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Properties
| Property Name | Value |
|---|
| TranscriptId | 632431 |
| Track | FilteredModels2 |
| ProteinId | 632345 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_20 | supercontig | scaffold_20:279465..282284 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_7570 ID=mRNA_7570|Name=jgi.p|Nanoce1779_2|632345|organism=Nannochloropsis oceanica|type=mRNA|length=2671bp
GAGAGATATAGCTGTGGGCAGTGTCATTTCTGCTCCACACGCCCGCTACT
CATCCTCCTCCTCCTCCGCCTCCTCCGCCTCCTCCTCCTGCTCGATACCG
ACTCAAGCGCATACATACCATGGACAAATGCATCCAAGCAGCGGGTTAGG
ATTACCGGAAATGAAACGGGCCAAGAGAGACGAGACGAGCCCCAAGCTGC
CTCCTGCATCTACGTTGCGCTTGCCGCCAGGATCGACTGCCCCGTTCGCG
TTGCAGCAGGAGCGACGATACCCTCAACAGCAACAGCAGCAGCAGCAACA
GCAATATCTCCGCCAGCAGCAGCAGCTCCAGCAGCCAGTCCAAACGCGGC
AGTCTCTCATGGGACCATATCTTCAGTTGTTTCAATTTTATGCGGATCAC
GTGGATAACCACATGCCCACAGGACAAGAGAAGTACATGACAAAGTTCGA
GCAGTGGAGAACCTTTATTCTCAACCAACTTTCGTCCCTGAACAAGCCCT
CCTCTGCCCTAGCCCCCCTCACCCCCAAGCAAGAAGAGGCCATCACCAAG
GCAATCCACTTCGTTCAAAAATGGAACGAACAATACTACAAAGCAGTCAA
CAAGGTACAAACTGCTGCTGCTTCTGCGGCGGCGGCTGCTGCTACTGCTG
CTGACCAGGGAGCGGCACGACCCCTCTCTCTGCAGGGAGAGACATCATCC
AAGGCTGATTTCGAGAGAGAGTTAGAGCTGATGCAAAGAGGACTATCGCA
TCAGCCTTACCTTGCTTTTCATCGTCATGAGGGACCTGCAGCTGCTGCTT
CTGCTGCTCCTGGAGTAGGGGACATGCAACAGCGCCAGTATGAGCACCAG
CTTGGAGGATATATGCAAGCACGTTCTCCCTGGGAGATGTTACAAGCCAA
GGTGGAGACATTGTTGAGGGAAGGAAGGGACTCGAAGCGCCTGGCCGTGC
TCAAGTCAGTGCCAGCCCTCCTGGCCGATGCACTGGACGATCGTGGGCTA
CCGCGGGAGGGGTTTCCCTATCCCGCTTCTTCGTCCTTATACTCATCGCG
GACGGAGAGCACGGCCGATCTGTTGAAGAGGTTGCGTTTGACTTTCAATG
CGGCTCTGGCAGGGTTGGCGCAGAGCAAGGTGGAGGAGCAGCACCAAGGC
GGTGAAAAGGGCGATAGCAGTAGCAGCAGTGGTGCACCGATCGGAAATGG
CTTTGTCGAAGCGTGTGGGCTTCTCAGGCAGGTGGACGTACTCCTTCAGG
ACCTCCGAGACCGCCAAGAGGCGGAGGAATCCGGGGAGTCCCCTAGACAA
AGGTATCATCAGCAGCAGCAGCGACGCCAAGCAGCAGTTGTAGGGCGAGG
GACACAAACGCGTACTTCAGAGGCATGGAAAGATGAAGAGGGGAGGAAAG
GGGGGGGGAAGGGCGATCCGCAGACCATCCAACTATACCTCAACGCTCTA
GAAGAGGTATCTTCGGCCTCGGGTCACCCCTCCTTGTCCTCCTTCTCTTC
