jgi.p|Nanoce1779_2|599189, mRNA_7563 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599189
Unique NamemRNA_7563
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1103
Alignment locationscaffold_20:259385..260487 -

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Properties
Property NameValue
TranscriptId599275
TrackFilteredModels2
ProteinId599189
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:259385..260487 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599189gene_7563Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599189mRNA_7563-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7563CDS_7563Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7563 ID=mRNA_7563|Name=jgi.p|Nanoce1779_2|599189|organism=Nannochloropsis oceanica|type=mRNA|length=1103bp
AGGGAGGGAGGGAAAAGAAGCCCGTGTTGGCGGACACGTTTATAGGAACG
TTGGGGTACATGAGTCCCGAGAGGATCATGGGCCAGGGGTACTCTTTCGA
GGCGGACATCTGGGGCTTTGGGCTGTCGATCCTTGCGGTGGCTGTTGGTG
CCTTCCCACTCAAGCAGTCTACGCCTTGTTACTGGGGTCTGGTGCATGCT
GTGTGTGACTCGCCAGCGCCTGAGGTACCTGCCTATTTCTCCTCTCAATT
CCGGGACTTTGTCGAGCAGTGCCTGGTGAAGGACCCGGAACAACGAGCGT
CGAGCCAAGCTCTGCTCTCCCACCCTTTCATTGCATCTCGTCACCACTTG
CACAAGGACGCCCGAGGGCGAGTCATGGAATTTCCCGAAGACCGTCAGAT
GAAGGTCGCGGAGCTCGAGACGATTTGTACTGTCCTTGCTGAGCACCTTA
CCCAGAGGGAGAGGGGAAGAGCCGCAGCTGCTGCGGCGATGGTTGAAGAA
GCGGCTACAGCGGAGACGAAGGAGGAAGGAGATCGAGCGGCACGCCTGAA
GGAGGCGGTGTGGTGGGCACGAAACGACAAGAAAAAGGAGGGGAGGGTTG
AAGAGATGAGCATGGGGCAGGTCTGTCGCCAGGATGAAGGGGAGGATGAT
AAGCAGGAGTCAGATAACGAGGACGCGGACGAGGGGCGAAAGGAGGAGAG
AGAGGGAGAAAAAGGAATGGAGGAGGAGGAGGAGGAGGAGGGTTGGCTGG
CTCATAACTCGGGCAATGAAGAGCATCCCTCCTCTCGAGCTCAAAAAGGC
GATGGAGAAATGGGGTCTTTGCCGATGGACCGGGCGACGATGGTGCAAAG
ACTGGCCGAAGAGCTGGCTTTGGAGGAGGGAATGGTGAAGGAGAAGTTGG
AGGCTGCGTTTGTGGCTGCCGAGAAGAAGACAGACGAAGGGTTAATCGCC
CGTGTACAGACTCCTCCCCCGGGCATGGCTAAGAGCGCGTCGGCGTTGTC
CCTTGCTTCGTTGCCGTTGAAGGAAGGGGAGGAGGAGGAAGAGGAGGAGG
AGGATGTGAGGGTGTGGTGAGGTGGGAAGAGCCGAGGGAGGTAGGAATTG
AAG
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protein sequence of jgi.p|Nanoce1779_2|599189

