCACCAAGCTCT
GCATGTGGATGCTCTTCAACATGGGCGACGAGAACGGTCAAACTTTATCT
CCGGTCTCCGCCCCCACTCTTCTCCCTTCTCCCTCTGCCCACGGCAAACC
CGAGAATACTTCCCCCCCCTCCTCCGCTACTGCTACTGATGCTGGTGCCC
AAGCCGCGGCACGGCATCTTTGGTCGATTCTCTCAGAAGAACTGCAGGTA
ACACCAGATCAGCAAGCGTCCCTCTTAGAGCACCGGGGCAGCGTAGTCGC
AATGGACGCTGACTTAGACGTAACCGCAGGCATGCTCCGCGATCTTCGCG
CCCTGATCGACGATAAAAACTCGAGTCTGGATCAGGAGCTGCAGGAGGTG
CAGAAGATCCTCACTCCCACTCAAACAGCCAAGTTTATTCTATGGATTAC
GCGGAACCCTGCTTGTATGCACATGCTCAATCAGTTATGGCGGGCCGTAT
ATGAGCGTTCCGAGGGGGGAGGAGGAGGAGGAGGAAGACAAGGAGGAGGA
CAAGGCGGACGACATGGAGGTGGAGGGAATTTGGGAGGGTTTAGTGGTCA
TCATCAATGGAGGACCATCGCTCCGCAAGCGGCTGCTCCTGCTGCTGCGC
TTGGAGCTGGGGGAGGTACGATCAACGGCAGTATCGGTAGCAGCATGAGT
AGTAGCAGTGCCAGTATTGGAGGTGGGAAGGCGCCGTCACCAGCCCAGCT
GCAAGGGTCGTTGATATAAATCAAGAATTAACGCAGGAATTTTACAGAAG
GGAAAGTGTGATGGGTCTGAAAAGAGGAAGGGAAATTGTCATATGAAGCG
AAATAC back to topCoding sequence (CDS) from alignment at scaffold_20:286782..288837- >mRNA_7573 ID=mRNA_7573|Name=jgi.p|Nanoce1779_2|159907|organism=Nannochloropsis oceanica|type=CDS|length=3762bp|location=Sequence derived from alignment at scaffold_20:286782..288837- (Nannochloropsis oceanica)
CTCCTCCTCCCCACCAAACTCACCAAGCTCTGCATGTGGATGCTCTTCAA
CATGGGCGACGAGAACGGTCAAACTTTATCTCCGGTCTCCGCCCCCACTC
TTCTCCCTTCTCCCTCTGCCCACGGCAAACCCGAGAATACTTCCCCCCCC
TCCTCCGCTACTGCTACTGATGCTGGTGCCCAAGCCGCGGCACGGCATCT
TTGGTCGATTCTCTCAGAAGAACTGCAGGTAACACCAGATCAGCAAGCGT
CCCTCTTAGAGCACCGGGGCAGCGTAGTCGCAATGGACGCTGACTTAGAC
GTAACCGCAGGCATGCTCCGCGATCTTCGCGCCCTGATCGACGATAAAAA
CTCGAGTCTGGATCAGGAGCTGCAGGAGGTGCAGAAGATCCTCACTCCCA
CTCAAACAGCCAAGTTTATTCTATGGATTACGCGGAACCCTGCTTGTATG
CACATGCTCAATCAGTTATGGCGGGCCGTATATGAGCGTTCCGAGGGGGG
AGGAGGAGGAGGAGGAAGACAAGGAGGAGGACAAGGCGGACGACATGGAG
GTGGAGGGAATTTGGGAGGGTTTAGTGGTCATCATCAATGGAGGACCATC
GCTCCGCAAGCGGCTGCTCCTGCTGCTGCGCTTGGAGCTGGGGGAGGTAC
GATCAACGGCAGTATCGGTAGCAGCATGAGTAGTAGCAGTGCCAGTATTG
GAGGTGGGAAGGCGCCGTCACCAGCCCAGCTGCAAGGGTCGTTGATATAA
GTGAAAACGGGCGCGAGTGAGTCAGACATCTGGCAGACGATCGATATGCT
TAAGGAGAGGTACTCGGACTACGGCAGCGATCGACGCTCTGCCATTGAGT
TTCACACCAACCAGCTCGAGAAGATGCAGCAACTGCAGCACCAGCAGGAG
CAACTATTTATCCCCATGACTAGTCCCAACAGCCACACAAGCCGAAATCA
GCATCAGCAGGACGACGATGACCAAGACTCGCTACAGGGAGGGGGAGGAG
GGGTGTACCAACAAGGGCAAATGAACAGCTTGCCCCAGGCCTTCGAGAAG
AAGCTGCGACGGCTGGAGAAGAACCGAGAGTCAGCTCGTGAATGTCGAAG
GAGGAAGAAAGAGCACGTGGTGGAGCTCCAGAAGCAGGTAGCCCTCCTTG
AGGCGGAGAACTTGAAGTTGAAGCTGCAACTCAAGGTGGGAGAGGAGAGC
CAGGCGCAGGAGCGGCAGGAGAAGGGTCGGATAACTAAAAAGCTGGACGA
TATGCTCCTCCTCCCCACCAAACTCACCAAGCTCTGCATGTGGATGCTCT
TCAACATGGGCGACGAGAACGGTCAAACTTTATCTCCGGTCTCCGCCCCC