CTCCCCAACTCCTCCCTCCCGACTTCTTTTTTTCGCCTGTGTGGACCCGA
ACGCAAGGTGGCTGGAAGCGCTCGCTTCCCCAGCAGCAGGCATCCGGAAT
GTAGACGCCCTTCGCTCTGCTCTCGAGGATTGTGCACATTTGAAAGGCAT
TGTTCTCGCGGGGACCAAAGGGCCGAACGGCAAGTTAATCGCCAAATGCG
GGGGGGTGAAAGGAGAGATGTGGAAAGCGGAAGTGCACTTGAAGACAAGA
CTGACCTTGGCGGAACGAGCGAGGGCACCTGCAGCGGCCGCAGCGATGGG
CGCGACATTGTTTCCGCTGTTGGTACGTGTGACGTTAGTTGGAAATAAGA
ATAGTGCATGGAGTGAACGCGTGGATGAGGAGATACAGGCGGCGCTGCTG
CAATGGAGGGAATGGACGAAAGATGATGTGGTAAAGACCGTCGCTGCTGT
GCTGGAAGAAATACGCATACGTGTCCGACCTGGCGCGAGATGCGACCTGA
CGGGCCGCGCACTGAAGCTGGATGGTGCTTCACTCGAGCCGGTGCCGCCC
TATACGCCATGCACCAGTAGCAGCTGTGGGAGTGGGGTGGCGTATCAGTT
GCAGCTGTAATAAGGTGAAACGGGCTGGAGAGGGAGCAGTGGCGACAGCG
GCTAGAACAAAATGTGTCATATTTAAAACAGGCGGGGGGGAGGAGAGAAA
AAGAGAACACTTACGTCGGTTTATGGGGGAGTATGGTAATATGGATGTAC
TTGAAAGGTCCCAGGCTACTCATCTGAATCGAATGATAGATAGACATGGG
GCAGCCAGCTAAGTAGATATGCAGGCTTGCACCTGGTGACGTAATCGTAG
AAAGAAAGAGCAGTGGAAGAATCTGTAGCAACGGCGATGTGATTGTGAGG
ATGAATCTGAATCGAAAGCAACAAATAGTGTTAGCATGAGCAGCAGCAAC
GACAATAGATACGGTGTGGTTGTGAGAACTAATCTGACTTGCAAGCAACA
AACAAGAATCCCAAAGAATTGCGAGAGAGTTTTGGTCTGATGTTTTGCTT
TCCTCAGATATGACATGGATGGGCCATGGGCGGTGAAGTAAACGGCGAAC
ACCGTACGCTCCTGAAAGTCCTACAAAACACACGTGAAGCAGGAAAATTA
CAATAAGAGCAACAACATGGT back to topprotein sequence of jgi.p|Nanoce1779_2|632345 >mRNA_7570-protein ID=mRNA_7570-protein|Name=jgi.p|Nanoce1779_2|632345|organism=Nannochloropsis oceanica|type=polypeptide|length=661bp
MHPSSGLGLPEMKRAKRDETSPKLPPASTLRLPPGSTAPFALQQERRYPQ
QQQQQQQQQYLRQQQQLQQPVQTRQSLMGPYLQLFQFYADHVDNHMPTGQ
EKYMTKFEQWRTFILNQLSSLNKPSSALAPLTPKQEEAITKAIHFVQKWN
EQYYKAVNKVQTAAASAAAAAATAADQGAARPLSLQGETSSKADFERELE
LMQRGLSHQPYLAFHRHEGPAAAASAAPGVGDMQQRQYEHQLGGYMQARS
PWEMLQAKVETLLREGRDSKRLAVLKSVPALLADALDDRGLPREGFPYPA
SSSLYSSRTESTADLLKRLRLTFNAALAGLAQSKVEEQHQGGEKGDSSSS
SGAPIGNGFVEACGLLRQVDVLLQDLRDRQEAEESGESPRQRYHQQQQRR
QAAVVGRGTQTRTSEAWKDEEGRKGGGKGDPQTIQLYLNALEEVSSASGH
PSLSSFSSSPTPPSRLLFFACVDPNARWLEALASPAAGIRNVDALRSALE
