jgi.p|Nanoce1779_2|641239, mRNA_7567 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|641239
Unique NamemRNA_7567
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1227
Alignment locationscaffold_20:274824..276395 -

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Properties
Property NameValue
TranscriptId641325
TrackFilteredModels2
ProteinId641239
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:274824..276395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|641239gene_7567Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|641239mRNA_7567-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7567CDS_7567Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7567 ID=mRNA_7567|Name=jgi.p|Nanoce1779_2|641239|organism=Nannochloropsis oceanica|type=mRNA|length=1227bp
ATGGGCGCTACCACCGAGACCCAGACTAAAAAGACGTTTGTAATGCGGAC
AGTCGCAGTACGAAACGAGGATATAGCGCTGGAAGCAGCGACAGGAGACG
GGGCAGCAGGGGATGCAACTGCTGGTGGCCTTTCACGCTCGATACTAACA
GAGGCTCCGGCGGCGTCCACTTCACTTTCATCGCGACTGGCACCGTCCTC
AGCACAAGCTTCAGCTTCGCCTATAATGGTTCGGCCCGAAGCACGCCCCC
CAGGTCTACTAGGCCGTCTACAAACGTTAGGTGCGGTGGTATTTTTGGGG
CTCATGGGATCCTCGCTGTACCTAGTGATAGCGTCTGCGCTTTACATCGT
GATTGGTTTCGGCGTATTGGGCCACCGTATTTGCCCTTCGATCTTACTGG
GGGTTTGGGTAGGACAAGGTCTAATTTCTGTCAAGGTGCTGCACCAAGAC
CCGGAAGGTATCAAGCGGTCGTGGCTCTTCCGAGAAATGGCTAACTTTTT
TGATGTGACATTGGTGATGGAGCAGAAATTGGACACTTCCAAGAAGTACT
TGTTCGCACAGCATCCGCACGGTATCCTTCCTCTCGCCCCCGTGTTGTCC
GCTTACTTTATCTCGGACGTGGTGCCCGGCGGAGGCAAGATTTTCTGTTT
GATACATAGCGGAATGTTCTACTTGCCCATCGTCCGATTTTTCATGGGCG
AATGGGGTGCGCTCCCCGCAAACAAGGAGTCTGTCGCCGAAGCCAAGCAA
CAAGGACAGCATTGCTCCATCGTCGTCGGCGGGGTCGCAGAGATTTTCCT
TCAAAACGGAGAGACCGAACAACTGCAACTCAGGAAGGGTTTTATTCGTG
AGGCGATTCGCAACGGATATGACCTTGTGCCCATGTTCCATTTTGGAGCC
ACGCGCATGTATAATTTTATCGGCCCCGCCTCATTTTGGCGGTCCTTGTC
AAACCGCCTGCCGTTTCCCTTCTTTCTGATTGGGGGATGGGGGAAAGGAA
TGACCCTGCTTCCCAAACCCGTGCGTATCGTTATTGCTGTTGGCTCACCA
ATAGGTCTGGCGGCTCTGTATGGCGTGCCGGAAGGACAGTCGGTGCCTGA
TCCAGACCCGGCGAAGGTGGATTTGATTTATGAGGAGTGGAAGAAGCATT
TGGCAGGCCTTTATTATCGGCAGCGACCTGAGTGGGAGACGCGAGAGTTG
GAGATTTGGGACTGTCCGAAGTCGTGA
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protein sequence of jgi.p|Nanoce1779_2|641239

