jgi.p|Nanoce1779_2|653819, mRNA_7560 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|653819
Unique Name	mRNA_7560
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1491
Alignment location	scaffold_20:253454..254944 +

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Properties


Property Name	Value
TranscriptId	653905
Track	FilteredModels2
ProteinId	653819

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_20	supercontig	scaffold_20:253454..254944 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|653819	gene_7560	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|653819	mRNA_7560-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7560	CDS_7560	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_20:253454..254944+
coding sequence from alignment at scaffold_20:253454..254944+

mRNA sequence

>mRNA_7560 ID=mRNA_7560|Name=jgi.p|Nanoce1779_2|653819|organism=Nannochloropsis oceanica|type=mRNA|length=1491bp
CAGATATCTATCATATATTCTTTGAGCTGGCACTCATAATACAATCACTA
CAATCAAAGTCTGTCAGAGATGTTGGTTTTGGCCAACAAGACCGAGGCGC
AGCGCATTTTGCATATTCTCGACGACACTTTGGAGGGGTTGACCTTGCTT
GGCGGCCTTCCCCTCGGCCTGCCATCCGATAAGCAAACCCTGCAGGCTTC
GCCGCAGATTTTGACCCTCTTTCAAAAGCACCACCAGCTTGAAATTGAAG
TCCTCAAGTCGCTGTCGTCGTCGTCGTCGCCGCCGTGGTCACCGTCGTCA
TCACCCTCGCCGACCCCCTTGCTCCCCTCTCTCTCCTCTGGCACCGATGT
GCCCATCCGAAAAAACACGCGATCCGCCCCTCTTTCAAGCCCTCTGTCCT
CACTCTCCTTTTCTCGTGAAGATAAAATCCACCATTTGTACCGGTCCATG
ACTGGCAACCTCGTGCGGGCTTTGCGTCGTAGGGATTACATTAACGACCA
CCCCACTTCTATCTCGCCTTCTACTGCTGCCTTTCTTGAAGTCCTGTACG
AGCTCAAGAGCCTCTTAGCGCAACGATTCTCCACCACCTTGCAAGAAGAC
TTACGACAGGCCAACACACTTGGCTTGTTGACGGGGAAAGAAAAATATGC
CTTGGACAGTCTGGCATCGCTGAGGCACACGTGGGTTACCAAGCAGCGGG
AGCAAGCCAAAGAGGCCACTGTCCTCCAAACATTGCGTCACAAGCTCGAG
ATAGAAGTGGCCGTAAGATCTGCTCAAGTCCAAGAGGAAGAAGAGATGAT
TGCACAGGAATTGGAGGCCATGTTGGAGCTGGCCGCGCAGCACCACGAGG
AGACGACGTCTTGCCTAACTCAGAGTATCGAGACATTAGTCCCAGAGCTA
ACCCGACATGCCGAGGAGCACACAAAGGCAGAAAATCTGGCTAGGGTCGA
GCAAAAGCAGCTAAAAAGAGAGCTAGCTGCCTTGATCCAGCACTATGAAA
GCACCTTGCAGCAGAAGCAAGCAGATTTGGGGCGGCTCCAGGCGACCGTG
ATGGCGGAGGACCACGAACTGCATGAGCTCCGAGGGCATTTTGAGGCAGT
TGAGAGTCAGGAAGCAGAGCTACGAGCAATGGAGAAGGCGCGACAGCTAC
GTGTGTTGGAGGGGGAGCGGATGCGTCACACTGCCATGTGTGCGATTCGC
ATACAGGCAATGTTTAGGGGGCACAAGGCTTTGGTGGCTTTCAAGGCACT
CAAGCTAGCTAGCAATCAAAAAGAAAATAAAAGCACCAAGAAGACGGGCA
AAAGGGGCAAAAAGGGAGAGAAAGCAAAGATGGGTGCAGGCGTGGCAGGA
AAAATGAAGGGAGCGCTCAAAGCAGGTGCCGCGGCAAAGACTAGTGTGGA
CACGAAGAAGAAACAGGCGACTGCAACCGGCACAACGAAGGCCGCGCCTG
TCGTCACTCCCAAGAAGGCAACGGTTGCTAAAAATAAGTAA

