jgi.p|Nanoce1779_2|672839, mRNA_7568 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|672839
Unique NamemRNA_7568
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1315
Alignment locationscaffold_20:277319..278817 -

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Properties
Property NameValue
TranscriptId672925
TrackFilteredModels2
ProteinId672839
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:277319..278817 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672839gene_7568Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672839mRNA_7568-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7568CDS_7568Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7568 ID=mRNA_7568|Name=jgi.p|Nanoce1779_2|672839|organism=Nannochloropsis oceanica|type=mRNA|length=1315bp
ATGGGGTTCCTCTCTTCTTCGTGCAAGGACATGGACATGCCAACTAAGCA
AAGGGTAGCATTGCACCTGGCCAGTTGCCATCTGGAGGAAGGGGGGCGAC
CTTCAGTACGTTGCGCCGATAAGGAAAAGGACGTGCGCGTGTGCCTGAAA
CGAGTGCAAGGCGATGCGGCATGGGCAACCTACACGGACCTTTTTCTATT
CGCCGACAGCTACTGTCACAGCCTGCAGGCTGATGCGTGGCAGGCGCAGA
CGGAGGCCTTGATTAATCACCTGGGACAGAGCAGCCGCCAAGCCGTCTCC
CTCCTTCATGACTCGGCAGATACACAACGGGAATTATTGGAGCATCAGCA
GGCTTCTACACGCTTGCAGGAGGACTTGGTCAAGGCCCAAGAACGATTGC
AGGATAACCTCGAGGCGTCCTCGCGGCAATTCGGTCGCTTGACAGATGAG
GTGGAGACGGGGTTCGGGGCGATTGGGAAGCAGTATGAGAGCCTGCTATC
ATTACAAGAGTCGAATTTACAGCGCCAAGCTGAGTTGTTGGCGGGCCTGG
ACAGGGCGAATGAGGAGGTACGGGAATTTACGACACGGATGGAGGAGGAA
TTTGCCAGGGAATCCCAGCGGTTCAACCTCGTCAAGAACGTCTTGGGTCA
AGCTTCCCTCGTTCTCGAGGTAGCCACGCATGGCTGGCGCCTTGCATCCA
TCGGCGTGTGCATTGCTGCGCTTTGGACGCTGGCCCCCAGCAGCACCCTT
GTCCATGCCCGCAAAGCCTCCGCGTGGATCATCCTGCTTGCGACCCTCCT
CGGTCTCCTTCGCTCCATTATCATCCCCGCCCACCGTCTCCTCCCCACAG
CCTGCATCCTCTCTCAAGCACTAGCTTTGTTGGACTTGTATGTGGAAGAG
TTGGGAGGTGGGTTTTGGATGATGTACTATGTGGCTTTTTTTGTCATCTT
GCTCTCGCTCTGGCGTCAGGGCGAGGAACTGGTGGTGGTTGTGGTGGTGG
AGAAGGTGGGGAAGGAGGGGAGTCATGCTGCCGAATGGATGGTGGCGGAG
CAGCCGTATCGCTAGGAGAAGCAGCTTTTTCTGCGCCAGAACCAGTAGTA
ACACATATAGCAGCACCAACAGCAGAAACAAAAGCGGTCGCCTCTCAGCA
TGACACTGTTACGTCTCGATCTTGCTCAGGTACCAGCACACCTCTCTACA
GCAGTGCCTGCGAGTACGGTAGTAGCACTTCAATACCTCGTCGACGCTCT
GCGCGTTTGTACTCCCAATCACCGTCTCCTTATGGTGGTCTTAGACAGAT
TTCTCGCGGCGGCGG
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protein sequence of jgi.p|Nanoce1779_2|672839

>mRNA_7568-protein ID=mRNA_7568-protein|Name=jgi.p|Nanoce1779_2|672839|organism=Nannochloropsis oceanica|type=polypeptide|length=355bp
MGFLSSSCKDMDMPTKQRVALHLASCHLEEGGRPSVRCADKEKDVRVCLK
