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Properties
| Property Name | Value |
|---|
| TranscriptId | 599270 |
| Track | FilteredModels2 |
| ProteinId | 599184 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_20 | supercontig | scaffold_20:251390..253378 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_7559 ID=mRNA_7559|Name=jgi.p|Nanoce1779_2|599184|organism=Nannochloropsis oceanica|type=mRNA|length=1769bp
CAGGAGGTTGTCAGCACGCAAATCTTCTGGCGCGCGTTTCGTGTGTCGAT
GCGTGGCATGTGCGCCTGTCAAATGTTTCTACGGCCGGAAACATAAGTTA
ATAATTCATAACTGGCGTGAATCAGGGATCTAAATGTCTTGTCATGACCT
CATAATGGCGTGCAATTGAGGTACACCGCAGTAAGGCATCATCTAACAGC
TCATCTTCATCTTCATCTACCTCTCCGACAGGCCCGAGACACTTATTTTC
CTTCTCTACACATCCAAATTCGCACAGAATTTGAACCTCAACAAGAACTT
TAACATGTCTCACACTGTCAAGGCCCGCGACAGGCCCGAGGACCTCGCGG
CAGAGATGTACCCTGCACCAATCAATCCTGCTGTCATTTATGCTGCTGGC
GGGCCCGCGGGCTACCACCAAGCACCGGTCACGATGCCACAGGCTGTTTA
TGATATCGGTGGCGGTGATTTTTATGGGGGCTGCCAAAGGTATTCTGCGA
CACAACCCGCGTATGCCATGGCGCACCCCACCTACTCGACGGCGGCCGTG
CCGACCTTTATGGGCCAGTCTGCCACGGTACATGGCGTGGGGGGCCACGT
ACAGCACTACGGTGGTCTATCGGATGCCCCCCCATCGCAGTTCCAGCAAC
AATCGCCGCATTGCCTCCCGCCGCATCGACCAAATCACGCGGCTGGTGGA
CGCACGCCATATTCTGTCAAGCCTACCGCCGTTCAGCACGATGTTGAGGC
GGGCGGGTTTGGGGAGCAGACGGTTTCGCCTTTTATGGCCAAGGCGGAGA
AACAGATGCGTATGGCGTTCATTCGCAAGGTCTATACTATTTTGTCATGT
CAGCTGCTGTTGAGTGCCTTGTTCTGCGCATATGTGACGCTTGACGGCGC
GGCAAATGCCTTTGTCTTGTCGCACCAAGGTTTGTACGTGCTGGGAATCG
TGGCATCGGTCGTGGTGCTGCTGTTATTAATGTGCTACCGGAGTTATTAC
CCAGTCAACTTGGGATTGCTTGCGATTTGGACGTTCTGTGAGGCGTATAC
GATTGGTATTGTCACAGCTACATTTGCGCGTGCGGGGGAAGGGGAGCTGG
TGGTCCAAGCGTTGGCGATCACGTTTGTCGTATTCTTTGCCCTGACCATC
TTTACCTTTCAGGCCAAGATTGACTTTTCGTTCCTTGGTGGTATTCTTTT
TGCTTCGACCTGGGTGCTGATCATATGGGGAATAATTGGAGCTATCTTTG
GATTCCGCCCAGGCTTTATATACAGTTTGCTTGGCGCTGTCCTGTTTTCA
TTGTACATCGTCTTTGACACCTACATGCTGATGGAGAAACTGGATTATTC
GGAATGGCTGCTTGCTTCCATCTCTTTATATCTCGACATAATTAATCTCT
TCCTCTTCATTCTGCAAATGCTCGTCGAGAGCCGGAGACGGCAGGAATAA
CGACAGACCCCTTCTGCCTTCTCACCCTCCGTCCGTGATTTCGAGAAAAG
GTGAATGTGCGTAAACGTTGGACGTTGCATGCCTCTTTAATCTTCCAGGT
TGGCCTCCCATGTATATGACGCAACGTCAAGAAAAGGAGGCGAGGGTCCG
TTTACAGAGGCATCGAAATGAATTACCGCAATGCTGGCTTTAGATCGATA
GCCCAAAGACGAACATGTAAACCTAATATTTATTCTGCATGATCACAAGA
GCTTGATAAAGAGTGGTCCACAATTAAAGGACAGCAAGAATAGAAATATA