DCAHLKGIVLAGTKGPNGKLIAKCGGVKGEMWKAEVHLKTRLTLAERARA
PAAAAAMGATLFPLLVRVTLVGNKNSAWSERVDEEIQAALLQWREWTKDD
VVKTVAAVLEEIRIRVRPGARCDLTGRALKLDGASLEPVPPYTPCTSSSC
GSGVAYQLQL* back to topmRNA from alignment at scaffold_20:279465..282284- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_7570 ID=mRNA_7570|Name=jgi.p|Nanoce1779_2|632345|organism=Nannochloropsis oceanica|type=mRNA|length=2820bp|location=Sequence derived from alignment at scaffold_20:279465..282284- (Nannochloropsis oceanica)
GAGAGATATAGCTGTGGGCAGTGTCATTTCTGCTCCACACGCCCGCTACT
CATCCTCCTCCTCCTCCGCCTCCTCCGCCTCCTCCTCCTGCTCGATACCG
ACTCAAGCGCATACATACCATGGACAAATGCATCCAAGCAGCGGGTTAGG
ATTACCGGAAATGAAACGGGCCAAGAGAGACGAGACGAGCCCCAAGCTGC
CTCCTGCATCTACGTTGCGCTTGCCGCCAGGATCGACTGCCCCGTTCGCG
TTGCAGCAGGAGCGACGATACCCTCAACAGCAACAGCAGCAGCAGCAACA
GCAATATCTCCGCCAGCAGCAGCAGCTCCAGCAGCCAGTCCAAACGCGGC
AGTCTCTCATGGGACCATATCTTCAGTTGTTTCAATTTTATGCGGATCAC
GTGGATAACCACATGCCCACAGGACAAGAGAAGTACATGACAAAGTTCGA
GCAGGTGCGTGCCTTCCTCTCCCTCCGTCCGCCATCCTCCCCCTCTCCCT
CCCCCGTACAGACGAATTTCATCACGAAGCACTTCGGCCGTTTCAACAAG
CCGCCATCTCACCCGACCCTTCCATCCATCCCTTCCTCCCTCGATCCCCG
CAGTGGAGAACCTTTATTCTCAACCAACTTTCGTCCCTGAACAAGCCCTC
CTCTGCCCTAGCCCCCCTCACCCCCAAGCAAGAAGAGGCCATCACCAAGG
CAATCCACTTCGTTCAAAAATGGAACGAACAATACTACAAAGCAGTCAAC
AAGGTACAAACTGCTGCTGCTTCTGCGGCGGCGGCTGCTGCTACTGCTGC
TGACCAGGGAGCGGCACGACCCCTCTCTCTGCAGGGAGAGACATCATCCA
AGGCTGATTTCGAGAGAGAGTTAGAGCTGATGCAAAGAGGACTATCGCAT
CAGCCTTACCTTGCTTTTCATCGTCATGAGGGACCTGCAGCTGCTGCTTC
TGCTGCTCCTGGAGTAGGGGACATGCAACAGCGCCAGTATGAGCACCAGC
TTGGAGGATATATGCAAGCACGTTCTCCCTGGGAGATGTTACAAGCCAAG
GTGGAGACATTGTTGAGGGAAGGAAGGGACTCGAAGCGCCTGGCCGTGCT
CAAGTCAGTGCCAGCCCTCCTGGCCGATGCACTGGACGATCGTGGGCTAC
CGCGGGAGGGGTTTCCCTATCCCGCTTCTTCGTCCTTATACTCATCGCGG
ACGGAGAGCACGGCCGATCTGTTGAAGAGGTTGCGTTTGACTTTCAATGC
GGCTCTGGCAGGGTTGGCGCAGAGCAAGGTGGAGGAGCAGCACCAAGGCG
GTGAAAAGGGCGATAGCAGTAGCAGCAGTGGTGCACCGATCGGAAATGGC
TTTGTCGAAGCGTGTGGGCTTCTCAGGCAGGTGGACGTACTCCTTCAGGA
CCTCCGAGACCGCCAAGAGGCGGAGGAATCCGGGGAGTCCCCTAGACAAA
