jgi.p|Nanoce1779_2|558656, mRNA_7554 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|558656
Unique Name	mRNA_7554
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1682
Alignment location	scaffold_20:238300..240080 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	558742
Track	FilteredModels2
ProteinId	558656

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_20	supercontig	scaffold_20:238300..240080 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|558656	gene_7554	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|558656	mRNA_7554-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7554	CDS_7554	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_20:238300..240080+
coding sequence from alignment at scaffold_20:238300..240080+

mRNA sequence

>mRNA_7554 ID=mRNA_7554|Name=jgi.p|Nanoce1779_2|558656|organism=Nannochloropsis oceanica|type=mRNA|length=1682bp
AGGGTGGCAAGGGGCCGATGTGAATAGGAGCAGAACTGCACGGGGGGGGG
AGGTATCTGATGATTAAAGCGTTTTTCCCGTCCCCAAGACGACCATTTAC
ACACACAGACAATCACCGCAGCTACAACACAAAAGCATGTACCAAGACTT
AGATACCTCTTGTGCGTCTTCGGTCTCTTCCTCCTCTACGCATCACTCCC
CCGTCTCCAGCTCCTCTTCGACCTCCCCTCCCCCCCCCCCCTTGCAAGAA
GGCGGCATCGTTATTATTCTGGGCATGCCCTCCGGGAGTGAGTTTGGAAT
CGACATGCAAATAAACCAGGTCGGCCCCAACTTTCGAGGCGTTGCGGGCG
TGCCTTTAGGCTTGCATTTCCTGACGTTCGGGACAGGCCAAGGCCTCCGC
CAAGGCTTTTTCGTTCACATTTCCCGTCCGTATGAAGTCCTCGTCAAATC
ATGGGACCCAACAGAAGAAGAATTAATTGAGCAAGGAACAGGACTACGGG
AAGGGTCTATGCATAATCTACTCCAGGCCCTGCAAAGGGGTGAATTGAAC
AAGCAATTAGGGGCATACCCTGAAAGGGAGCAGGGGAGGCTTTGGCGGGA
TCTGAGCGAGTACATAACAGAGGACGTCTTGGCACTATGTGGTTTGAAAG
TGGAAACGCGTATCTTACCAGGAGCTTGGGAAGAGGAGAAAATACATGCT
CGAGGCGAAGAAGAGAAGAGGGAAGGAGGGGAGTTGGTGCCGTTCTTTCC
AGGGTTGGGCCACGCGGCCACTTTCACGGATGTACGAGGCGCGAAACGGC
CAAAGAATGCATTGGACATGACACCGGCAGAAGTGACACGATACCACTTG
GATCGCTCTCAACTGTTGGAGGAAGTGTTGAGGGATGTGTATACCTGGAA
AGCCCTTCTAGGCGAGTATCAGCTCGCCTTCCTTCTCTTCCTTAACCTGT
ACTCCATGGCCGGCCTCAAGCACTGGAAAGAAACCACCGCCCTGCTCTGC
CACGCTTCCCTCTCTCCCTCCCTCCCTCAATACTTCCCCCTCTATCACGC
CTTCCTCCATGTCTTCTCGGCCCAGTCTTCTGCTATGCCTTCGGATTTCT
TTTTTAATGACGAAGAAGGAGAGATGGTGAAAGGCAAAGAGAGTTTCCTC
CAGCCTTGCCTGAGGCAGTTGTTACGGAATGTGAGGGAGGGAGGGAGGGA
GGGAGAAAGGGAGGGCAGCGGCTTGCTGGAAGAAGTTGAGCTGTTCGCAC
GGAAGATGGAAGCGAGGTTCCTGGGGTTTAATCTAAAGGCGAGGAGGGAG
GGAGCGAGAAAGGACGAGGTAGAGGAAGAGGAGGAGGAGGAGGATGGGCC
GTTGGTGGTGCCGTGGGAGGAGGTGGAGAGGGCGATGCTTCGGACGACGA
TGACGGAGGACTGGGAGGAGGAAGAGAGGGAGGAAATAGGGAAGAATCGG
GTTCTCGAGACGATTCAGGAACAGGAGGGGGTGGAGGATTAGGGGGGGAA
GCAGCGACCGTCTTGGTAATAAGAGGGAGAGGGGTGGCGAAGTTCACTGT
CGCTCCTGTAGCGGTAGCACGGGCAGCAGCAACAAAAACAATGACAGCAG
CATAAACATCAACAACAAGACAGAAATAGCATAAACTAATGTATATATAT
ATATAAGCTTAAAAAAGATAAAGAGAGAGAGG

