jgi.p|Nanoce1779_2|159820, mRNA_7569 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|159820
Unique NamemRNA_7569
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length672
Alignment locationscaffold_20:279304..279975 +

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Properties
Property NameValue
TranscriptId159906
TrackFilteredModels2
ProteinId159820
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:279304..279975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|159820gene_7569Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|159820mRNA_7569-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7569CDS_7569Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7569 ID=mRNA_7569|Name=jgi.p|Nanoce1779_2|159820|organism=Nannochloropsis oceanica|type=mRNA|length=672bp
CACTTGTCTGTGTAGGTAGCACAGGGAGAGGGAGGGAAGAGCAGGCTGGA
ATACCAAACCTTCCATCCTTCTTGTAGGCAAGACTTTGCTTGGTATACCG
GGGCACAAGGGTGGAGATGCAAGAAACACAAGCTGAACAAGAAATAGCAT
GTGCGGAGAGAACCATGTTGTTGCTCTTATTGTAATTTTCCTGCTTCACG
TGTGTTTTGTAGGACTTTCAGGAGCGTACGGTGTTCGCCGTTTACTTCAC
CGCCCATGGCCCATCCATGTCATATCTGAGGAAAGCAAAACATCAGACCA
AAACTCTCTCGCAATTCTTTGGGATTCTTGTTTGTTGCTTGCAAGTCAGA
TTAGTTCTCACAACCACACCGTATCTATTGTCGTTGCTGCTGCTCATGCT
AACACTATTTGTTGCTTTCGATTCAGATTCATCCTCACAATCACATCGCC
GTTGCTACAGATTCTTCCACTGCTCTTTCTTTCTACGATTACGTCACCAG
GTGCAAGCCTGCATATCTACTTAGCTGGCTGCCCCATGTCTATCTATCAT
TCGATTCAGATGAGTAGCCTGGGACCTTTCAAGTACATCCATATTACCAT
ACTCCCCCATAAACCGACGTAAGTGTTCTCTTTTTCTCTCCTCCCCCCCG
CCTGTTTTAAATATGACACATT
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protein sequence of jgi.p|Nanoce1779_2|159820

>mRNA_7569-protein ID=mRNA_7569-protein|Name=jgi.p|Nanoce1779_2|159820|organism=Nannochloropsis oceanica|type=polypeptide|length=158bp
MCGENHVVALIVIFLLHVCFVGLSGAYGVRRLLHRPWPIHVISEESKTSD
QNSLAILWDSCLLLASQISSHNHTVSIVVAAAHANTICCFRFRFILTITS
PLLQILPLLFLSTITSPGASLHIYLAGCPMSIYHSIQMSSLGPFKYIHIT
ILPHKPT*
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mRNA from alignment at scaffold_20:279304..279975+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7569 ID=mRNA_7569|Name=jgi.p|Nanoce1779_2|159820|organism=Nannochloropsis oceanica|type=mRNA|length=672bp|location=Sequence derived from alignment at scaffold_20:279304..279975+ (Nannochloropsis oceanica)
CACTTGTCTGTGTAGGTAGCACAGGGAGAGGGAGGGAAGAGCAGGCTGGA ATACCAAACCTTCCATCCTTCTTGTAGGCAAGACTTTGCTTGGTATACCG GGGCACAAGGGTGGAGATGCAAGAAACACAAGCTGAACAAGAAATAGCAT GTGCGGAGAGAACCATGTTGTTGCTCTTATTGTAATTTTCCTGCTTCACG TGTGTTTTGTAGGACTTTCAGGAGCGTACGGTGTTCGCCGTTTACTTCAC CGCCCATGGCCCATCCATGTCATATCTGAGGAAAGCAAAACATCAGACCA AAACTCTCTCGCAATTCTTTGGGATTCTTGTTTGTTGCTTGCAAGTCAGA TTAGTTCTCACAACCACACCGTATCTATTGTCGTTGCTGCTGCTCATGCT AACACTATTTGTTGCTTTCGATTCAGATTCATCCTCACAATCACATCGCC GTTGCTACAGATTCTTCCACTGCTCTTTCTTTCTACGATTACGTCACCAG GTGCAAGCCTGCATATCTACTTAGCTGGCTGCCCCATGTCTATCTATCAT TCGATTCAGATGAGTAGCCTGGGACCTTTCAAGTACATCCATATTACCAT ACTCCCCCATAAACCGACGTAAGTGTTCTCTTTTTCTCTCCTCCCCCCCG CCTGTTTTAAATATGACACATT
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Coding sequence (CDS) from alignment at scaffold_20:279304..279975+

>mRNA_7569 ID=mRNA_7569|Name=jgi.p|Nanoce1779_2|159820|organism=Nannochloropsis oceanica|type=CDS|length=474bp|location=Sequence derived from alignment at scaffold_20:279304..279975+ (Nannochloropsis oceanica)
ATGTGCGGAGAGAACCATGTTGTTGCTCTTATTGTAATTTTCCTGCTTCA
CGTGTGTTTTGTAGGACTTTCAGGAGCGTACGGTGTTCGCCGTTTACTTC
ACCGCCCATGGCCCATCCATGTCATATCTGAGGAAAGCAAAACATCAGAC
CAAAACTCTCTCGCAATTCTTTGGGATTCTTGTTTGTTGCTTGCAAGTCA
GATTAGTTCTCACAACCACACCGTATCTATTGTCGTTGCTGCTGCTCATG
CTAACACTATTTGTTGCTTTCGATTCAGATTCATCCTCACAATCACATCG
CCGTTGCTACAGATTCTTCCACTGCTCTTTCTTTCTACGATTACGTCACC
AGGTGCAAGCCTGCATATCTACTTAGCTGGCTGCCCCATGTCTATCTATC
ATTCGATTCAGATGAGTAGCCTGGGACCTTTCAAGTACATCCATATTACC
ATACTCCCCCATAAACCGACGTAA
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Synonyms
Publications