GGTATCATCAGCAGCAGCAGCGACGCCAAGCAGCAGTTGTAGGGCGAGGG
ACACAAACGCGTACTTCAGAGGCATGGAAAGATGAAGAGGGGAGGAAAGG
GGGGGGGAAGGGCGATCCGCAGACCATCCAACTATACCTCAACGCTCTAG
AAGAGGTATCTTCGGCCTCGGGTCACCCCTCCTTGTCCTCCTTCTCTTCC
TCCCCAACTCCTCCCTCCCGACTTCTTTTTTTCGCCTGTGTGGACCCGAA
CGCAAGGTGGCTGGAAGCGCTCGCTTCCCCAGCAGCAGGCATCCGGAATG
TAGACGCCCTTCGCTCTGCTCTCGAGGATTGTGCACATTTGAAAGGCATT
GTTCTCGCGGGGACCAAAGGGCCGAACGGCAAGTTAATCGCCAAATGCGG
GGGGGTGAAAGGAGAGATGTGGAAAGCGGAAGTGCACTTGAAGACAAGAC
TGACCTTGGCGGAACGAGCGAGGGCACCTGCAGCGGCCGCAGCGATGGGC
GCGACATTGTTTCCGCTGTTGGTACGTGTGACGTTAGTTGGAAATAAGAA
TAGTGCATGGAGTGAACGCGTGGATGAGGAGATACAGGCGGCGCTGCTGC
AATGGAGGGAATGGACGAAAGATGATGTGGTAAAGACCGTCGCTGCTGTG
CTGGAAGAAATACGCATACGTGTCCGACCTGGCGCGAGATGCGACCTGAC
GGGCCGCGCACTGAAGCTGGATGGTGCTTCACTCGAGCCGGTGCCGCCCT
ATACGCCATGCACCAGTAGCAGCTGTGGGAGTGGGGTGGCGTATCAGTTG
CAGCTGTAATAAGGTGAAACGGGCTGGAGAGGGAGCAGTGGCGACAGCGG
CTAGAACAAAATGTGTCATATTTAAAACAGGCGGGGGGGAGGAGAGAAAA
AGAGAACACTTACGTCGGTTTATGGGGGAGTATGGTAATATGGATGTACT
TGAAAGGTCCCAGGCTACTCATCTGAATCGAATGATAGATAGACATGGGG
CAGCCAGCTAAGTAGATATGCAGGCTTGCACCTGGTGACGTAATCGTAGA
AAGAAAGAGCAGTGGAAGAATCTGTAGCAACGGCGATGTGATTGTGAGGA
TGAATCTGAATCGAAAGCAACAAATAGTGTTAGCATGAGCAGCAGCAACG
ACAATAGATACGGTGTGGTTGTGAGAACTAATCTGACTTGCAAGCAACAA
ACAAGAATCCCAAAGAATTGCGAGAGAGTTTTGGTCTGATGTTTTGCTTT
CCTCAGATATGACATGGATGGGCCATGGGCGGTGAAGTAAACGGCGAACA
CCGTACGCTCCTGAAAGTCCTACAAAACACACGTGAAGCAGGAAAATTAC
AATAAGAGCAACAACATGGT back to topCoding sequence (CDS) from alignment at scaffold_20:279465..282284- >mRNA_7570 ID=mRNA_7570|Name=jgi.p|Nanoce1779_2|632345|organism=Nannochloropsis oceanica|type=CDS|length=3966bp|location=Sequence derived from alignment at scaffold_20:279465..282284- (Nannochloropsis oceanica)
TGGAGAACCTTTATTCTCAACCAACTTTCGTCCCTGAACAAGCCCTCCTC
TGCCCTAGCCCCCCTCACCCCCAAGCAAGAAGAGGCCATCACCAAGGCAA
TCCACTTCGTTCAAAAATGGAACGAACAATACTACAAAGCAGTCAACAAG
GTACAAACTGCTGCTGCTTCTGCGGCGGCGGCTGCTGCTACTGCTGCTGA
CCAGGGAGCGGCACGACCCCTCTCTCTGCAGGGAGAGACATCATCCAAGG
