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Properties
| Property Name | Value |
|---|
| TranscriptId | 599252 |
| Track | FilteredModels2 |
| ProteinId | 599166 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_20 | supercontig | scaffold_20:244439..246965 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_7557 ID=mRNA_7557|Name=jgi.p|Nanoce1779_2|599166|organism=Nannochloropsis oceanica|type=mRNA|length=1616bp
CAGACGGGCAAGCCAGCATCATAATCTGCTCCTCCACATCGTAGAAGCCA
GCTACCACTTCATTAACTGCAGCACCAGCCCAATCACAACATGTCGACGA
TCCAAAAAATCGCCGAGTTGGAAGCCGAGTACGCCAAGACCCAAAAGAAC
AAGGCGACCAACTATCATCTCGGCCTTATCAAAGCCAAGCTTGCCAAGCT
CCGTCGTGAGCTGATTGAACCCACCGGCGGCGGTGGAGGGAAAGGAGGGG
ATGGCTTCGACGTGGCCAAGTCAGGCGACACCCGTGTGGGTCTGGTGGGC
TTTCCATCAGTAGGGAAATCGACCCTGTTGACGAAGCTCACGGGCACATT
TTCCGAGGCGGCCTCTTATGAGTTTACTACTTTGACGGCAATTCCAGGCA
CGCTGCATTACCGGGGGGCGAGGATCCAGATTGTGGATCTACCGGGGATT
ATCGAGGGAGCGAAGGACGGCAAAGGCCGTGGTCGTCAAGTCATTTCCGC
AGCGCGTACATGCAACATTATTCTCGTCGTCCTCGACGTGGCTAAGCCCG
CCACCCATAAAATCTTGATCGAACGTGAGCTGGATGGATTTGGCATTCGC
CTGAACCAGGAGCCTCCGCGCATCATGTTCCGGAAGAAGGACAAGGGCGG
AATTAATTATCAAGCCTTTGTGCCTCAGACGTCTCTCGACGCCGAGGCGG
TGACGGCGATTTGCCGGGAGTACAAGATTCACAATGCGGATGTGCACTTG
CGGTGTGACGCCACGGTGGACCAGATAATTGACGTGGTTGAGGGCAATAG
GAAGTACATGCCCGCCGTGTACGTGCTTAACAAAATTGACCAAATCTCGG
TGGAGGAGCTGGACATCATCAGCCGCCTCCCCCACTGTGTCCCCATCTCC
GCTTCGCATGGATGGAACCTCGATGAGCTCATCGACCAAGTCTGGGATGA
GTGTAAGATGATCCGGATCTACACCAAGCCCAAAGGCCAAATCCCTGACT
ACACCGCACCGGTAATTCTCCATTCCCACCATCCCTCCGTCGAGGATTTC
TGCAACCGCATCCATCGCACATTGATAAGTTCTTTTAAGTATGCCTGGGT
TTGGGGCTCGAGCGTGAAGCACCAACCGCAAAGGGTGGGGAAAGATCATA
TTCTTGCCGATGAGGATGTTGTGCAAATCGTGAAAAAGAGTGGATAGAAG
GAGAAATAGACGGAGAGAGACAGAGACAAACAGAAAGAGCCATAGAGAAA
GACAGAGAGAACTAGATACAGAGAGTGAGAGGGGGGAAGACAGGGAGAGG
GAGGAGAGAGAGGCGAGGGAGAGTATGAGAGAGGCGACAATATTTTCGAC
TACGGAAAAAGATGGTCACTCTATTGCCTGAGGACAGCTACAACAGCAGT
AGTAGCAGAGGCAGCAGCAGCAGGAGCCTCCTGCATCATTGAAGCGCTCA