>mRNA_7563-protein ID=mRNA_7563-protein|Name=jgi.p|Nanoce1779_2|599189|organism=Nannochloropsis oceanica|type=polypeptide|length=337bp
MSPERIMGQGYSFEADIWGFGLSILAVAVGAFPLKQSTPCYWGLVHAVCD
SPAPEVPAYFSSQFRDFVEQCLVKDPEQRASSQALLSHPFIASRHHLHKD
ARGRVMEFPEDRQMKVAELETICTVLAEHLTQRERGRAAAAAAMVEEAAT
AETKEEGDRAARLKEAVWWARNDKKKEGRVEEMSMGQVCRQDEGEDDKQE
SDNEDADEGRKEEREGEKGMEEEEEEEGWLAHNSGNEEHPSSRAQKGDGE
MGSLPMDRATMVQRLAEELALEEGMVKEKLEAAFVAAEKKTDEGLIARVQ
TPPPGMAKSASALSLASLPLKEGEEEEEEEEDVRVW*
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mRNA from alignment at scaffold_20:259385..260487-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7563 ID=mRNA_7563|Name=jgi.p|Nanoce1779_2|599189|organism=Nannochloropsis oceanica|type=mRNA|length=1103bp|location=Sequence derived from alignment at scaffold_20:259385..260487- (Nannochloropsis oceanica)
AGGGAGGGAGGGAAAAGAAGCCCGTGTTGGCGGACACGTTTATAGGAACG
TTGGGGTACATGAGTCCCGAGAGGATCATGGGCCAGGGGTACTCTTTCGA
GGCGGACATCTGGGGCTTTGGGCTGTCGATCCTTGCGGTGGCTGTTGGTG
CCTTCCCACTCAAGCAGTCTACGCCTTGTTACTGGGGTCTGGTGCATGCT
GTGTGTGACTCGCCAGCGCCTGAGGTACCTGCCTATTTCTCCTCTCAATT
CCGGGACTTTGTCGAGCAGTGCCTGGTGAAGGACCCGGAACAACGAGCGT
CGAGCCAAGCTCTGCTCTCCCACCCTTTCATTGCATCTCGTCACCACTTG
CACAAGGACGCCCGAGGGCGAGTCATGGAATTTCCCGAAGACCGTCAGAT
GAAGGTCGCGGAGCTCGAGACGATTTGTACTGTCCTTGCTGAGCACCTTA
CCCAGAGGGAGAGGGGAAGAGCCGCAGCTGCTGCGGCGATGGTTGAAGAA
GCGGCTACAGCGGAGACGAAGGAGGAAGGAGATCGAGCGGCACGCCTGAA
GGAGGCGGTGTGGTGGGCACGAAACGACAAGAAAAAGGAGGGGAGGGTTG
AAGAGATGAGCATGGGGCAGGTCTGTCGCCAGGATGAAGGGGAGGATGAT
AAGCAGGAGTCAGATAACGAGGACGCGGACGAGGGGCGAAAGGAGGAGAG
AGAGGGAGAAAAAGGAATGGAGGAGGAGGAGGAGGAGGAGGGTTGGCTGG
CTCATAACTCGGGCAATGAAGAGCATCCCTCCTCTCGAGCTCAAAAAGGC
GATGGAGAAATGGGGTCTTTGCCGATGGACCGGGCGACGATGGTGCAAAG
ACTGGCCGAAGAGCTGGCTTTGGAGGAGGGAATGGTGAAGGAGAAGTTGG
AGGCTGCGTTTGTGGCTGCCGAGAAGAAGACAGACGAAGGGTTAATCGCC
CGTGTACAGACTCCTCCCCCGGGCATGGCTAAGAGCGCGTCGGCGTTGTC
CCTTGCTTCGTTGCCGTTGAAGGAAGGGGAGGAGGAGGAAGAGGAGGAGG
AGGATGTGAGGGTGTGGTGAGGTGGGAAGAGCCGAGGGAGGTAGGAATTG
AAG
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Coding sequence (CDS) from alignment at scaffold_20:259385..260487-

>mRNA_7563 ID=mRNA_7563|Name=jgi.p|Nanoce1779_2|599189|organism=Nannochloropsis oceanica|type=CDS|length=1011bp|location=Sequence derived from alignment at scaffold_20:259385..260487- (Nannochloropsis oceanica)
ATGAGTCCCGAGAGGATCATGGGCCAGGGGTACTCTTTCGAGGCGGACAT
CTGGGGCTTTGGGCTGTCGATCCTTGCGGTGGCTGTTGGTGCCTTCCCAC
TCAAGCAGTCTACGCCTTGTTACTGGGGTCTGGTGCATGCTGTGTGTGAC
TCGCCAGCGCCTGAGGTACCTGCCTATTTCTCCTCTCAATTCCGGGACTT
TGTCGAGCAGTGCCTGGTGAAGGACCCGGAACAACGAGCGTCGAGCCAAG
CTCTGCTCTCCCACCCTTTCATTGCATCTCGTCACCACTTGCACAAGGAC
GCCCGAGGGCGAGTCATGGAATTTCCCGAAGACCGTCAGATGAAGGTCGC
GGAGCTCGAGACGATTTGTACTGTCCTTGCTGAGCACCTTACCCAGAGGG
AGAGGGGAAGAGCCGCAGCTGCTGCGGCGATGGTTGAAGAAGCGGCTACA
GCGGAGACGAAGGAGGAAGGAGATCGAGCGGCACGCCTGAAGGAGGCGGT
GTGGTGGGCACGAAACGACAAGAAAAAGGAGGGGAGGGTTGAAGAGATGA
GCATGGGGCAGGTCTGTCGCCAGGATGAAGGGGAGGATGATAAGCAGGAG
TCAGATAACGAGGACGCGGACGAGGGGCGAAAGGAGGAGAGAGAGGGAGA
AAAAGGAATGGAGGAGGAGGAGGAGGAGGAGGGTTGGCTGGCTCATAACT
CGGGCAATGAAGAGCATCCCTCCTCTCGAGCTCAAAAAGGCGATGGAGAA
ATGGGGTCTTTGCCGATGGACCGGGCGACGATGGTGCAAAGACTGGCCGA
AGAGCTGGCTTTGGAGGAGGGAATGGTGAAGGAGAAGTTGGAGGCTGCGT
TTGTGGCTGCCGAGAAGAAGACAGACGAAGGGTTAATCGCCCGTGTACAG
ACTCCTCCCCCGGGCATGGCTAAGAGCGCGTCGGCGTTGTCCCTTGCTTC
GTTGCCGTTGAAGGAAGGGGAGGAGGAGGAAGAGGAGGAGGAGGATGTGA
GGGTGTGGTGA
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Synonyms
Publications