>mRNA_7567-protein ID=mRNA_7567-protein|Name=jgi.p|Nanoce1779_2|641239|organism=Nannochloropsis oceanica|type=polypeptide|length=409bp
MGATTETQTKKTFVMRTVAVRNEDIALEAATGDGAAGDATAGGLSRSILT
EAPAASTSLSSRLAPSSAQASASPIMVRPEARPPGLLGRLQTLGAVVFLG
LMGSSLYLVIASALYIVIGFGVLGHRICPSILLGVWVGQGLISVKVLHQD
PEGIKRSWLFREMANFFDVTLVMEQKLDTSKKYLFAQHPHGILPLAPVLS
AYFISDVVPGGGKIFCLIHSGMFYLPIVRFFMGEWGALPANKESVAEAKQ
QGQHCSIVVGGVAEIFLQNGETEQLQLRKGFIREAIRNGYDLVPMFHFGA
TRMYNFIGPASFWRSLSNRLPFPFFLIGGWGKGMTLLPKPVRIVIAVGSP
IGLAALYGVPEGQSVPDPDPAKVDLIYEEWKKHLAGLYYRQRPEWETREL
EIWDCPKS*
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mRNA from alignment at scaffold_20:274824..276395-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7567 ID=mRNA_7567|Name=jgi.p|Nanoce1779_2|641239|organism=Nannochloropsis oceanica|type=mRNA|length=1572bp|location=Sequence derived from alignment at scaffold_20:274824..276395- (Nannochloropsis oceanica)
ATGGGCGCTACCACCGAGACCCAGACTAAAAAGACGTTTGTAATGCGGAC
AGTCGCAGGTACGTTGTGGGGCGAGAAAAAAGGTGCCTCCGCTTGGAGGA
ATACGACTACCCCTTGTTGGGAGGGGAGAGGGTTGTATAGAACCAAAAAA
CTGTGGCCTCTATTACATTTATTTTTCTTACCCAGTACGAAACGAGGATA
TAGCGCTGGAAGCAGCGACAGGAGACGGGGCAGCAGGGGATGCAACTGCT
GGTGGCCTTTCACGCTCGATACTAACAGAGGCTCCGGCGGCGTCCACTTC
ACTTTCATCGCGACTGGCACCGTCCTCAGCACAAGCTTCAGCTTCGCCTA
TAATGGTTCGGCCCGAAGCACGCCCCCCAGGTCTACTAGGCCGTCTACAA
ACGTTAGGTGCGGTGGTATTTTTGGGGCTCATGGGATCCTCGCTGTACCT
AGTGATAGCGTCTGCGCTTTACATCGTGATTGGTTTCGGCGTATTGGGCC
ACCGTATTTGCCCTTCGATCTTACTGGGGGTTTGGGTAGGACAAGGTCTA
ATTTCTGTCAAGGTGCTGCACCAAGACCCGGAAGGTATCAAGCGGTCGTG
GCTCTTCCGAGAAATGGCTAACTTTTTTGATGTGACATTGGTGATGGAGC
AGAAATTGGACACTTCCAAGAAGTACTTGTTCGCACAGCATCCGCACGGT
ATCCTTCCTCTCGCCCCCGTGTTGTCCGCTTACTTTATCTCGGACGTGGT
GCCCGGCGGAGGCAAGATTTTCTGTTTGATACATAGGTAAGGAAATGCGT
GCGCATACTGCCCGCATCCTAAGGGGGGAAAGAGGAAGCAGGGAAAGAAA
CGCGGGTGGTTGAAACCATGACTATCATCATGTAGATTTGTCGAGGGAAA
TGTTTTTAATAAATTACGGTGCAGCATGTACCACCCACTATCTTGCAGAC
ATTCTCATCTCGTCTCTACCGATCTCTCCCCACCTCGCCAACACACACTT
TTAGCGGAATGTTCTACTTGCCCATCGTCCGATTTTTCATGGGCGAATGG
GGTGCGCTCCCCGCAAACAAGGAGTCTGTCGCCGAAGCCAAGCAACAAGG
ACAGCATTGCTCCATCGTCGTCGGCGGGGTCGCAGAGATTTTCCTTCAAA
ACGGAGAGACCGAACAACTGCAACTCAGGAAGGGTTTTATTCGTGAGGCG
ATTCGCAACGGATATGACCTTGTGCCCATGTTCCATTTTGGAGCCACGCG
CATGTATAATTTTATCGGCCCCGCCTCATTTTGGCGGTCCTTGTCAAACC