TGTGCAGGAAGGACAAGAGAAAGGAGGGGAAAATCGCAGCGAACGACGAG
GCGGGGAAAGGGCATAGGGACGAGGGATGAAGAGGGGTGAAGGAATAAGG
GATGACGGAAGGGAAGAGACTTAAGAAAGAAGAAGTAGGACTTGTAATTG
TACCCCTAAATCCGGA back to topprotein sequence of jgi.p|Nanoce1779_2|599166 >mRNA_7557-protein ID=mRNA_7557-protein|Name=jgi.p|Nanoce1779_2|599166|organism=Nannochloropsis oceanica|type=polypeptide|length=369bp
MSTIQKIAELEAEYAKTQKNKATNYHLGLIKAKLAKLRRELIEPTGGGGG
KGGDGFDVAKSGDTRVGLVGFPSVGKSTLLTKLTGTFSEAASYEFTTLTA
IPGTLHYRGARIQIVDLPGIIEGAKDGKGRGRQVISAARTCNIILVVLDV
AKPATHKILIERELDGFGIRLNQEPPRIMFRKKDKGGINYQAFVPQTSLD
AEAVTAICREYKIHNADVHLRCDATVDQIIDVVEGNRKYMPAVYVLNKID
QISVEELDIISRLPHCVPISASHGWNLDELIDQVWDECKMIRIYTKPKGQ
IPDYTAPVILHSHHPSVEDFCNRIHRTLISSFKYAWVWGSSVKHQPQRVG
KDHILADEDVVQIVKKSG* back to topmRNA from alignment at scaffold_20:244439..246965- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_7557 ID=mRNA_7557|Name=jgi.p|Nanoce1779_2|599166|organism=Nannochloropsis oceanica|type=mRNA|length=2527bp|location=Sequence derived from alignment at scaffold_20:244439..246965- (Nannochloropsis oceanica)
CAGACGGGCAAGCCAGCATCATAATCTGCTCCTCCACATCGTAGAAGCCA
GCTACCACTTCATTAACTGCAGCACCAGCCCAATCACAACATGTCGACGA
TCCAAGTAAGTTTAGGGAGAACTAAATCTGTCGTTTCTAGTACTTTGTTT
TTCACAGCGCCATGCCCGTTTCCTTGGTTTTCACCCTCGCCCCATGTAGA
AGGGAACCTCCCTCCCTCTTTTTTTCCCCGTAGCCCCCCTCTGCAACAAC
TTCTGCCTGCCAAGCACGAAGAGTTTTTGTTCTTTCTTTCTGTTCTTTCA
AGAGCCTTCCTGTTCCAGCACTGCTTCTCTCCGTATCTCCCCCTTGACCA
TTTCTCCCATCCTCACATCCCCTCCCGACAGAAAATCGCCGAGTTGGAAG
CCGAGTACGCCAAGACCCAAAAGAACAAGGCGACCAACTATCATCTCGGC
CTTATCAAAGCCAAGCTTGCCAAGCTCCGTCGTGAGCTGATTGAACCCAC
CGGCGGCGGTGGAGGGAAAGGAGGGGATGGCTTCGACGTGGCCAAGTCAG
GCGACACCCGTGTGGGTCTGGTGGGCTTTCCATCAGTAGGGAAATCGACC
CTGTTGACGAAGCTCACGGGCACATTTTCCGAGGCGGCCTCTTATGAGTT
TACTACTTTGACGGCAATTCCAGGCACGCTGCATTACCGGGGGGCGAGGA
TCCAGATTGTGGATCTACCGGGGATTATCGAGGGAGCGAAGGACGGCAAA
GGCAAGTTCATCTTCCCTCCTTCCCTCCTCCTCTCCCCCTCTCCCCTGAG
TCCGCGAAGGAAGAATTCGGGCTTTGCCTCTTGTTCATCAAATGATTTCT