RVQGDAAWATYTDLFLFADSYCHSLQADAWQAQTEALINHLGQSSRQAVS
LLHDSADTQRELLEHQQASTRLQEDLVKAQERLQDNLEASSRQFGRLTDE
VETGFGAIGKQYESLLSLQESNLQRQAELLAGLDRANEEVREFTTRMEEE
FARESQRFNLVKNVLGQASLVLEVATHGWRLASIGVCIAALWTLAPSSTL
VHARKASAWIILLATLLGLLRSIIIPAHRLLPTACILSQALALLDLYVEE
LGGGFWMMYYVAFFVILLSLWRQGEELVVVVVVEKVGKEGSHAAEWMVAE
QPYR*
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mRNA from alignment at scaffold_20:277319..278817-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7568 ID=mRNA_7568|Name=jgi.p|Nanoce1779_2|672839|organism=Nannochloropsis oceanica|type=mRNA|length=1499bp|location=Sequence derived from alignment at scaffold_20:277319..278817- (Nannochloropsis oceanica)
ATGGGGTTCCTCTCTTCTTCGTGCAAGGACATGGACATGCCAACTAAGCA
AAGGGTAGCATTGCACCTGGCCAGTTGCCATCTGGAGGAAGGGGGGCGAC
CTTCAGTACGTTGCGCCGATAAGGAAAAGGACGTGCGCGTGTGCCTGAAA
CGAGTGCAAGGCGATGCGGCATGGGCAACCTACACGGACCTTTTTCTATT
CGCCGACAGCTACTGTCACAGCCTGCAGGCTGATGCGTGGCAGGCGCAGA
CGGAGGCCTTGATTAATCACCTGGGACAGAGCAGCCGCCAAGCCGTCTCC
CTCCTTCATGACTCGGCAGATACACAACGGGAATTATTGGAGCATCAGCA
GGCTTCTACACGCTTGCAGGAGGACTTGGTCAAGGCCCAAGAACGATTGC
AGGATAACCTCGAGGCGTCCTCGCGGCAATTCGGTCGCTTGACAGATGAG
GTGGAGACGGGGTTCGGGGCGATTGGGAAGCAGTATGAGAGCCTGCTATC
ATTACAAGAGTCGAATTTACAGCGCCAAGCTGAGTTGTTGGCGGGCCTGG
ACAGGGCGAATGAGGAGGTACGGGAATTTACGACACGGATGGAGGAGGAA
TTTGCCAGGGAATCCCAGCGGTTCAACCTCGTCAAGAACGTCTTGGGTCA
AGCTTCCCTCGTTCTCGAGGTAGCCACGCATGGCTGGCGCCTTGCATCCA
TCGGCGTGTGCATTGCTGCGCTTTGGACGCTGGCCCCCAGCAGCACCCTT
GTCCATGCCCGCAAAGCCTCCGCGTGGATCATCCTGCTTGCGACCCTCCT
CGGTCTCCTTCGCTCCATTATCATCCCCGCCCACCGTCTCCTCCCCACAG
CCTGCATCCTCTCTCAAGCACTAGCTTTGTTGGACTTGTATGTGGAAGAG
TTGGGAGGTGGGTTTTGGATGATGTACTATGTGGCTTTTTTTGTCATCTT
GCTCTCGCTCTGGCGTCAGGTGCCTTCTCCGTTGAGTTCTTTGTGGAAGG
CGATGCGGGAGTGGTTGGGTAGGAGAGAAGGAGAGGAAGTGGGAAAGGAA
GAGTGGGAGGATGATGGACGATGGAGTCAAAGGAAGGAAGAGGCTCTACG
GGCCGTTGCTGAGAAAATTATAAACGCCGGCGGTGGTGTTGGTTGTGGTG
TAGGGCGAGGAACTGGTGGTGGTTGTGGTGGTGGAGAAGGTGGGGAAGGA
GGGGAGTCATGCTGCCGAATGGATGGTGGCGGAGCAGCCGTATCGCTAGG
AGAAGCAGCTTTTTCTGCGCCAGAACCAGTAGTAACACATATAGCAGCAC
CAACAGCAGAAACAAAAGCGGTCGCCTCTCAGCATGACACTGTTACGTCT
CGATCTTGCTCAGGTACCAGCACACCTCTCTACAGCAGTGCCTGCGAGTA
CGGTAGTAGCACTTCAATACCTCGTCGACGCTCTGCGCGTTTGTACTCCC
AATCACCGTCTCCTTATGGTGGTCTTAGACAGATTTCTCGCGGCGGCGG
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Coding sequence (CDS) from alignment at scaffold_20:277319..278817-