protein sequence of jgi.p|Nanoce1779_2|653819

>mRNA_7560-protein ID=mRNA_7560-protein|Name=jgi.p|Nanoce1779_2|653819|organism=Nannochloropsis oceanica|type=polypeptide|length=474bp
MLVLANKTEAQRILHILDDTLEGLTLLGGLPLGLPSDKQTLQASPQILTL
FQKHHQLEIEVLKSLSSSSSPPWSPSSSPSPTPLLPSLSSGTDVPIRKNT
RSAPLSSPLSSLSFSREDKIHHLYRSMTGNLVRALRRRDYINDHPTSISP
STAAFLEVLYELKSLLAQRFSTTLQEDLRQANTLGLLTGKEKYALDSLAS
LRHTWVTKQREQAKEATVLQTLRHKLEIEVAVRSAQVQEEEEMIAQELEA
MLELAAQHHEETTSCLTQSIETLVPELTRHAEEHTKAENLARVEQKQLKR
ELAALIQHYESTLQQKQADLGRLQATVMAEDHELHELRGHFEAVESQEAE
LRAMEKARQLRVLEGERMRHTAMCAIRIQAMFRGHKALVAFKALKLASNQ
KENKSTKKTGKRGKKGEKAKMGAGVAGKMKGALKAGAAAKTSVDTKKKQA
TATGTTKAAPVVTPKKATVAKNK*

mRNA from alignment at scaffold_20:253454..254944+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7560 ID=mRNA_7560|Name=jgi.p|Nanoce1779_2|653819|organism=Nannochloropsis oceanica|type=mRNA|length=1491bp|location=Sequence derived from alignment at scaffold_20:253454..254944+ (Nannochloropsis oceanica)
CAGATATCTATCATATATTCTTTGAGCTGGCACTCATAATACAATCACTA
CAATCAAAGTCTGTCAGAGATGTTGGTTTTGGCCAACAAGACCGAGGCGC
AGCGCATTTTGCATATTCTCGACGACACTTTGGAGGGGTTGACCTTGCTT
GGCGGCCTTCCCCTCGGCCTGCCATCCGATAAGCAAACCCTGCAGGCTTC
GCCGCAGATTTTGACCCTCTTTCAAAAGCACCACCAGCTTGAAATTGAAG
TCCTCAAGTCGCTGTCGTCGTCGTCGTCGCCGCCGTGGTCACCGTCGTCA
TCACCCTCGCCGACCCCCTTGCTCCCCTCTCTCTCCTCTGGCACCGATGT
GCCCATCCGAAAAAACACGCGATCCGCCCCTCTTTCAAGCCCTCTGTCCT
CACTCTCCTTTTCTCGTGAAGATAAAATCCACCATTTGTACCGGTCCATG
ACTGGCAACCTCGTGCGGGCTTTGCGTCGTAGGGATTACATTAACGACCA
CCCCACTTCTATCTCGCCTTCTACTGCTGCCTTTCTTGAAGTCCTGTACG
AGCTCAAGAGCCTCTTAGCGCAACGATTCTCCACCACCTTGCAAGAAGAC
TTACGACAGGCCAACACACTTGGCTTGTTGACGGGGAAAGAAAAATATGC
CTTGGACAGTCTGGCATCGCTGAGGCACACGTGGGTTACCAAGCAGCGGG
AGCAAGCCAAAGAGGCCACTGTCCTCCAAACATTGCGTCACAAGCTCGAG
ATAGAAGTGGCCGTAAGATCTGCTCAAGTCCAAGAGGAAGAAGAGATGAT
TGCACAGGAATTGGAGGCCATGTTGGAGCTGGCCGCGCAGCACCACGAGG
AGACGACGTCTTGCCTAACTCAGAGTATCGAGACATTAGTCCCAGAGCTA
ACCCGACATGCCGAGGAGCACACAAAGGCAGAAAATCTGGCTAGGGTCGA
GCAAAAGCAGCTAAAAAGAGAGCTAGCTGCCTTGATCCAGCACTATGAAA
GCACCTTGCAGCAGAAGCAAGCAGATTTGGGGCGGCTCCAGGCGACCGTG
ATGGCGGAGGACCACGAACTGCATGAGCTCCGAGGGCATTTTGAGGCAGT
TGAGAGTCAGGAAGCAGAGCTACGAGCAATGGAGAAGGCGCGACAGCTAC
GTGTGTTGGAGGGGGAGCGGATGCGTCACACTGCCATGTGTGCGATTCGC
ATACAGGCAATGTTTAGGGGGCACAAGGCTTTGGTGGCTTTCAAGGCACT
CAAGCTAGCTAGCAATCAAAAAGAAAATAAAAGCACCAAGAAGACGGGCA
AAAGGGGCAAAAAGGGAGAGAAAGCAAAGATGGGTGCAGGCGTGGCAGGA
AAAATGAAGGGAGCGCTCAAAGCAGGTGCCGCGGCAAAGACTAGTGTGGA
CACGAAGAAGAAACAGGCGACTGCAACCGGCACAACGAAGGCCGCGCCTG
TCGTCACTCCCAAGAAGGCAACGGTTGCTAAAAATAAGTAA