CTAGCGTTTTCATGCATTATAATCTTTTTTGTGCTCCCGGCCGGCCACGT
CCAAAATCCTCTGCTTTTGCTCACCCCTCCCTCCCTCTTGCCCTCCCTCC
CTCCCTTCCTCCCTTGCCCCATCCTATGATAGGCCGTGGTCGTCAAGTCA
TTTCCGCAGCGCGTACATGCAACATTATTCTCGTCGTCCTCGACGTGGCT
AAGCCCGCCACCCATAAAATCTTGATCGAACGTGAGCTGGATGGATTTGG
CATTCGCCTGAACCAGGAGCCTCCGCGCATCATGTTCCGGAAGAAGGACA
AGGGCGGAATTAATTATCAAGCCTTTGTGCCTCAGACGTCTCTCGACGCC
GAGGCGGTGACGGCGATTTGCCGGGAGTACAAGATTCACAATGCGGATGT
GCACTTGCGGTGTGACGCCACGGTGGACCAGATAATTGACGTGGTTGAGG
GCAATAGGAAGGTGGGGAATCTCGGGGGAGGGAAAGAGGGAGGGAGGGAA
AGAGGAAGGGAAGGAAGGAGGGAGGGAAAGAGGGAGGGAAGGAGGGATGA
AAGGATTAGAAGCTCAGCTTTTATTTTACTGCTTTCCTCTTTTTATGAAA
AAAAAGACTTCATCTTGGTGACCTTAATCCTCCCTCCCTCTCTCCCTTCC
TCCCTTCCTCCCTTCCTCCCTCCCTCCTTCTCCCACCACGTACAGTACAT
GCCCGCCGTGTACGTGCTTAACAAAATTGACCAAATCTCGGTGGAGGAGC
TGGACATCATCAGCCGCCTCCCCCACTGTGTCCCCATCTCCGCTTCGCAT
GGATGGAACCTCGATGAGCTCATCGACCAAGTCTGGGATGAGTGTAAGAT
GATCCGGATCTACACCAAGCCCAAAGGCCAAATCCCTGACTACACCGCAC
CGGTACGCACCTCACCTCCCCCCCCCATCCCTCCTTCTCTCTTTTCTGAA
CGAATCCGTCGCACGTTGATGAACTCTGTGACGTACGTCTGATGGTGCAA
GTCCTTTATCCATATGCTCACCCCCTACCACCTTTCCCTTTCTCCTCCCT
CCCCTCCCTTCTCTCCCGCCAGGTAATTCTCCATTCCCACCATCCCTCCG
TCGAGGATTTCTGCAACCGCATCCATCGCACATTGATAAGTTCTTTTAAG
TATGCCTGGGTTTGGGGCTCGAGCGTGAAGCACCAACCGCAAAGGGTGGG
GAAAGATCATATTCTTGCCGATGAGGATGTTGTGCAAATCGTGAAAAAGA
GTGGATAGAAGGAGAAATAGACGGAGAGAGACAGAGACAAACAGAAAGAG
CCATAGAGAAAGACAGAGAGAACTAGATACAGAGAGTGAGAGGGGGGAAG
ACAGGGAGAGGGAGGAGAGAGAGGCGAGGGAGAGTATGAGAGAGGCGACA
ATATTTTCGACTACGGAAAAAGATGGTCACTCTATTGCCTGAGGACAGCT
ACAACAGCAGTAGTAGCAGAGGCAGCAGCAGCAGGAGCCTCCTGCATCAT
TGAAGCGCTCATGTGCAGGAAGGACAAGAGAAAGGAGGGGAAAATCGCAG
CGAACGACGAGGCGGGGAAAGGGCATAGGGACGAGGGATGAAGAGGGGTG
AAGGAATAAGGGATGACGGAAGGGAAGAGACTTAAGAAAGAAGAAGTAGG
ACTTGTAATTGTACCCCTAAATCCGGA back to topCoding sequence (CDS) from alignment at scaffold_20:244439..246965- >mRNA_7557 ID=mRNA_7557|Name=jgi.p|Nanoce1779_2|599166|organism=Nannochloropsis oceanica|type=CDS|length=5535bp|location=Sequence derived from alignment at scaffold_20:244439..246965- (Nannochloropsis oceanica)