GAGATTAGAACCTCTGAGA back to topprotein sequence of jgi.p|Nanoce1779_2|599184 >mRNA_7559-protein ID=mRNA_7559-protein|Name=jgi.p|Nanoce1779_2|599184|organism=Nannochloropsis oceanica|type=polypeptide|length=382bp
MSHTVKARDRPEDLAAEMYPAPINPAVIYAAGGPAGYHQAPVTMPQAVYD
IGGGDFYGGCQRYSATQPAYAMAHPTYSTAAVPTFMGQSATVHGVGGHVQ
HYGGLSDAPPSQFQQQSPHCLPPHRPNHAAGGRTPYSVKPTAVQHDVEAG
GFGEQTVSPFMAKAEKQMRMAFIRKVYTILSCQLLLSALFCAYVTLDGAA
NAFVLSHQGLYVLGIVASVVVLLLLMCYRSYYPVNLGLLAIWTFCEAYTI
GIVTATFARAGEGELVVQALAITFVVFFALTIFTFQAKIDFSFLGGILFA
STWVLIIWGIIGAIFGFRPGFIYSLLGAVLFSLYIVFDTYMLMEKLDYSE
WLLASISLYLDIINLFLFILQMLVESRRRQE* back to topmRNA from alignment at scaffold_20:251390..253378- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_7559 ID=mRNA_7559|Name=jgi.p|Nanoce1779_2|599184|organism=Nannochloropsis oceanica|type=mRNA|length=1989bp|location=Sequence derived from alignment at scaffold_20:251390..253378- (Nannochloropsis oceanica)
CAGGAGGTTGTCAGCACGCAAATCTTCTGGCGCGCGTTTCGTGTGTCGAT
GCGTGGCATGTGCGCCTGTCAAATGTTTCTACGGCCGGAAACATAAGTTA
ATAATTCATAACTGGCGTGAATCAGGGATCTAAATGTCTTGTCATGACCT
CATAATGGCGTGCAATTGAGGTACACCGCAGTAAGGCATCATCTAACAGC
TCATCTTCATCTTCATCTACCTCTCCGACAGGCCCGAGACACTTATTTTC
CTTCTCTACACATCCAAATTCGCACAGAATTTGAACCTCAACAAGAACTT
TAACATGTCTCACACTGTCAAGGCCCGCGACAGGCCCGAGGACCTCGCGG
CAGAGATGTACCCTGCACCAATCAATCCTGCTGTCATTTATGCTGCTGGC
GGGCCCGCGGGCTACCACCAAGCACCGGTCACGATGCCACAGGCTGTTTA
TGATATCGGTGGCGGTGATTTTTATGGGGGCTGCCAAAGGTATTCTGCGA
CACAACCCGCGTATGCCATGGCGCACCCCACCTACTCGACGGCGGCCGTG
CCGACCTTTATGGGCCAGTCTGCCACGGTACATGGCGTGGGGGGCCACGT
ACAGCACTACGGTGGTCTATCGGATGCCCCCCCATCGCAGTTCCAGCAAC
AATCGCCGCATTGCCTCCCGCCGCATCGACCAAATCACGCGGCTGGTGGA
CGCACGCCATATTCTGTCAAGCCTACCGCCGTTCAGCACGATGTTGAGGC
GGGCGGGTTTGGGGAGCAGACGGTTTCGCCTTTTATGGCCAAGGCGGAGA
AACAGATGCGTATGGCGTTCATTCGCAAGGTCTATACTATTTTGTCATGT
CAGCTGCTGTTGAGTGCCTTGTTCTGCGCATATGTGACGCTTGACGGCGC
GGCAAATGCCTTTGTCTTGTCGCACCAAGGTTTGTACGTGCTGGGAATCG
TGGCATCGGTCGTGGTGCTGCTGTTATTAATGTGCTACCGGAGTTATTAC
CCAGTCAACTTGGGATTGCTTGCGATTTGGACGTTCTGTGAGGCGTATAC
GATTGGTATTGTCACAGCTACATTTGCGCGTGCGGGGGAAGGGGAGCTGG
TGGTCCAAGCGTTGGCGATCACGTTTGTCGTATTCTTTGCCCTGACCATC
TTTACCTTTCAGGCCAAGATTGACTTTTCGTTCCTTGGTGGTATTCTTTT
TGCTTCGACCTGGGTGCTGATCATATGGGGAATAATTGGAGCTATCTTTG
GATTCCGCCCAGGTGCGTCAAGGAATGAGACTGAAGATGTGTCCAATGCC
CTGCCTCTCGTCTCTAGTCATGCTCATTCTCAATCCCATCCACGCAGGCT