CTGATTTCGAGAGAGAGTTAGAGCTGATGCAAAGAGGACTATCGCATCAG
CCTTACCTTGCTTTTCATCGTCATGAGGGACCTGCAGCTGCTGCTTCTGC
TGCTCCTGGAGTAGGGGACATGCAACAGCGCCAGTATGAGCACCAGCTTG
GAGGATATATGCAAGCACGTTCTCCCTGGGAGATGTTACAAGCCAAGGTG
GAGACATTGTTGAGGGAAGGAAGGGACTCGAAGCGCCTGGCCGTGCTCAA
GTCAGTGCCAGCCCTCCTGGCCGATGCACTGGACGATCGTGGGCTACCGC
GGGAGGGGTTTCCCTATCCCGCTTCTTCGTCCTTATACTCATCGCGGACG
GAGAGCACGGCCGATCTGTTGAAGAGGTTGCGTTTGACTTTCAATGCGGC
TCTGGCAGGGTTGGCGCAGAGCAAGGTGGAGGAGCAGCACCAAGGCGGTG
AAAAGGGCGATAGCAGTAGCAGCAGTGGTGCACCGATCGGAAATGGCTTT
GTCGAAGCGTGTGGGCTTCTCAGGCAGGTGGACGTACTCCTTCAGGACCT
CCGAGACCGCCAAGAGGCGGAGGAATCCGGGGAGTCCCCTAGACAAAGGT
ATCATCAGCAGCAGCAGCGACGCCAAGCAGCAGTTGTAGGGCGAGGGACA
CAAACGCGTACTTCAGAGGCATGGAAAGATGAAGAGGGGAGGAAAGGGGG
GGGGAAGGGCGATCCGCAGACCATCCAACTATACCTCAACGCTCTAGAAG
AGGTATCTTCGGCCTCGGGTCACCCCTCCTTGTCCTCCTTCTCTTCCTCC
CCAACTCCTCCCTCCCGACTTCTTTTTTTCGCCTGTGTGGACCCGAACGC
AAGGTGGCTGGAAGCGCTCGCTTCCCCAGCAGCAGGCATCCGGAATGTAG
ACGCCCTTCGCTCTGCTCTCGAGGATTGTGCACATTTGAAAGGCATTGTT
CTCGCGGGGACCAAAGGGCCGAACGGCAAGTTAATCGCCAAATGCGGGGG
GGTGAAAGGAGAGATGTGGAAAGCGGAAGTGCACTTGAAGACAAGACTGA
CCTTGGCGGAACGAGCGAGGGCACCTGCAGCGGCCGCAGCGATGGGCGCG
ACATTGTTTCCGCTGTTGGTACGTGTGACGTTAGTTGGAAATAAGAATAG
TGCATGGAGTGAACGCGTGGATGAGGAGATACAGGCGGCGCTGCTGCAAT
GGAGGGAATGGACGAAAGATGATGTGGTAAAGACCGTCGCTGCTGTGCTG
GAAGAAATACGCATACGTGTCCGACCTGGCGCGAGATGCGACCTGACGGG
CCGCGCACTGAAGCTGGATGGTGCTTCACTCGAGCCGGTGCCGCCCTATA
CGCCATGCACCAGTAGCAGCTGTGGGAGTGGGGTGGCGTATCAGTTGCAG
CTGTAAATGCATCCAAGCAGCGGGTTAGGATTACCGGAAATGAAACGGGC
CAAGAGAGACGAGACGAGCCCCAAGCTGCCTCCTGCATCTACGTTGCGCT
TGCCGCCAGGATCGACTGCCCCGTTCGCGTTGCAGCAGGAGCGACGATAC
CCTCAACAGCAACAGCAGCAGCAGCAACAGCAATATCTCCGCCAGCAGCA
GCAGCTCCAGCAGCCAGTCCAAACGCGGCAGTCTCTCATGGGACCATATC
TTCAGTTGTTTCAATTTTATGCGGATCACGTGGATAACCACATGCCCACA
GGACAAGAGAAGTACATGACAAAGTTCGAGCAGTGGAGAACCTTTATTCT
CAACCAACTTTCGTCCCTGAACAAGCCCTCCTCTGCCCTAGCCCCCCTCA
CCCCCAAGCAAGAAGAGGCCATCACCAAGGCAATCCACTTCGTTCAAAAA
TGGAACGAACAATACTACAAAGCAGTCAACAAGGTACAAACTGCTGCTGC