GTAATTCTCCATTCCCACCATCCCTCCGTCGAGGATTTCTGCAACCGCAT
CCATCGCACATTGATAAGTTCTTTTAAGTATGCCTGGGTTTGGGGCTCGA
GCGTGAAGCACCAACCGCAAAGGGTGGGGAAAGATCATATTCTTGCCGAT
GAGGATGTTGTGCAAATCGTGAAAAAGAGTGGATAGTACATGCCCGCCGT
GTACGTGCTTAACAAAATTGACCAAATCTCGGTGGAGGAGCTGGACATCA
TCAGCCGCCTCCCCCACTGTGTCCCCATCTCCGCTTCGCATGGATGGAAC
CTCGATGAGCTCATCGACCAAGTCTGGGATGAGTGTAAGATGATCCGGAT
CTACACCAAGCCCAAAGGCCAAATCCCTGACTACACCGCACCGGCCGTGG
TCGTCAAGTCATTTCCGCAGCGCGTACATGCAACATTATTCTCGTCGTCC
TCGACGTGGCTAAGCCCGCCACCCATAAAATCTTGATCGAACGTGAGCTG
GATGGATTTGGCATTCGCCTGAACCAGGAGCCTCCGCGCATCATGTTCCG
GAAGAAGGACAAGGGCGGAATTAATTATCAAGCCTTTGTGCCTCAGACGT
CTCTCGACGCCGAGGCGGTGACGGCGATTTGCCGGGAGTACAAGATTCAC
AATGCGGATGTGCACTTGCGGTGTGACGCCACGGTGGACCAGATAATTGA
CGTGGTTGAGGGCAATAGGAAGAAAATCGCCGAGTTGGAAGCCGAGTACG
CCAAGACCCAAAAGAACAAGGCGACCAACTATCATCTCGGCCTTATCAAA
GCCAAGCTTGCCAAGCTCCGTCGTGAGCTGATTGAACCCACCGGCGGCGG
TGGAGGGAAAGGAGGGGATGGCTTCGACGTGGCCAAGTCAGGCGACACCC
GTGTGGGTCTGGTGGGCTTTCCATCAGTAGGGAAATCGACCCTGTTGACG
AAGCTCACGGGCACATTTTCCGAGGCGGCCTCTTATGAGTTTACTACTTT
GACGGCAATTCCAGGCACGCTGCATTACCGGGGGGCGAGGATCCAGATTG
TGGATCTACCGGGGATTATCGAGGGAGCGAAGGACGGCAAAGATGTCGAC
GATCCAAGTAATTCTCCATTCCCACCATCCCTCCGTCGAGGATTTCTGCA
ACCGCATCCATCGCACATTGATAAGTTCTTTTAAGTATGCCTGGGTTTGG
GGCTCGAGCGTGAAGCACCAACCGCAAAGGGTGGGGAAAGATCATATTCT
TGCCGATGAGGATGTTGTGCAAATCGTGAAAAAGAGTGGATAGTACATGC
CCGCCGTGTACGTGCTTAACAAAATTGACCAAATCTCGGTGGAGGAGCTG
GACATCATCAGCCGCCTCCCCCACTGTGTCCCCATCTCCGCTTCGCATGG
ATGGAACCTCGATGAGCTCATCGACCAAGTCTGGGATGAGTGTAAGATGA
TCCGGATCTACACCAAGCCCAAAGGCCAAATCCCTGACTACACCGCACCG
GCCGTGGTCGTCAAGTCATTTCCGCAGCGCGTACATGCAACATTATTCTC
GTCGTCCTCGACGTGGCTAAGCCCGCCACCCATAAAATCTTGATCGAACG
TGAGCTGGATGGATTTGGCATTCGCCTGAACCAGGAGCCTCCGCGCATCA
TGTTCCGGAAGAAGGACAAGGGCGGAATTAATTATCAAGCCTTTGTGCCT
CAGACGTCTCTCGACGCCGAGGCGGTGACGGCGATTTGCCGGGAGTACAA
GATTCACAATGCGGATGTGCACTTGCGGTGTGACGCCACGGTGGACCAGA