TTATATACAGTTTGCTTGGCGCTGTCCTGTTTTCATTGTACATCGTCTTT
GACACCTACATGCTGATGGAGAAACTGGATTATTCGGAATGGCTGCTTGC
TTCCATCTCTTTATATCTCGTGAGTTTTTGTGTGCGCCTTATCCCTGGGT
TGATGTGGGTGCTAACGTTACCTAGCGAATGTGTTTGATCTTACCTCGCG
CTGCCACTCATGGAATCTTTCTCTTATGTCTCTGTCTGCTTTGAAACAAA
ATAGGACATAATTAATCTCTTCCTCTTCATTCTGCAAATGCTCGTCGAGA
GCCGGAGACGGCAGGAATAACGACAGACCCCTTCTGCCTTCTCACCCTCC
GTCCGTGATTTCGAGAAAAGGTGAATGTGCGTAAACGTTGGACGTTGCAT
GCCTCTTTAATCTTCCAGGTTGGCCTCCCATGTATATGACGCAACGTCAA
GAAAAGGAGGCGAGGGTCCGTTTACAGAGGCATCGAAATGAATTACCGCA
ATGCTGGCTTTAGATCGATAGCCCAAAGACGAACATGTAAACCTAATATT
TATTCTGCATGATCACAAGAGCTTGATAAAGAGTGGTCCACAATTAAAGG
ACAGCAAGAATAGAAATATAGAGATTAGAACCTCTGAGA back to topCoding sequence (CDS) from alignment at scaffold_20:251390..253378- >mRNA_7559 ID=mRNA_7559|Name=jgi.p|Nanoce1779_2|599184|organism=Nannochloropsis oceanica|type=CDS|length=3438bp|location=Sequence derived from alignment at scaffold_20:251390..253378- (Nannochloropsis oceanica)
GACATAATTAATCTCTTCCTCTTCATTCTGCAAATGCTCGTCGAGAGCCG
GAGACGGCAGGAATAAGCTTTATATACAGTTTGCTTGGCGCTGTCCTGTT
TTCATTGTACATCGTCTTTGACACCTACATGCTGATGGAGAAACTGGATT
ATTCGGAATGGCTGCTTGCTTCCATCTCTTTATATCTCATGTCTCACACT
GTCAAGGCCCGCGACAGGCCCGAGGACCTCGCGGCAGAGATGTACCCTGC
ACCAATCAATCCTGCTGTCATTTATGCTGCTGGCGGGCCCGCGGGCTACC
ACCAAGCACCGGTCACGATGCCACAGGCTGTTTATGATATCGGTGGCGGT
GATTTTTATGGGGGCTGCCAAAGGTATTCTGCGACACAACCCGCGTATGC
CATGGCGCACCCCACCTACTCGACGGCGGCCGTGCCGACCTTTATGGGCC
AGTCTGCCACGGTACATGGCGTGGGGGGCCACGTACAGCACTACGGTGGT
CTATCGGATGCCCCCCCATCGCAGTTCCAGCAACAATCGCCGCATTGCCT
CCCGCCGCATCGACCAAATCACGCGGCTGGTGGACGCACGCCATATTCTG
TCAAGCCTACCGCCGTTCAGCACGATGTTGAGGCGGGCGGGTTTGGGGAG
CAGACGGTTTCGCCTTTTATGGCCAAGGCGGAGAAACAGATGCGTATGGC
GTTCATTCGCAAGGTCTATACTATTTTGTCATGTCAGCTGCTGTTGAGTG
CCTTGTTCTGCGCATATGTGACGCTTGACGGCGCGGCAAATGCCTTTGTC
TTGTCGCACCAAGGTTTGTACGTGCTGGGAATCGTGGCATCGGTCGTGGT
GCTGCTGTTATTAATGTGCTACCGGAGTTATTACCCAGTCAACTTGGGAT
TGCTTGCGATTTGGACGTTCTGTGAGGCGTATACGATTGGTATTGTCACA
GCTACATTTGCGCGTGCGGGGGAAGGGGAGCTGGTGGTCCAAGCGTTGGC
GATCACGTTTGTCGTATTCTTTGCCCTGACCATCTTTACCTTTCAGGCCA
AGATTGACTTTTCGTTCCTTGGTGGTATTCTTTTTGCTTCGACCTGGGTG
CTGATCATATGGGGAATAATTGGAGCTATCTTTGGATTCCGCCCAGGACA
TAATTAATCTCTTCCTCTTCATTCTGCAAATGCTCGTCGAGAGCCGGAGA
CGGCAGGAATAAGCTTTATATACAGTTTGCTTGGCGCTGTCCTGTTTTCA
TTGTACATCGTCTTTGACACCTACATGCTGATGGAGAAACTGGATTATTC
