jgi.p|Nanoce1779_2|599187, mRNA_7562 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599187
Unique NamemRNA_7562
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1139
Alignment locationscaffold_20:257744..258882 -

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Properties
Property NameValue
TranscriptId599273
TrackFilteredModels2
ProteinId599187
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:257744..258882 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599187gene_7562Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599187mRNA_7562-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7562CDS_7562Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7562 ID=mRNA_7562|Name=jgi.p|Nanoce1779_2|599187|organism=Nannochloropsis oceanica|type=mRNA|length=1139bp
TCTGTCGAGAATTAGCGAATAATATTATATCTGCGTTGTTCACATTGCCT
AAGATATCTCGAAACATTGAGTCTCGTTTGAACGCAGTCTGGAGGAATAG
CCAGCAAAGCCACTATGCTGGAGCGGGCTCTCATTTAAGACGCTTTCCTT
CCATACATTGCAGACCTACGGCTTTGTTGCCCTATCTTAAGGTTTTCATG
CAAGCAATCAATGCAATGCATGAATGCATGCATGCATTTGGCATGCGATG
ATGCGATGCGTTCATGCGTTCTCCAACCAAGCATGAAGAAGCACCAAAGA
GCTTTATGCGTTTGCGTTCCTGCACATTTCAGGGGCTTCTGTGGACAAAG
GACTTGGATGCGCACTTTCGAGCTTTTTGTGCTACAGCTGTAGTGATAAC
ACCTTTGGGACAAACATTACCGGACCTTGAGCAATTTGAACGCGAGATGG
CGCATTATGAGGGACTACAGCTCCAAGTCAACACTAAGCTCTCCTCTCCC
GTGGACGTGTTGGGATGGCTGCGCGTCAATACCTTACCAATCAAGCAGGC
AATTTTGGGCTGGTGCACGCGTTGGATAGCCACTTACAGCTCTCACATTA
AGGCCACACTGGTAGCTCGGCTGCGGGATATGGACGCGTTAATGCAAGAA
GTCCGGACGGGACTGTCCATTCCAGTAGTGGCGAATGGGAGTAAGGAAGC
GCTAATGGCTGTCATGAAGTCAATCTGCGACGTGCGTAAGGCTAGCGAAA
TATTTGCAGAGCTCTGGGTTCCTTTCTATGATATAATTGCTGCGCTGAAG
CGGCACAATGTGGACGTGACGGACGTAACCATTGATGGTGACTCGGGCTA
TGACTTGCAATCGTACCTCGAAGAAGCTCCTACGGCTTGGGAGCTGCTGG
TGAGAAAGACATTTGTTAAAAAGGAGGAGATTCTGCCTTTACAGATGACT
GAGGTGGAAATTTTGCGACAGAATCTAGACGCCTTCGGGGCTTCAGTTAA
TTCACTCCATCGAGAAAAATATATAGGCCACATTCGAACCTTCAGGTTAT
CGAAATAGGGTATCTTTCGGTAGAGTTGATATACGTGTATAGCCATTTCT
AGAGGGAAGGCAGTATGTTTGCAACCTCCCCACCAAATC
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protein sequence of jgi.p|Nanoce1779_2|599187