protein sequence of jgi.p|Nanoce1779_2|558656

>mRNA_7554-protein ID=mRNA_7554-protein|Name=jgi.p|Nanoce1779_2|558656|organism=Nannochloropsis oceanica|type=polypeptide|length=452bp
MYQDLDTSCASSVSSSSTHHSPVSSSSSTSPPPPPLQEGGIVIILGMPSG
SEFGIDMQINQVGPNFRGVAGVPLGLHFLTFGTGQGLRQGFFVHISRPYE
VLVKSWDPTEEELIEQGTGLREGSMHNLLQALQRGELNKQLGAYPEREQG
RLWRDLSEYITEDVLALCGLKVETRILPGAWEEEKIHARGEEEKREGGEL
VPFFPGLGHAATFTDVRGAKRPKNALDMTPAEVTRYHLDRSQLLEEVLRD
VYTWKALLGEYQLAFLLFLNLYSMAGLKHWKETTALLCHASLSPSLPQYF
PLYHAFLHVFSAQSSAMPSDFFFNDEEGEMVKGKESFLQPCLRQLLRNVR
EGGREGEREGSGLLEEVELFARKMEARFLGFNLKARREGARKDEVEEEEE
EEDGPLVVPWEEVERAMLRTTMTEDWEEEEREEIGKNRVLETIQEQEGVE
D*

mRNA from alignment at scaffold_20:238300..240080+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7554 ID=mRNA_7554|Name=jgi.p|Nanoce1779_2|558656|organism=Nannochloropsis oceanica|type=mRNA|length=1781bp|location=Sequence derived from alignment at scaffold_20:238300..240080+ (Nannochloropsis oceanica)
AGGGTGGCAAGGGGCCGATGTGAATAGGAGCAGAACTGCACGGGGGGGGG
AGGTATCTGATGATTAAAGCGTTTTTCCCGTCCCCAAGACGACCATTTAC
ACACACAGACAATCACCGCAGCTACAACACAAAAGCATGTACCAAGACTT
AGATACCTCTTGTGCGTCTTCGGTCTCTTCCTCCTCTACGCATCACTCCC
CCGTCTCCAGCTCCTCTTCGACCTCCCCTCCCCCCCCCCCCTTGCAAGAA
GGCGGCATCGTTATTATTCTGGGCATGCCCTCCGGGAGTGAGTTTGGAAT
CGACATGCAAATAAACCAGGTCGGCCCCAACTTTCGAGGCGTTGCGGGCG
TGCCTTTAGGCTTGCATTTCCTGACGTTCGGGACAGGCCAAGGCCTCCGC
CAAGGCTTTTTCGTTCACATTTCCCGTCCGTATGAAGTCCTCGTCAAATC
ATGGGACCCAACAGAAGAAGAATTAATTGAGCAAGGAACAGGACTACGGG
AAGGGTCTATGCATAATCTACTCCAGGCCCTGCAAAGGGGTGAATTGAAC
AAGCAATTAGGGGCATACCCTGAAAGGGAGCAGGGGAGGCTTTGGCGGGA
TCTGAGCGAGTACATAACAGAGGACGTCTTGGCACTATGTGGTTTGAAAG
TGGAAACGCGTATCTTACCAGGAGCTTGGGAAGAGGAGAAAATACATGCT
CGAGGCGAAGAAGAGAAGAGGGAAGGAGGGGAGTTGGTGCCGTTCTTTCC
AGGGTTGGGCCACGCGGCCACTTTCACGGATGTACGAGGCGCGAAACGGC
CAAAGAATGCATTGGACATGACACCGGCAGAAGTGACACGATACCACTTG
GATCGCTCTCAACTGTTGGAGGAAGTGTTGAGGGATGTGTATAGTAAAAT
AGGCTCGTCCTCATCCTCGGCCTCCCTCCTTCCCTCGTCCTTCTCGTCCT
CCTCGTCCTCATCCTCTTCTCCTTCTTTTCCTTCTTCGTCAGCCTGGAAA
GCCCTTCTAGGCGAGTATCAGCTCGCCTTCCTTCTCTTCCTTAACCTGTA
CTCCATGGCCGGCCTCAAGCACTGGAAAGAAACCACCGCCCTGCTCTGCC
ACGCTTCCCTCTCTCCCTCCCTCCCTCAATACTTCCCCCTCTATCACGCC
TTCCTCCATGTCTTCTCGGCCCAGTCTTCTGCTATGCCTTCGGATTTCTT
TTTTAATGACGAAGAAGGAGAGATGGTGAAAGGCAAAGAGAGTTTCCTCC
AGCCTTGCCTGAGGCAGTTGTTACGGAATGTGAGGGAGGGAGGGAGGGAG
GGAGAAAGGGAGGGCAGCGGCTTGCTGGAAGAAGTTGAGCTGTTCGCACG
GAAGATGGAAGCGAGGTTCCTGGGGTTTAATCTAAAGGCGAGGAGGGAGG
GAGCGAGAAAGGACGAGGTAGAGGAAGAGGAGGAGGAGGAGGATGGGCCG
TTGGTGGTGCCGTGGGAGGAGGTGGAGAGGGCGATGCTTCGGACGACGAT
GACGGAGGACTGGGAGGAGGAAGAGAGGGAGGAAATAGGGAAGAATCGGG
TTCTCGAGACGATTCAGGAACAGGAGGGGGTGGAGGATTAGGGGGGGAAG
CAGCGACCGTCTTGGTAATAAGAGGGAGAGGGGTGGCGAAGTTCACTGTC
GCTCCTGTAGCGGTAGCACGGGCAGCAGCAACAAAAACAATGACAGCAGC
ATAAACATCAACAACAAGACAGAAATAGCATAAACTAATGTATATATATA
TATAAGCTTAAAAAAGATAAAGAGAGAGAGG