GCCTGCCGTTTCCCTTCTTTCTGATTGGGGGATGGGGGAAAGGAATGACC
CTGCTTCCCAAACCCGTGCGTATCGTTATTGCTGTTGGCTCACCAATAGG
TCTGGCGGCTCTGTATGGCGTGCCGGAAGGACAGTCGGTGCCTGATCCAG
ACCCGGCGAAGGTGGATTTGATTTATGAGGAGTGGAAGAAGCATTTGGCA
GGCCTTTATTATCGGCAGCGACCTGAGTGGGAGACGCGAGAGTTGGAGAT
TTGGGACTGTCCGAAGTCGTGA
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Coding sequence (CDS) from alignment at scaffold_20:274824..276395-

>mRNA_7567 ID=mRNA_7567|Name=jgi.p|Nanoce1779_2|641239|organism=Nannochloropsis oceanica|type=CDS|length=3681bp|location=Sequence derived from alignment at scaffold_20:274824..276395- (Nannochloropsis oceanica)
CGGAATGTTCTACTTGCCCATCGTCCGATTTTTCATGGGCGAATGGGGTG
CGCTCCCCGCAAACAAGGAGTCTGTCGCCGAAGCCAAGCAACAAGGACAG
CATTGCTCCATCGTCGTCGGCGGGGTCGCAGAGATTTTCCTTCAAAACGG
AGAGACCGAACAACTGCAACTCAGGAAGGGTTTTATTCGTGAGGCGATTC
GCAACGGATATGACCTTGTGCCCATGTTCCATTTTGGAGCCACGCGCATG
TATAATTTTATCGGCCCCGCCTCATTTTGGCGGTCCTTGTCAAACCGCCT
GCCGTTTCCCTTCTTTCTGATTGGGGGATGGGGGAAAGGAATGACCCTGC
TTCCCAAACCCGTGCGTATCGTTATTGCTGTTGGCTCACCAATAGGTCTG
GCGGCTCTGTATGGCGTGCCGGAAGGACAGTCGGTGCCTGATCCAGACCC
GGCGAAGGTGGATTTGATTTATGAGGAGTGGAAGAAGCATTTGGCAGGCC
TTTATTATCGGCAGCGACCTGAGTGGGAGACGCGAGAGTTGGAGATTTGG
GACTGTCCGAAGTCGTGATACGAAACGAGGATATAGCGCTGGAAGCAGCG
ACAGGAGACGGGGCAGCAGGGGATGCAACTGCTGGTGGCCTTTCACGCTC
GATACTAACAGAGGCTCCGGCGGCGTCCACTTCACTTTCATCGCGACTGG
CACCGTCCTCAGCACAAGCTTCAGCTTCGCCTATAATGGTTCGGCCCGAA
GCACGCCCCCCAGGTCTACTAGGCCGTCTACAAACGTTAGGTGCGGTGGT
ATTTTTGGGGCTCATGGGATCCTCGCTGTACCTAGTGATAGCGTCTGCGC
TTTACATCGTGATTGGTTTCGGCGTATTGGGCCACCGTATTTGCCCTTCG
ATCTTACTGGGGGTTTGGGTAGGACAAGGTCTAATTTCTGTCAAGGTGCT
GCACCAAGACCCGGAAGGTATCAAGCGGTCGTGGCTCTTCCGAGAAATGG
CTAACTTTTTTGATGTGACATTGGTGATGGAGCAGAAATTGGACACTTCC
AAGAAGTACTTGTTCGCACAGCATCCGCACGGTATCCTTCCTCTCGCCCC
CGTGTTGTCCGCTTACTTTATCTCGGACGTGGTGCCCGGCGGAGGCAAGA
TTTTCTGTTTGATACATAGATGGGCGCTACCACCGAGACCCAGACTAAAA
AGACGTTTGTAATGCGGACAGTCGCAGCGGAATGTTCTACTTGCCCATCG
TCCGATTTTTCATGGGCGAATGGGGTGCGCTCCCCGCAAACAAGGAGTCT
GTCGCCGAAGCCAAGCAACAAGGACAGCATTGCTCCATCGTCGTCGGCGG
GGTCGCAGAGATTTTCCTTCAAAACGGAGAGACCGAACAACTGCAACTCA
GGAAGGGTTTTATTCGTGAGGCGATTCGCAACGGATATGACCTTGTGCCC
ATGTTCCATTTTGGAGCCACGCGCATGTATAATTTTATCGGCCCCGCCTC
ATTTTGGCGGTCCTTGTCAAACCGCCTGCCGTTTCCCTTCTTTCTGATTG
GGGGATGGGGGAAAGGAATGACCCTGCTTCCCAAACCCGTGCGTATCGTT