TAATTGACGTGGTTGAGGGCAATAGGAAGAAAATCGCCGAGTTGGAAGCC
GAGTACGCCAAGACCCAAAAGAACAAGGCGACCAACTATCATCTCGGCCT
TATCAAAGCCAAGCTTGCCAAGCTCCGTCGTGAGCTGATTGAACCCACCG
GCGGCGGTGGAGGGAAAGGAGGGGATGGCTTCGACGTGGCCAAGTCAGGC
GACACCCGTGTGGGTCTGGTGGGCTTTCCATCAGTAGGGAAATCGACCCT
GTTGACGAAGCTCACGGGCACATTTTCCGAGGCGGCCTCTTATGAGTTTA
CTACTTTGACGGCAATTCCAGGCACGCTGCATTACCGGGGGGCGAGGATC
CAGATTGTGGATCTACCGGGGATTATCGAGGGAGCGAAGGACGGCAAAGA
TGTCGACGATCCAAGTAATTCTCCATTCCCACCATCCCTCCGTCGAGGAT
TTCTGCAACCGCATCCATCGCACATTGATAAGTTCTTTTAAGTATGCCTG
GGTTTGGGGCTCGAGCGTGAAGCACCAACCGCAAAGGGTGGGGAAAGATC
ATATTCTTGCCGATGAGGATGTTGTGCAAATCGTGAAAAAGAGTGGATAG
TACATGCCCGCCGTGTACGTGCTTAACAAAATTGACCAAATCTCGGTGGA
GGAGCTGGACATCATCAGCCGCCTCCCCCACTGTGTCCCCATCTCCGCTT
CGCATGGATGGAACCTCGATGAGCTCATCGACCAAGTCTGGGATGAGTGT
AAGATGATCCGGATCTACACCAAGCCCAAAGGCCAAATCCCTGACTACAC
CGCACCGGCCGTGGTCGTCAAGTCATTTCCGCAGCGCGTACATGCAACAT
TATTCTCGTCGTCCTCGACGTGGCTAAGCCCGCCACCCATAAAATCTTGA
TCGAACGTGAGCTGGATGGATTTGGCATTCGCCTGAACCAGGAGCCTCCG
CGCATCATGTTCCGGAAGAAGGACAAGGGCGGAATTAATTATCAAGCCTT
TGTGCCTCAGACGTCTCTCGACGCCGAGGCGGTGACGGCGATTTGCCGGG
AGTACAAGATTCACAATGCGGATGTGCACTTGCGGTGTGACGCCACGGTG
GACCAGATAATTGACGTGGTTGAGGGCAATAGGAAGAAAATCGCCGAGTT
GGAAGCCGAGTACGCCAAGACCCAAAAGAACAAGGCGACCAACTATCATC
TCGGCCTTATCAAAGCCAAGCTTGCCAAGCTCCGTCGTGAGCTGATTGAA
CCCACCGGCGGCGGTGGAGGGAAAGGAGGGGATGGCTTCGACGTGGCCAA
GTCAGGCGACACCCGTGTGGGTCTGGTGGGCTTTCCATCAGTAGGGAAAT
CGACCCTGTTGACGAAGCTCACGGGCACATTTTCCGAGGCGGCCTCTTAT
GAGTTTACTACTTTGACGGCAATTCCAGGCACGCTGCATTACCGGGGGGC
GAGGATCCAGATTGTGGATCTACCGGGGATTATCGAGGGAGCGAAGGACG
GCAAAGATGTCGACGATCCAAGTAATTCTCCATTCCCACCATCCCTCCGT
CGAGGATTTCTGCAACCGCATCCATCGCACATTGATAAGTTCTTTTAAGT
ATGCCTGGGTTTGGGGCTCGAGCGTGAAGCACCAACCGCAAAGGGTGGGG
AAAGATCATATTCTTGCCGATGAGGATGTTGTGCAAATCGTGAAAAAGAG
TGGATAGTACATGCCCGCCGTGTACGTGCTTAACAAAATTGACCAAATCT
CGGTGGAGGAGCTGGACATCATCAGCCGCCTCCCCCACTGTGTCCCCATC
TCCGCTTCGCATGGATGGAACCTCGATGAGCTCATCGACCAAGTCTGGGA
TGAGTGTAAGATGATCCGGATCTACACCAAGCCCAAAGGCCAAATCCCTG