Coding sequence (CDS) from alignment at scaffold_20:238300..240080+

>mRNA_7554 ID=mRNA_7554|Name=jgi.p|Nanoce1779_2|558656|organism=Nannochloropsis oceanica|type=CDS|length=2712bp|location=Sequence derived from alignment at scaffold_20:238300..240080+ (Nannochloropsis oceanica)
ATGTACCAAGACTTAGATACCTCTTGTGCGTCTTCGGTCTCTTCCTCCTC
TACGCATCACTCCCCCGTCTCCAGCTCCTCTTCGACCTCCCCTCCCCCCC
CCCCCTTGCAAGAAGGCGGCATCGTTATTATTCTGGGCATGCCCTCCGGG
AGTGAGTTTGGAATCGACATGCAAATAAACCAGGTCGGCCCCAACTTTCG
AGGCGTTGCGGGCGTGCCTTTAGGCTTGCATTTCCTGACGTTCGGGACAG
GCCAAGGCCTCCGCCAAGGCTTTTTCGTTCACATTTCCCGTCCGTATGAA
GTCCTCGTCAAATCATGGGACCCAACAGAAGAAGAATTAATTGAGCAAGG
AACAGGACTACGGGAAGGGTCTATGCATAATCTACTCCAGGCCCTGCAAA
GGGGTGAATTGAACAAGCAATTAGGGGCATACCCTGAAAGGGAGCAGGGG
AGGCTTTGGCGGGATCTGAGCGAGTACATAACAGAGGACGTCTTGGCACT
ATGTGGTTTGAAAGTGGAAACGCGTATCTTACCAGGAGCTTGGGAAGAGG
AGAAAATACATGCTCGAGGCGAAGAAGAGAAGAGGGAAGGAGGGGAGTTG
GTGCCGTTCTTTCCAGGGTTGGGCCACGCGGCCACTTTCACGGATGTACG
AGGCGCGAAACGGCCAAAGAATGCATTGGACATGACACCGGCAGAAGTGA
CACGATACCACTTGGATCGCTCTCAACTGTTGGAGGAAGTGTTGAGGGAT
GTGTATACCTGGAAAGCCCTTCTAGGCGAGTATCAGCTCGCCTTCCTTCT
CTTCCTTAACCTGTACTCCATGGCCGGCCTCAAGCACTGGAAAGAAACCA
CCGCCCTGCTCTGCCACGCTTCCCTCTCTCCCTCCCTCCCTCAATACTTC
CCCCTCTATCACGCCTTCCTCCATGTCTTCTCGGCCCAGTCTTCTGCTAT
GCCTTCGGATTTCTTTTTTAATGACGAAGAAGGAGAGATGGTGAAAGGCA
AAGAGAGTTTCCTCCAGCCTTGCCTGAGGCAGTTGTTACGGAATGTGAGG
GAGGGAGGGAGGGAGGGAGAAAGGGAGGGCAGCGGCTTGCTGGAAGAAGT
TGAGCTGTTCGCACGGAAGATGGAAGCGAGGTTCCTGGGGTTTAATCTAA
AGGCGAGGAGGGAGGGAGCGAGAAAGGACGAGGTAGAGGAAGAGGAGGAG
GAGGAGGATGGGCCGTTGGTGGTGCCGTGGGAGGAGGTGGAGAGGGCGAT