>mRNA_7562-protein ID=mRNA_7562-protein|Name=jgi.p|Nanoce1779_2|599187|organism=Nannochloropsis oceanica|type=polypeptide|length=265bp
MRSPTKHEEAPKSFMRLRSCTFQGLLWTKDLDAHFRAFCATAVVITPLGQ
TLPDLEQFEREMAHYEGLQLQVNTKLSSPVDVLGWLRVNTLPIKQAILGW
CTRWIATYSSHIKATLVARLRDMDALMQEVRTGLSIPVVANGSKEALMAV
MKSICDVRKASEIFAELWVPFYDIIAALKRHNVDVTDVTIDGDSGYDLQS
YLEEAPTAWELLVRKTFVKKEEILPLQMTEVEILRQNLDAFGASVNSLHR
EKYIGHIRTFRLSK*
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mRNA from alignment at scaffold_20:257744..258882-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7562 ID=mRNA_7562|Name=jgi.p|Nanoce1779_2|599187|organism=Nannochloropsis oceanica|type=mRNA|length=1139bp|location=Sequence derived from alignment at scaffold_20:257744..258882- (Nannochloropsis oceanica)
TCTGTCGAGAATTAGCGAATAATATTATATCTGCGTTGTTCACATTGCCT
AAGATATCTCGAAACATTGAGTCTCGTTTGAACGCAGTCTGGAGGAATAG
CCAGCAAAGCCACTATGCTGGAGCGGGCTCTCATTTAAGACGCTTTCCTT
CCATACATTGCAGACCTACGGCTTTGTTGCCCTATCTTAAGGTTTTCATG
CAAGCAATCAATGCAATGCATGAATGCATGCATGCATTTGGCATGCGATG
ATGCGATGCGTTCATGCGTTCTCCAACCAAGCATGAAGAAGCACCAAAGA
GCTTTATGCGTTTGCGTTCCTGCACATTTCAGGGGCTTCTGTGGACAAAG
GACTTGGATGCGCACTTTCGAGCTTTTTGTGCTACAGCTGTAGTGATAAC
ACCTTTGGGACAAACATTACCGGACCTTGAGCAATTTGAACGCGAGATGG
CGCATTATGAGGGACTACAGCTCCAAGTCAACACTAAGCTCTCCTCTCCC
GTGGACGTGTTGGGATGGCTGCGCGTCAATACCTTACCAATCAAGCAGGC
AATTTTGGGCTGGTGCACGCGTTGGATAGCCACTTACAGCTCTCACATTA
AGGCCACACTGGTAGCTCGGCTGCGGGATATGGACGCGTTAATGCAAGAA
GTCCGGACGGGACTGTCCATTCCAGTAGTGGCGAATGGGAGTAAGGAAGC
GCTAATGGCTGTCATGAAGTCAATCTGCGACGTGCGTAAGGCTAGCGAAA
TATTTGCAGAGCTCTGGGTTCCTTTCTATGATATAATTGCTGCGCTGAAG
CGGCACAATGTGGACGTGACGGACGTAACCATTGATGGTGACTCGGGCTA
TGACTTGCAATCGTACCTCGAAGAAGCTCCTACGGCTTGGGAGCTGCTGG
TGAGAAAGACATTTGTTAAAAAGGAGGAGATTCTGCCTTTACAGATGACT
GAGGTGGAAATTTTGCGACAGAATCTAGACGCCTTCGGGGCTTCAGTTAA
TTCACTCCATCGAGAAAAATATATAGGCCACATTCGAACCTTCAGGTTAT
CGAAATAGGGTATCTTTCGGTAGAGTTGATATACGTGTATAGCCATTTCT
AGAGGGAAGGCAGTATGTTTGCAACCTCCCCACCAAATC
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Coding sequence (CDS) from alignment at scaffold_20:257744..258882-

>mRNA_7562 ID=mRNA_7562|Name=jgi.p|Nanoce1779_2|599187|organism=Nannochloropsis oceanica|type=CDS|length=795bp|location=Sequence derived from alignment at scaffold_20:257744..258882- (Nannochloropsis oceanica)
ATGCGTTCTCCAACCAAGCATGAAGAAGCACCAAAGAGCTTTATGCGTTT
GCGTTCCTGCACATTTCAGGGGCTTCTGTGGACAAAGGACTTGGATGCGC
ACTTTCGAGCTTTTTGTGCTACAGCTGTAGTGATAACACCTTTGGGACAA
ACATTACCGGACCTTGAGCAATTTGAACGCGAGATGGCGCATTATGAGGG
ACTACAGCTCCAAGTCAACACTAAGCTCTCCTCTCCCGTGGACGTGTTGG
GATGGCTGCGCGTCAATACCTTACCAATCAAGCAGGCAATTTTGGGCTGG
TGCACGCGTTGGATAGCCACTTACAGCTCTCACATTAAGGCCACACTGGT
AGCTCGGCTGCGGGATATGGACGCGTTAATGCAAGAAGTCCGGACGGGAC
TGTCCATTCCAGTAGTGGCGAATGGGAGTAAGGAAGCGCTAATGGCTGTC
ATGAAGTCAATCTGCGACGTGCGTAAGGCTAGCGAAATATTTGCAGAGCT
CTGGGTTCCTTTCTATGATATAATTGCTGCGCTGAAGCGGCACAATGTGG
ACGTGACGGACGTAACCATTGATGGTGACTCGGGCTATGACTTGCAATCG
TACCTCGAAGAAGCTCCTACGGCTTGGGAGCTGCTGGTGAGAAAGACATT
TGTTAAAAAGGAGGAGATTCTGCCTTTACAGATGACTGAGGTGGAAATTT
TGCGACAGAATCTAGACGCCTTCGGGGCTTCAGTTAATTCACTCCATCGA
GAAAAATATATAGGCCACATTCGAACCTTCAGGTTATCGAAATAG
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Synonyms
Publications