ACTACACCGCACCGGCCGTGGTCGTCAAGTCATTTCCGCAGCGCGTACAT
GCAACATTATTCTCGTCGTCCTCGACGTGGCTAAGCCCGCCACCCATAAA
ATCTTGATCGAACGTGAGCTGGATGGATTTGGCATTCGCCTGAACCAGGA
GCCTCCGCGCATCATGTTCCGGAAGAAGGACAAGGGCGGAATTAATTATC
AAGCCTTTGTGCCTCAGACGTCTCTCGACGCCGAGGCGGTGACGGCGATT
TGCCGGGAGTACAAGATTCACAATGCGGATGTGCACTTGCGGTGTGACGC
CACGGTGGACCAGATAATTGACGTGGTTGAGGGCAATAGGAAGAAAATCG
CCGAGTTGGAAGCCGAGTACGCCAAGACCCAAAAGAACAAGGCGACCAAC
TATCATCTCGGCCTTATCAAAGCCAAGCTTGCCAAGCTCCGTCGTGAGCT
GATTGAACCCACCGGCGGCGGTGGAGGGAAAGGAGGGGATGGCTTCGACG
TGGCCAAGTCAGGCGACACCCGTGTGGGTCTGGTGGGCTTTCCATCAGTA
GGGAAATCGACCCTGTTGACGAAGCTCACGGGCACATTTTCCGAGGCGGC
CTCTTATGAGTTTACTACTTTGACGGCAATTCCAGGCACGCTGCATTACC
GGGGGGCGAGGATCCAGATTGTGGATCTACCGGGGATTATCGAGGGAGCG
AAGGACGGCAAAGATGTCGACGATCCAAGTAATTCTCCATTCCCACCATC
CCTCCGTCGAGGATTTCTGCAACCGCATCCATCGCACATTGATAAGTTCT
TTTAAGTATGCCTGGGTTTGGGGCTCGAGCGTGAAGCACCAACCGCAAAG
GGTGGGGAAAGATCATATTCTTGCCGATGAGGATGTTGTGCAAATCGTGA
AAAAGAGTGGATAGTACATGCCCGCCGTGTACGTGCTTAACAAAATTGAC
CAAATCTCGGTGGAGGAGCTGGACATCATCAGCCGCCTCCCCCACTGTGT
CCCCATCTCCGCTTCGCATGGATGGAACCTCGATGAGCTCATCGACCAAG
TCTGGGATGAGTGTAAGATGATCCGGATCTACACCAAGCCCAAAGGCCAA
ATCCCTGACTACACCGCACCGGCCGTGGTCGTCAAGTCATTTCCGCAGCG
CGTACATGCAACATTATTCTCGTCGTCCTCGACGTGGCTAAGCCCGCCAC
CCATAAAATCTTGATCGAACGTGAGCTGGATGGATTTGGCATTCGCCTGA
ACCAGGAGCCTCCGCGCATCATGTTCCGGAAGAAGGACAAGGGCGGAATT
AATTATCAAGCCTTTGTGCCTCAGACGTCTCTCGACGCCGAGGCGGTGAC
GGCGATTTGCCGGGAGTACAAGATTCACAATGCGGATGTGCACTTGCGGT
GTGACGCCACGGTGGACCAGATAATTGACGTGGTTGAGGGCAATAGGAAG
AAAATCGCCGAGTTGGAAGCCGAGTACGCCAAGACCCAAAAGAACAAGGC
GACCAACTATCATCTCGGCCTTATCAAAGCCAAGCTTGCCAAGCTCCGTC
GTGAGCTGATTGAACCCACCGGCGGCGGTGGAGGGAAAGGAGGGGATGGC
TTCGACGTGGCCAAGTCAGGCGACACCCGTGTGGGTCTGGTGGGCTTTCC
ATCAGTAGGGAAATCGACCCTGTTGACGAAGCTCACGGGCACATTTTCCG
AGGCGGCCTCTTATGAGTTTACTACTTTGACGGCAATTCCAGGCACGCTG
CATTACCGGGGGGCGAGGATCCAGATTGTGGATCTACCGGGGATTATCGA
GGGAGCGAAGGACGGCAAAGATGTCGACGATCCAA back to top
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