jgi.p|Nanoce1779_2|159892, mRNA_7572 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|159892
Unique NamemRNA_7572
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length471
Alignment locationscaffold_20:286310..286780 -

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Properties
Property NameValue
TranscriptId159978
TrackFilteredModels2
ProteinId159892
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:286310..286780 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|159892gene_7572Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|159892mRNA_7572-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7572CDS_7572Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7572 ID=mRNA_7572|Name=jgi.p|Nanoce1779_2|159892|organism=Nannochloropsis oceanica|type=mRNA|length=471bp
CGGCCTTACAGTGCACACTGGCTTACTTTCTTTCTGAGAGGTAGACTCAA
TAAAATGAGTTTTTCAGTATCCCTGTGTGTGTGGATGGGCGCGTGCATAT
GTTCGAGTGTCTGTGTGCTGCGAGTGTTCTCCCTTTCGTCCTCGCTCTCT
TGATAGAGCGAGTTCGTTCGATCCATATCTTTAAATCACAACCACCGTCA
ACATGCTCCGGTTTACCAGCACACACTCTTCCCCCCTTCCTCCCTCCCTT
TCCATCAACCTCTTTCCCCTGCACCGCGCACCCCTTTCTAATTTCCCATT
TCATCAGTGTGTCCTTTGGTGTGACCGACCAGCAGCAAAATTTGAAAACT
TAATAAATGGAAGTAGCACTCACAAGCCCAAAAAACGATACCTGTTGGGA
GTTAACAGTGGAAGCGGTTAAACCGCCTGGCACACCACCAAAGTTGTTAA
ATCAAAGGCTTTCACTTTCAC
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protein sequence of jgi.p|Nanoce1779_2|159892

>mRNA_7572-protein ID=mRNA_7572-protein|Name=jgi.p|Nanoce1779_2|159892|organism=Nannochloropsis oceanica|type=polypeptide|length=85bp
MFECLCAASVLPFVLALLIERVRSIHIFKSQPPSTCSGLPAHTLPPFLPP
FPSTSFPCTAHPFLISHFISVSFGVTDQQQNLKT*
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mRNA from alignment at scaffold_20:286310..286780-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7572 ID=mRNA_7572|Name=jgi.p|Nanoce1779_2|159892|organism=Nannochloropsis oceanica|type=mRNA|length=471bp|location=Sequence derived from alignment at scaffold_20:286310..286780- (Nannochloropsis oceanica)
CGGCCTTACAGTGCACACTGGCTTACTTTCTTTCTGAGAGGTAGACTCAA
TAAAATGAGTTTTTCAGTATCCCTGTGTGTGTGGATGGGCGCGTGCATAT
GTTCGAGTGTCTGTGTGCTGCGAGTGTTCTCCCTTTCGTCCTCGCTCTCT
TGATAGAGCGAGTTCGTTCGATCCATATCTTTAAATCACAACCACCGTCA
ACATGCTCCGGTTTACCAGCACACACTCTTCCCCCCTTCCTCCCTCCCTT
TCCATCAACCTCTTTCCCCTGCACCGCGCACCCCTTTCTAATTTCCCATT
TCATCAGTGTGTCCTTTGGTGTGACCGACCAGCAGCAAAATTTGAAAACT
TAATAAATGGAAGTAGCACTCACAAGCCCAAAAAACGATACCTGTTGGGA
GTTAACAGTGGAAGCGGTTAAACCGCCTGGCACACCACCAAAGTTGTTAA
ATCAAAGGCTTTCACTTTCAC
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Coding sequence (CDS) from alignment at scaffold_20:286310..286780-

>mRNA_7572 ID=mRNA_7572|Name=jgi.p|Nanoce1779_2|159892|organism=Nannochloropsis oceanica|type=CDS|length=255bp|location=Sequence derived from alignment at scaffold_20:286310..286780- (Nannochloropsis oceanica)
ATGTTCGAGTGTCTGTGTGCTGCGAGTGTTCTCCCTTTCGTCCTCGCTCT
CTTGATAGAGCGAGTTCGTTCGATCCATATCTTTAAATCACAACCACCGT
CAACATGCTCCGGTTTACCAGCACACACTCTTCCCCCCTTCCTCCCTCCC
TTTCCATCAACCTCTTTCCCCTGCACCGCGCACCCCTTTCTAATTTCCCA
TTTCATCAGTGTGTCCTTTGGTGTGACCGACCAGCAGCAAAATTTGAAAA
CTTAA
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Synonyms
Publications