GGAATGGCTGCTTGCTTCCATCTCTTTATATCTCATGTCTCACACTGTCA
AGGCCCGCGACAGGCCCGAGGACCTCGCGGCAGAGATGTACCCTGCACCA
ATCAATCCTGCTGTCATTTATGCTGCTGGCGGGCCCGCGGGCTACCACCA
AGCACCGGTCACGATGCCACAGGCTGTTTATGATATCGGTGGCGGTGATT
TTTATGGGGGCTGCCAAAGGTATTCTGCGACACAACCCGCGTATGCCATG
GCGCACCCCACCTACTCGACGGCGGCCGTGCCGACCTTTATGGGCCAGTC
TGCCACGGTACATGGCGTGGGGGGCCACGTACAGCACTACGGTGGTCTAT
CGGATGCCCCCCCATCGCAGTTCCAGCAACAATCGCCGCATTGCCTCCCG
CCGCATCGACCAAATCACGCGGCTGGTGGACGCACGCCATATTCTGTCAA
GCCTACCGCCGTTCAGCACGATGTTGAGGCGGGCGGGTTTGGGGAGCAGA
CGGTTTCGCCTTTTATGGCCAAGGCGGAGAAACAGATGCGTATGGCGTTC
ATTCGCAAGGTCTATACTATTTTGTCATGTCAGCTGCTGTTGAGTGCCTT
GTTCTGCGCATATGTGACGCTTGACGGCGCGGCAAATGCCTTTGTCTTGT
CGCACCAAGGTTTGTACGTGCTGGGAATCGTGGCATCGGTCGTGGTGCTG
CTGTTATTAATGTGCTACCGGAGTTATTACCCAGTCAACTTGGGATTGCT
TGCGATTTGGACGTTCTGTGAGGCGTATACGATTGGTATTGTCACAGCTA
CATTTGCGCGTGCGGGGGAAGGGGAGCTGGTGGTCCAAGCGTTGGCGATC
ACGTTTGTCGTATTCTTTGCCCTGACCATCTTTACCTTTCAGGCCAAGAT
TGACTTTTCGTTCCTTGGTGGTATTCTTTTTGCTTCGACCTGGGTGCTGA
TCATATGGGGAATAATTGGAGCTATCTTTGGATTCCGCCCAGGACATAAT
TAATCTCTTCCTCTTCATTCTGCAAATGCTCGTCGAGAGCCGGAGACGGC
AGGAATAAGCTTTATATACAGTTTGCTTGGCGCTGTCCTGTTTTCATTGT
ACATCGTCTTTGACACCTACATGCTGATGGAGAAACTGGATTATTCGGAA
TGGCTGCTTGCTTCCATCTCTTTATATCTCATGTCTCACACTGTCAAGGC
CCGCGACAGGCCCGAGGACCTCGCGGCAGAGATGTACCCTGCACCAATCA
ATCCTGCTGTCATTTATGCTGCTGGCGGGCCCGCGGGCTACCACCAAGCA
CCGGTCACGATGCCACAGGCTGTTTATGATATCGGTGGCGGTGATTTTTA
TGGGGGCTGCCAAAGGTATTCTGCGACACAACCCGCGTATGCCATGGCGC
ACCCCACCTACTCGACGGCGGCCGTGCCGACCTTTATGGGCCAGTCTGCC
ACGGTACATGGCGTGGGGGGCCACGTACAGCACTACGGTGGTCTATCGGA
TGCCCCCCCATCGCAGTTCCAGCAACAATCGCCGCATTGCCTCCCGCCGC
ATCGACCAAATCACGCGGCTGGTGGACGCACGCCATATTCTGTCAAGCCT
ACCGCCGTTCAGCACGATGTTGAGGCGGGCGGGTTTGGGGAGCAGACGGT
TTCGCCTTTTATGGCCAAGGCGGAGAAACAGATGCGTATGGCGTTCATTC
GCAAGGTCTATACTATTTTGTCATGTCAGCTGCTGTTGAGTGCCTTGTTC
TGCGCATATGTGACGCTTGACGGCGCGGCAAATGCCTTTGTCTTGTCGCA
CCAAGGTTTGTACGTGCTGGGAATCGTGGCATCGGTCGTGGTGCTGCTGT
TATTAATGTGCTACCGGAGTTATTACCCAGTCAACTTGGGATTGCTTGCG
ATTTGGACGTTCTGTGAGGCGTATACGATTGGTATTGTCACAGCTACATT
TGCGCGTGCGGGGGAAGGGGAGCTGGTGGTCCAAGCGTTGGCGATCACGT
TTGTCGTATTCTTTGCCCTGACCATCTTTACCTTTCAGGCCAAGATTGAC
TTTTCGTTCCTTGGTGGTATTCTTTTTGCTTCGACCTGGGTGCTGATCAT
ATGGGGAATAATTGGAGCTATCTTTGGATTCCGCCCAG back to top
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