GCTTCGGACGACGATGACGGAGGACTGGGAGGAGGAAGAGAGGGAGGAAA
TAGGGAAGAATCGGGTTCTCGAGACGATTCAGGAACAGGAGGGGGTGGAG
GATTAGATGTACCAAGACTTAGATACCTCTTGTGCGTCTTCGGTCTCTTC
CTCCTCTACGCATCACTCCCCCGTCTCCAGCTCCTCTTCGACCTCCCCTC
CCCCCCCCCCCTTGCAAGAAGGCGGCATCGTTATTATTCTGGGCATGCCC
TCCGGGAGTGAGTTTGGAATCGACATGCAAATAAACCAGGTCGGCCCCAA
CTTTCGAGGCGTTGCGGGCGTGCCTTTAGGCTTGCATTTCCTGACGTTCG
GGACAGGCCAAGGCCTCCGCCAAGGCTTTTTCGTTCACATTTCCCGTCCG
TATGAAGTCCTCGTCAAATCATGGGACCCAACAGAAGAAGAATTAATTGA
GCAAGGAACAGGACTACGGGAAGGGTCTATGCATAATCTACTCCAGGCCC
TGCAAAGGGGTGAATTGAACAAGCAATTAGGGGCATACCCTGAAAGGGAG
CAGGGGAGGCTTTGGCGGGATCTGAGCGAGTACATAACAGAGGACGTCTT
GGCACTATGTGGTTTGAAAGTGGAAACGCGTATCTTACCAGGAGCTTGGG
AAGAGGAGAAAATACATGCTCGAGGCGAAGAAGAGAAGAGGGAAGGAGGG
GAGTTGGTGCCGTTCTTTCCAGGGTTGGGCCACGCGGCCACTTTCACGGA
TGTACGAGGCGCGAAACGGCCAAAGAATGCATTGGACATGACACCGGCAG
AAGTGACACGATACCACTTGGATCGCTCTCAACTGTTGGAGGAAGTGTTG
AGGGATGTGTATACCTGGAAAGCCCTTCTAGGCGAGTATCAGCTCGCCTT
CCTTCTCTTCCTTAACCTGTACTCCATGGCCGGCCTCAAGCACTGGAAAG
AAACCACCGCCCTGCTCTGCCACGCTTCCCTCTCTCCCTCCCTCCCTCAA
TACTTCCCCCTCTATCACGCCTTCCTCCATGTCTTCTCGGCCCAGTCTTC
TGCTATGCCTTCGGATTTCTTTTTTAATGACGAAGAAGGAGAGATGGTGA
AAGGCAAAGAGAGTTTCCTCCAGCCTTGCCTGAGGCAGTTGTTACGGAAT
GTGAGGGAGGGAGGGAGGGAGGGAGAAAGGGAGGGCAGCGGCTTGCTGGA
AGAAGTTGAGCTGTTCGCACGGAAGATGGAAGCGAGGTTCCTGGGGTTTA
ATCTAAAGGCGAGGAGGGAGGGAGCGAGAAAGGACGAGGTAGAGGAAGAG
GAGGAGGAGGAGGATGGGCCGTTGGTGGTGCCGTGGGAGGAGGTGGAGAG
GGCGATGCTTCGGACGACGATGACGGAGGACTGGGAGGAGGAAGAGAGGG
AGGAAATAGGGAAGAATCGGGTTCTCGAGACGATTCAGGAACAGGAGGGG
GTGGAGGATTAG

Synonyms

Publications