ATTGCTGTTGGCTCACCAATAGGTCTGGCGGCTCTGTATGGCGTGCCGGA
AGGACAGTCGGTGCCTGATCCAGACCCGGCGAAGGTGGATTTGATTTATG
AGGAGTGGAAGAAGCATTTGGCAGGCCTTTATTATCGGCAGCGACCTGAG
TGGGAGACGCGAGAGTTGGAGATTTGGGACTGTCCGAAGTCGTGATACGA
AACGAGGATATAGCGCTGGAAGCAGCGACAGGAGACGGGGCAGCAGGGGA
TGCAACTGCTGGTGGCCTTTCACGCTCGATACTAACAGAGGCTCCGGCGG
CGTCCACTTCACTTTCATCGCGACTGGCACCGTCCTCAGCACAAGCTTCA
GCTTCGCCTATAATGGTTCGGCCCGAAGCACGCCCCCCAGGTCTACTAGG
CCGTCTACAAACGTTAGGTGCGGTGGTATTTTTGGGGCTCATGGGATCCT
CGCTGTACCTAGTGATAGCGTCTGCGCTTTACATCGTGATTGGTTTCGGC
GTATTGGGCCACCGTATTTGCCCTTCGATCTTACTGGGGGTTTGGGTAGG
ACAAGGTCTAATTTCTGTCAAGGTGCTGCACCAAGACCCGGAAGGTATCA
AGCGGTCGTGGCTCTTCCGAGAAATGGCTAACTTTTTTGATGTGACATTG
GTGATGGAGCAGAAATTGGACACTTCCAAGAAGTACTTGTTCGCACAGCA
TCCGCACGGTATCCTTCCTCTCGCCCCCGTGTTGTCCGCTTACTTTATCT
CGGACGTGGTGCCCGGCGGAGGCAAGATTTTCTGTTTGATACATAGATGG
GCGCTACCACCGAGACCCAGACTAAAAAGACGTTTGTAATGCGGACAGTC
GCAGCGGAATGTTCTACTTGCCCATCGTCCGATTTTTCATGGGCGAATGG
GGTGCGCTCCCCGCAAACAAGGAGTCTGTCGCCGAAGCCAAGCAACAAGG
ACAGCATTGCTCCATCGTCGTCGGCGGGGTCGCAGAGATTTTCCTTCAAA
ACGGAGAGACCGAACAACTGCAACTCAGGAAGGGTTTTATTCGTGAGGCG
ATTCGCAACGGATATGACCTTGTGCCCATGTTCCATTTTGGAGCCACGCG
CATGTATAATTTTATCGGCCCCGCCTCATTTTGGCGGTCCTTGTCAAACC
GCCTGCCGTTTCCCTTCTTTCTGATTGGGGGATGGGGGAAAGGAATGACC
CTGCTTCCCAAACCCGTGCGTATCGTTATTGCTGTTGGCTCACCAATAGG
TCTGGCGGCTCTGTATGGCGTGCCGGAAGGACAGTCGGTGCCTGATCCAG
ACCCGGCGAAGGTGGATTTGATTTATGAGGAGTGGAAGAAGCATTTGGCA
GGCCTTTATTATCGGCAGCGACCTGAGTGGGAGACGCGAGAGTTGGAGAT
TTGGGACTGTCCGAAGTCGTGATACGAAACGAGGATATAGCGCTGGAAGC
AGCGACAGGAGACGGGGCAGCAGGGGATGCAACTGCTGGTGGCCTTTCAC
GCTCGATACTAACAGAGGCTCCGGCGGCGTCCACTTCACTTTCATCGCGA
CTGGCACCGTCCTCAGCACAAGCTTCAGCTTCGCCTATAATGGTTCGGCC
CGAAGCACGCCCCCCAGGTCTACTAGGCCGTCTACAAACGTTAGGTGCGG
TGGTATTTTTGGGGCTCATGGGATCCTCGCTGTACCTAGTGATAGCGTCT
GCGCTTTACATCGTGATTGGTTTCGGCGTATTGGGCCACCGTATTTGCCC
TTCGATCTTACTGGGGGTTTGGGTAGGACAAGGTCTAATTTCTGTCAAGG
TGCTGCACCAAGACCCGGAAGGTATCAAGCGGTCGTGGCTCTTCCGAGAA
ATGGCTAACTTTTTTGATGTGACATTGGTGATGGAGCAGAAATTGGACAC
TTCCAAGAAGTACTTGTTCGCACAGCATCCGCACGGTATCCTTCCTCTCG
CCCCCGTGTTGTCCGCTTACTTTATCTCGGACGTGGTGCCCGGCGGAGGC
AAGATTTTCTGTTTGATACATAGATGGGCGCTACCACCGAGACCCAGACT
AAAAAGACGTTTGTAATGCGGACAGTCGCAG
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Synonyms
Publications