Coding sequence (CDS) from alignment at scaffold_20:253454..254944+

>mRNA_7560 ID=mRNA_7560|Name=jgi.p|Nanoce1779_2|653819|organism=Nannochloropsis oceanica|type=CDS|length=1422bp|location=Sequence derived from alignment at scaffold_20:253454..254944+ (Nannochloropsis oceanica)
ATGTTGGTTTTGGCCAACAAGACCGAGGCGCAGCGCATTTTGCATATTCT
CGACGACACTTTGGAGGGGTTGACCTTGCTTGGCGGCCTTCCCCTCGGCC
TGCCATCCGATAAGCAAACCCTGCAGGCTTCGCCGCAGATTTTGACCCTC
TTTCAAAAGCACCACCAGCTTGAAATTGAAGTCCTCAAGTCGCTGTCGTC
GTCGTCGTCGCCGCCGTGGTCACCGTCGTCATCACCCTCGCCGACCCCCT
TGCTCCCCTCTCTCTCCTCTGGCACCGATGTGCCCATCCGAAAAAACACG
CGATCCGCCCCTCTTTCAAGCCCTCTGTCCTCACTCTCCTTTTCTCGTGA
AGATAAAATCCACCATTTGTACCGGTCCATGACTGGCAACCTCGTGCGGG
CTTTGCGTCGTAGGGATTACATTAACGACCACCCCACTTCTATCTCGCCT
TCTACTGCTGCCTTTCTTGAAGTCCTGTACGAGCTCAAGAGCCTCTTAGC
GCAACGATTCTCCACCACCTTGCAAGAAGACTTACGACAGGCCAACACAC
TTGGCTTGTTGACGGGGAAAGAAAAATATGCCTTGGACAGTCTGGCATCG
CTGAGGCACACGTGGGTTACCAAGCAGCGGGAGCAAGCCAAAGAGGCCAC
TGTCCTCCAAACATTGCGTCACAAGCTCGAGATAGAAGTGGCCGTAAGAT
CTGCTCAAGTCCAAGAGGAAGAAGAGATGATTGCACAGGAATTGGAGGCC
ATGTTGGAGCTGGCCGCGCAGCACCACGAGGAGACGACGTCTTGCCTAAC
TCAGAGTATCGAGACATTAGTCCCAGAGCTAACCCGACATGCCGAGGAGC
ACACAAAGGCAGAAAATCTGGCTAGGGTCGAGCAAAAGCAGCTAAAAAGA
GAGCTAGCTGCCTTGATCCAGCACTATGAAAGCACCTTGCAGCAGAAGCA
AGCAGATTTGGGGCGGCTCCAGGCGACCGTGATGGCGGAGGACCACGAAC
TGCATGAGCTCCGAGGGCATTTTGAGGCAGTTGAGAGTCAGGAAGCAGAG
CTACGAGCAATGGAGAAGGCGCGACAGCTACGTGTGTTGGAGGGGGAGCG
GATGCGTCACACTGCCATGTGTGCGATTCGCATACAGGCAATGTTTAGGG
GGCACAAGGCTTTGGTGGCTTTCAAGGCACTCAAGCTAGCTAGCAATCAA
AAAGAAAATAAAAGCACCAAGAAGACGGGCAAAAGGGGCAAAAAGGGAGA
GAAAGCAAAGATGGGTGCAGGCGTGGCAGGAAAAATGAAGGGAGCGCTCA
AAGCAGGTGCCGCGGCAAAGACTAGTGTGGACACGAAGAAGAAACAGGCG
ACTGCAACCGGCACAACGAAGGCCGCGCCTGTCGTCACTCCCAAGAAGGC
AACGGTTGCTAAAAATAAGTAA

Synonyms

Publications