>mRNA_7568 ID=mRNA_7568|Name=jgi.p|Nanoce1779_2|672839|organism=Nannochloropsis oceanica|type=CDS|length=2130bp|location=Sequence derived from alignment at scaffold_20:277319..278817- (Nannochloropsis oceanica)
GGCGAGGAACTGGTGGTGGTTGTGGTGGTGGAGAAGGTGGGGAAGGAGGG
GAGTCATGCTGCCGAATGGATGGTGGCGGAGCAGCCGTATCGCTAGATGG
GGTTCCTCTCTTCTTCGTGCAAGGACATGGACATGCCAACTAAGCAAAGG
GTAGCATTGCACCTGGCCAGTTGCCATCTGGAGGAAGGGGGGCGACCTTC
AGTACGTTGCGCCGATAAGGAAAAGGACGTGCGCGTGTGCCTGAAACGAG
TGCAAGGCGATGCGGCATGGGCAACCTACACGGACCTTTTTCTATTCGCC
GACAGCTACTGTCACAGCCTGCAGGCTGATGCGTGGCAGGCGCAGACGGA
GGCCTTGATTAATCACCTGGGACAGAGCAGCCGCCAAGCCGTCTCCCTCC
TTCATGACTCGGCAGATACACAACGGGAATTATTGGAGCATCAGCAGGCT
TCTACACGCTTGCAGGAGGACTTGGTCAAGGCCCAAGAACGATTGCAGGA
TAACCTCGAGGCGTCCTCGCGGCAATTCGGTCGCTTGACAGATGAGGTGG
AGACGGGGTTCGGGGCGATTGGGAAGCAGTATGAGAGCCTGCTATCATTA
CAAGAGTCGAATTTACAGCGCCAAGCTGAGTTGTTGGCGGGCCTGGACAG
GGCGAATGAGGAGGTACGGGAATTTACGACACGGATGGAGGAGGAATTTG
CCAGGGAATCCCAGCGGTTCAACCTCGTCAAGAACGTCTTGGGTCAAGCT
TCCCTCGTTCTCGAGGTAGCCACGCATGGCTGGCGCCTTGCATCCATCGG
CGTGTGCATTGCTGCGCTTTGGACGCTGGCCCCCAGCAGCACCCTTGTCC
ATGCCCGCAAAGCCTCCGCGTGGATCATCCTGCTTGCGACCCTCCTCGGT
CTCCTTCGCTCCATTATCATCCCCGCCCACCGTCTCCTCCCCACAGCCTG
CATCCTCTCTCAAGCACTAGCTTTGTTGGACTTGTATGTGGAAGAGTTGG
GAGGTGGGTTTTGGATGATGTACTATGTGGCTTTTTTTGTCATCTTGCTC
TCGCTCTGGCGTCAGGGCGAGGAACTGGTGGTGGTTGTGGTGGTGGAGAA
GGTGGGGAAGGAGGGGAGTCATGCTGCCGAATGGATGGTGGCGGAGCAGC
CGTATCGCTAGATGGGGTTCCTCTCTTCTTCGTGCAAGGACATGGACATG
CCAACTAAGCAAAGGGTAGCATTGCACCTGGCCAGTTGCCATCTGGAGGA
AGGGGGGCGACCTTCAGTACGTTGCGCCGATAAGGAAAAGGACGTGCGCG
TGTGCCTGAAACGAGTGCAAGGCGATGCGGCATGGGCAACCTACACGGAC
CTTTTTCTATTCGCCGACAGCTACTGTCACAGCCTGCAGGCTGATGCGTG
GCAGGCGCAGACGGAGGCCTTGATTAATCACCTGGGACAGAGCAGCCGCC
AAGCCGTCTCCCTCCTTCATGACTCGGCAGATACACAACGGGAATTATTG
GAGCATCAGCAGGCTTCTACACGCTTGCAGGAGGACTTGGTCAAGGCCCA
AGAACGATTGCAGGATAACCTCGAGGCGTCCTCGCGGCAATTCGGTCGCT
TGACAGATGAGGTGGAGACGGGGTTCGGGGCGATTGGGAAGCAGTATGAG
AGCCTGCTATCATTACAAGAGTCGAATTTACAGCGCCAAGCTGAGTTGTT
GGCGGGCCTGGACAGGGCGAATGAGGAGGTACGGGAATTTACGACACGGA
TGGAGGAGGAATTTGCCAGGGAATCCCAGCGGTTCAACCTCGTCAAGAAC
GTCTTGGGTCAAGCTTCCCTCGTTCTCGAGGTAGCCACGCATGGCTGGCG
CCTTGCATCCATCGGCGTGTGCATTGCTGCGCTTTGGACGCTGGCCCCCA
GCAGCACCCTTGTCCATGCCCGCAAAGCCTCCGCGTGGATCATCCTGCTT
GCGACCCTCCTCGGTCTCCTTCGCTCCATTATCATCCCCGCCCACCGTCT
CCTCCCCACAGCCTGCATCCTCTCTCAAGCACTAGCTTTGTTGGACTTGT
ATGTGGAAGAGTTGGGAGGTGGGTTTTGGATGATGTACTATGTGGCTTTT
TTTGTCATCTTGCTCTCGCTCTGGCGTCAG
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Synonyms
Publications