ACTCTTCTCCCTTCTCCCTCTGCCCACGGCAAACCCGAGAATACTTCCCC
CCCCTCCTCCGCTACTGCTACTGATGCTGGTGCCCAAGCCGCGGCACGGC
ATCTTTGGTCGATTCTCTCAGAAGAACTGCAGGTAACACCAGATCAGCAA
GCGTCCCTCTTAGAGCACCGGGGCAGCGTAGTCGCAATGGACGCTGACTT
AGACGTAACCGCAGGCATGCTCCGCGATCTTCGCGCCCTGATCGACGATA
AAAACTCGAGTCTGGATCAGGAGCTGCAGGAGGTGCAGAAGATCCTCACT
CCCACTCAAACAGCCAAGTTTATTCTATGGATTACGCGGAACCCTGCTTG
TATGCACATGCTCAATCAGTTATGGCGGGCCGTATATGAGCGTTCCGAGG
GGGGAGGAGGAGGAGGAGGAAGACAAGGAGGAGGACAAGGCGGACGACAT
GGAGGTGGAGGGAATTTGGGAGGGTTTAGTGGTCATCATCAATGGAGGAC
CATCGCTCCGCAAGCGGCTGCTCCTGCTGCTGCGCTTGGAGCTGGGGGAG
GTACGATCAACGGCAGTATCGGTAGCAGCATGAGTAGTAGCAGTGCCAGT
ATTGGAGGTGGGAAGGCGCCGTCACCAGCCCAGCTGCAAGGGTCGTTGAT
ATAAGTGAAAACGGGCGCGAGTGAGTCAGACATCTGGCAGACGATCGATA
TGCTTAAGGAGAGGTACTCGGACTACGGCAGCGATCGACGCTCTGCCATT
GAGTTTCACACCAACCAGCTCGAGAAGATGCAGCAACTGCAGCACCAGCA
GGAGCAACTATTTATCCCCATGACTAGTCCCAACAGCCACACAAGCCGAA
ATCAGCATCAGCAGGACGACGATGACCAAGACTCGCTACAGGGAGGGGGA
GGAGGGGTGTACCAACAAGGGCAAATGAACAGCTTGCCCCAGGCCTTCGA
GAAGAAGCTGCGACGGCTGGAGAAGAACCGAGAGTCAGCTCGTGAATGTC
GAAGGAGGAAGAAAGAGCACGTGGTGGAGCTCCAGAAGCAGGTAGCCCTC
CTTGAGGCGGAGAACTTGAAGTTGAAGCTGCAACTCAAGGTGGGAGAGGA
GAGCCAGGCGCAGGAGCGGCAGGAGAAGGGTCGGATAACTAAAAAGCTGG
ACGATATGCTCCTCCTCCCCACCAAACTCACCAAGCTCTGCATGTGGATG
CTCTTCAACATGGGCGACGAGAACGGTCAAACTTTATCTCCGGTCTCCGC
CCCCACTCTTCTCCCTTCTCCCTCTGCCCACGGCAAACCCGAGAATACTT
CCCCCCCCTCCTCCGCTACTGCTACTGATGCTGGTGCCCAAGCCGCGGCA
CGGCATCTTTGGTCGATTCTCTCAGAAGAACTGCAGGTAACACCAGATCA
GCAAGCGTCCCTCTTAGAGCACCGGGGCAGCGTAGTCGCAATGGACGCTG
ACTTAGACGTAACCGCAGGCATGCTCCGCGATCTTCGCGCCCTGATCGAC
GATAAAAACTCGAGTCTGGATCAGGAGCTGCAGGAGGTGCAGAAGATCCT
CACTCCCACTCAAACAGCCAAGTTTATTCTATGGATTACGCGGAACCCTG
CTTGTATGCACATGCTCAATCAGTTATGGCGGGCCGTATATGAGCGTTCC
GAGGGGGGAGGAGGAGGAGGAGGAAGACAAGGAGGAGGACAAGGCGGACG
ACATGGAGGTGGAGGGAATTTGGGAGGGTTTAGTGGTCATCATCAATGGA
GGACCATCGCTCCGCAAGCGGCTGCTCCTGCTGCTGCGCTTGGAGCTGGG
GGAGGTACGATCAACGGCAGTATCGGTAGCAGCATGAGTAGTAGCAGTGC
CAGTATTGGAGGTGGGAAGGCGCCGTCACCAGCCCAGCTGCAAGGGTCGT
TGATATAAGTGAAAACGGGCGCGAGTGAGTCAGACATCTGGCAGACGATC
GATATGCTTAAGGAGAGGTACTCGGACTACGGCAGCGATCGACGCTCTGC
CATTGAGTTTCACACCAACCAGCTCGAGAAGATGCAGCAACTGCAGCACC
AGCAGGAGCAACTATTTATCCCCATGACTAGTCCCAACAGCCACACAAGC
CGAAATCAGCATCAGCAGGACGACGATGACCAAGACTCGCTACAGGGAGG
GGGAGGAGGGGTGTACCAACAAGGGCAAATGAACAGCTTGCCCCAGGCCT
TCGAGAAGAAGCTGCGACGGCTGGAGAAGAACCGAGAGTCAGCTCGTGAA
TGTCGAAGGAGGAAGAAAGAGCACGTGGTGGAGCTCCAGAAGCAGGTAGC
CCTCCTTGAGGCGGAGAACTTGAAGTTGAAGCTGCAACTCAAGGTGGGAG
AGGAGAGCCAGGCGCAGGAGCGGCAGGAGAAGGGTCGGATAACTAAAAAG
CTGGACGATATG back to top
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