TTCTGCGGCGGCGGCTGCTGCTACTGCTGCTGACCAGGGAGCGGCACGAC
CCCTCTCTCTGCAGGGAGAGACATCATCCAAGGCTGATTTCGAGAGAGAG
TTAGAGCTGATGCAAAGAGGACTATCGCATCAGCCTTACCTTGCTTTTCA
TCGTCATGAGGGACCTGCAGCTGCTGCTTCTGCTGCTCCTGGAGTAGGGG
ACATGCAACAGCGCCAGTATGAGCACCAGCTTGGAGGATATATGCAAGCA
CGTTCTCCCTGGGAGATGTTACAAGCCAAGGTGGAGACATTGTTGAGGGA
AGGAAGGGACTCGAAGCGCCTGGCCGTGCTCAAGTCAGTGCCAGCCCTCC
TGGCCGATGCACTGGACGATCGTGGGCTACCGCGGGAGGGGTTTCCCTAT
CCCGCTTCTTCGTCCTTATACTCATCGCGGACGGAGAGCACGGCCGATCT
GTTGAAGAGGTTGCGTTTGACTTTCAATGCGGCTCTGGCAGGGTTGGCGC
AGAGCAAGGTGGAGGAGCAGCACCAAGGCGGTGAAAAGGGCGATAGCAGT
AGCAGCAGTGGTGCACCGATCGGAAATGGCTTTGTCGAAGCGTGTGGGCT
TCTCAGGCAGGTGGACGTACTCCTTCAGGACCTCCGAGACCGCCAAGAGG
CGGAGGAATCCGGGGAGTCCCCTAGACAAAGGTATCATCAGCAGCAGCAG
CGACGCCAAGCAGCAGTTGTAGGGCGAGGGACACAAACGCGTACTTCAGA
GGCATGGAAAGATGAAGAGGGGAGGAAAGGGGGGGGGAAGGGCGATCCGC
AGACCATCCAACTATACCTCAACGCTCTAGAAGAGGTATCTTCGGCCTCG
GGTCACCCCTCCTTGTCCTCCTTCTCTTCCTCCCCAACTCCTCCCTCCCG
ACTTCTTTTTTTCGCCTGTGTGGACCCGAACGCAAGGTGGCTGGAAGCGC
TCGCTTCCCCAGCAGCAGGCATCCGGAATGTAGACGCCCTTCGCTCTGCT
CTCGAGGATTGTGCACATTTGAAAGGCATTGTTCTCGCGGGGACCAAAGG
GCCGAACGGCAAGTTAATCGCCAAATGCGGGGGGGTGAAAGGAGAGATGT
GGAAAGCGGAAGTGCACTTGAAGACAAGACTGACCTTGGCGGAACGAGCG
AGGGCACCTGCAGCGGCCGCAGCGATGGGCGCGACATTGTTTCCGCTGTT
GGTACGTGTGACGTTAGTTGGAAATAAGAATAGTGCATGGAGTGAACGCG
TGGATGAGGAGATACAGGCGGCGCTGCTGCAATGGAGGGAATGGACGAAA
GATGATGTGGTAAAGACCGTCGCTGCTGTGCTGGAAGAAATACGCATACG
TGTCCGACCTGGCGCGAGATGCGACCTGACGGGCCGCGCACTGAAGCTGG
ATGGTGCTTCACTCGAGCCGGTGCCGCCCTATACGCCATGCACCAGTAGC
AGCTGTGGGAGTGGGGTGGCGTATCAGTTGCAGCTGTAAATGCATCCAAG
CAGCGGGTTAGGATTACCGGAAATGAAACGGGCCAAGAGAGACGAGACGA
GCCCCAAGCTGCCTCCTGCATCTACGTTGCGCTTGCCGCCAGGATCGACT
GCCCCGTTCGCGTTGCAGCAGGAGCGACGATACCCTCAACAGCAACAGCA
GCAGCAGCAACAGCAATATCTCCGCCAGCAGCAGCAGCTCCAGCAGCCAG
TCCAAACGCGGCAGTCTCTCATGGGACCATATCTTCAGTTGTTTCAATTT
TATGCGGATCACGTGGATAACCACATGCCCACAGGACAAGAGAAGTACAT
GACAAAGTTCGAGCAG back to top
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