jgi.p|Nanoce1779_2|599153, mRNA_7555 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599153
Unique NamemRNA_7555
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length415
Alignment locationscaffold_20:240378..241229 -

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Properties
Property NameValue
TranscriptId599239
TrackFilteredModels2
ProteinId599153
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:240378..241229 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599153gene_7555Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599153mRNA_7555-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7555CDS_7555Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7555 ID=mRNA_7555|Name=jgi.p|Nanoce1779_2|599153|organism=Nannochloropsis oceanica|type=mRNA|length=415bp
AGGGTTCGCCATCATGTACAAGCAGTTGGTGTGCCTAGTGGTTGGCACTT
TGGCCGTGGGCTCGCAGGCTTTCATGGCCCCCTCCCCGTTGTTCAAGGCG
AGCTCCTCTGCCGCGGCCCGCGTCTACCAGCCCATCACGACCGAGACCGG
TCTGCGCACGCCTGTGTCTGCTGATGTGGTGGTGTCTGTCGGGGATGGCG
AGAACATCGACAACGCCGTCAAGCGTTTCAAACGCGAGGTGAACAAATCC
GGGCACTTGCTGGACCTGCGATTTAAGCGTTATCACGAGAGCAACCAGGA
GAAGGTGAAGCGTAAGGCTGTCCAAGCCCGTCGCAAGGCCCGCATGCTTC
GCTTGTCTCTCCGCAAGGGGCAGAAGCTCTAAACGAGGAAGCGAGCGAGG
GCGGGAGGGAGGGAG
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protein sequence of jgi.p|Nanoce1779_2|599153

>mRNA_7555-protein ID=mRNA_7555-protein|Name=jgi.p|Nanoce1779_2|599153|organism=Nannochloropsis oceanica|type=polypeptide|length=123bp
MYKQLVCLVVGTLAVGSQAFMAPSPLFKASSSAAARVYQPITTETGLRTP
VSADVVVSVGDGENIDNAVKRFKREVNKSGHLLDLRFKRYHESNQEKVKR
KAVQARRKARMLRLSLRKGQKL*
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mRNA from alignment at scaffold_20:240378..241229-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7555 ID=mRNA_7555|Name=jgi.p|Nanoce1779_2|599153|organism=Nannochloropsis oceanica|type=mRNA|length=852bp|location=Sequence derived from alignment at scaffold_20:240378..241229- (Nannochloropsis oceanica)
AGGGTTCGCCATCATGTACAAGCAGTTGGTGTGCCTAGTGGTTGGCACTT
TGGCCGTGGGCTCGCAGGCTTTCATGGCCCCCTCCCCGTTGTTCAAGGCG
AGCTCCTCTGCCGCGGCCCGCGTCTACCAGCCCATCACGACCGAGACCGG
TACGTCTCGGTGCATGAGCATGCATGCTTTTGGATAGTATAGGGGAAGAA
TAGTAGAGAAACTGTGACATAGCGGATGGGTTGTGTGTCTGCACTAACGC
GGTCGGGTGGGATGGACAGGCGAAGAGCATAGTCTGTGTTGGGCGACACA
AGGACTGGCAATGGCTCACTTATACCATCCACCAAACAGGTCTGCGCACG
CCTGTGTCTGCTGATGTGGTGGTGTCTGTCGGGGATGGCGAGAAGTAAGT
CTGCGCACGGAGGTGTGAGGTGGTGGGGAAAGGGAAAAGATGAGGGTAGG
AGAGAGGGTTGACCACGAGTGCTGAAGAAGATGGAGGAGGAGGACTTCGA
TGAGGGAAGTGGCTCACAGATCCTAATCGATTGGCTTCTGAGTATCTTGG
GATTATGGATGCCTGTTCCTAGGTATACTAGATCCGCCAATCTTACCCCT
CCCTCCCTCCCTCTCCCTCCCTCCTGTTCTCCTCCCAACAGCATCGACAA
CGCCGTCAAGCGTTTCAAACGCGAGGTGAACAAATCCGGGCACTTGCTGG
ACCTGCGATTTAAGCGTTATCACGAGAGCAACCAGGAGAAGGTGAAGCGT
AAGGCTGTCCAAGCCCGTCGCAAGGCCCGCATGCTTCGCTTGTCTCTCCG
CAAGGGGCAGAAGCTCTAAACGAGGAAGCGAGCGAGGGCGGGAGGGAGGG
AG
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Coding sequence (CDS) from alignment at scaffold_20:240378..241229-

>mRNA_7555 ID=mRNA_7555|Name=jgi.p|Nanoce1779_2|599153|organism=Nannochloropsis oceanica|type=CDS|length=1107bp|location=Sequence derived from alignment at scaffold_20:240378..241229- (Nannochloropsis oceanica)
CATCGACAACGCCGTCAAGCGTTTCAAACGCGAGGTGAACAAATCCGGGC
ACTTGCTGGACCTGCGATTTAAGCGTTATCACGAGAGCAACCAGGAGAAG
GTGAAGCGTAAGGCTGTCCAAGCCCGTCGCAAGGCCCGCATGCTTCGCTT
GTCTCTCCGCAAGGGGCAGAAGCTCTAAGTCTGCGCACGCCTGTGTCTGC
TGATGTGGTGGTGTCTGTCGGGGATGGCGAGAAATGTACAAGCAGTTGGT
GTGCCTAGTGGTTGGCACTTTGGCCGTGGGCTCGCAGGCTTTCATGGCCC
CCTCCCCGTTGTTCAAGGCGAGCTCCTCTGCCGCGGCCCGCGTCTACCAG
CCCATCACGACCGAGACCGCATCGACAACGCCGTCAAGCGTTTCAAACGC
GAGGTGAACAAATCCGGGCACTTGCTGGACCTGCGATTTAAGCGTTATCA
CGAGAGCAACCAGGAGAAGGTGAAGCGTAAGGCTGTCCAAGCCCGTCGCA
AGGCCCGCATGCTTCGCTTGTCTCTCCGCAAGGGGCAGAAGCTCTAAGTC
TGCGCACGCCTGTGTCTGCTGATGTGGTGGTGTCTGTCGGGGATGGCGAG
AAATGTACAAGCAGTTGGTGTGCCTAGTGGTTGGCACTTTGGCCGTGGGC
TCGCAGGCTTTCATGGCCCCCTCCCCGTTGTTCAAGGCGAGCTCCTCTGC
CGCGGCCCGCGTCTACCAGCCCATCACGACCGAGACCGCATCGACAACGC
CGTCAAGCGTTTCAAACGCGAGGTGAACAAATCCGGGCACTTGCTGGACC
TGCGATTTAAGCGTTATCACGAGAGCAACCAGGAGAAGGTGAAGCGTAAG
GCTGTCCAAGCCCGTCGCAAGGCCCGCATGCTTCGCTTGTCTCTCCGCAA
GGGGCAGAAGCTCTAAGTCTGCGCACGCCTGTGTCTGCTGATGTGGTGGT
GTCTGTCGGGGATGGCGAGAAATGTACAAGCAGTTGGTGTGCCTAGTGGT
TGGCACTTTGGCCGTGGGCTCGCAGGCTTTCATGGCCCCCTCCCCGTTGT
TCAAGGCGAGCTCCTCTGCCGCGGCCCGCGTCTACCAGCCCATCACGACC
GAGACCG
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Synonyms
Publications