jgi.p|Nanoce1779_2|599149, mRNA_7553 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599149
Unique NamemRNA_7553
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1033
Alignment locationscaffold_20:237205..238237 -

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Properties
Property NameValue
TranscriptId599235
TrackFilteredModels2
ProteinId599149
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:237205..238237 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599149gene_7553Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599149mRNA_7553-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7553CDS_7553Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7553 ID=mRNA_7553|Name=jgi.p|Nanoce1779_2|599149|organism=Nannochloropsis oceanica|type=mRNA|length=1033bp
AGTTACTGCACTTGGGCAAGGTGGGTGTCTTCAGCTGCAGGATTTTGCGC
GCTTTCGGTCAGGTTGAATGATGGAGGCCGAGGACGAAGAAGGCGATGCC
ATGATGGTCAGCAGCAGGAACAGCAGTGAAACCAGTCCACCCACAAAGAG
CTGCAGCAACAGCAGCAGTAGCAGCAACAACAAACGTCGTTCAGGGCAGG
ATTATGAAAATCCCGATTTTCTCGAGCATCTGCTGCATGTCACAGGCATC
ACGGGCACGGCCAGCAAGCGGCGGATGCTAAAACACTCTCCGTCCTCCCC
CCTCTTCCTTCGAAGCACCGACCAAAATGCTCCCGGCGTGGGCTTTTGCA
ACAATTGTACGACGAATTTCAACAATAATGTCAATGCCTTCTATTGGTCC
TTGCCGTTTCGGCCCACACCTCTCCAACCAAGCCCACCATCACCACCAAT
CTCCTCCCCCTTGCTTTTCCTTCAGTCGCCTCATTACGACGAGGTCATGA
ATACAATTATGAGCGAAGGCGGGAGAAAAGAAGTAGGGATAGGAAGAGGA
GGAGGAGGAATGGCCAGCATGGCGTTATGCGCTCTCCAACGGCAGCAGCA
GCAGGAGGAACAACAACATCAGCATTACCAGCAGCAGAAGCACCAGCATC
AGCATCAGCATCAGCATCAGCATCAGCAACTACTACTACAGCAACTACAA
AATTCTGACGGTTGAGCAGGTGCGCCGCTCCATTACCCCTTAGGAATGGA
TCTGGGTCTGTTATCTCCATTCACGTCGGTGGCAAGGAAGAGTGTAAATA
GTAGCAGCAGCAGCAGTAGCAAAAGTAGCATGATGGAGGACGAGAAGAAT
GTTCAGATGAGAGGAATAGCAGCAAGAGTACAAGATCGCTGTAGCACTTC
AAGTTCTATTTTCGTCATGAAATGTAGCGTACTGCCGTGCAGTCGCAGCA
GCAGCAGCAGCAGTAGCAGCAGCAGCTGTAATGTAAGGGTGCAAGGGCCA
GGAGGGAGGGAGGTGGTCACGTTGACAGAAGCA
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protein sequence of jgi.p|Nanoce1779_2|599149

>mRNA_7553-protein ID=mRNA_7553-protein|Name=jgi.p|Nanoce1779_2|599149|organism=Nannochloropsis oceanica|type=polypeptide|length=216bp
MMEAEDEEGDAMMVSSRNSSETSPPTKSCSNSSSSSNNKRRSGQDYENPD
FLEHLLHVTGITGTASKRRMLKHSPSSPLFLRSTDQNAPGVGFCNNCTTN
FNNNVNAFYWSLPFRPTPLQPSPPSPPISSPLLFLQSPHYDEVMNTIMSE
GGRKEVGIGRGGGGMASMALCALQRQQQQEEQQHQHYQQQKHQHQHQHQH
QHQQLLLQQLQNSDG*
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mRNA from alignment at scaffold_20:237205..238237-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7553 ID=mRNA_7553|Name=jgi.p|Nanoce1779_2|599149|organism=Nannochloropsis oceanica|type=mRNA|length=1033bp|location=Sequence derived from alignment at scaffold_20:237205..238237- (Nannochloropsis oceanica)
AGTTACTGCACTTGGGCAAGGTGGGTGTCTTCAGCTGCAGGATTTTGCGC
GCTTTCGGTCAGGTTGAATGATGGAGGCCGAGGACGAAGAAGGCGATGCC
ATGATGGTCAGCAGCAGGAACAGCAGTGAAACCAGTCCACCCACAAAGAG
CTGCAGCAACAGCAGCAGTAGCAGCAACAACAAACGTCGTTCAGGGCAGG
ATTATGAAAATCCCGATTTTCTCGAGCATCTGCTGCATGTCACAGGCATC
ACGGGCACGGCCAGCAAGCGGCGGATGCTAAAACACTCTCCGTCCTCCCC
CCTCTTCCTTCGAAGCACCGACCAAAATGCTCCCGGCGTGGGCTTTTGCA
ACAATTGTACGACGAATTTCAACAATAATGTCAATGCCTTCTATTGGTCC
TTGCCGTTTCGGCCCACACCTCTCCAACCAAGCCCACCATCACCACCAAT
CTCCTCCCCCTTGCTTTTCCTTCAGTCGCCTCATTACGACGAGGTCATGA
ATACAATTATGAGCGAAGGCGGGAGAAAAGAAGTAGGGATAGGAAGAGGA
GGAGGAGGAATGGCCAGCATGGCGTTATGCGCTCTCCAACGGCAGCAGCA
GCAGGAGGAACAACAACATCAGCATTACCAGCAGCAGAAGCACCAGCATC
AGCATCAGCATCAGCATCAGCATCAGCAACTACTACTACAGCAACTACAA
AATTCTGACGGTTGAGCAGGTGCGCCGCTCCATTACCCCTTAGGAATGGA
TCTGGGTCTGTTATCTCCATTCACGTCGGTGGCAAGGAAGAGTGTAAATA
GTAGCAGCAGCAGCAGTAGCAAAAGTAGCATGATGGAGGACGAGAAGAAT
GTTCAGATGAGAGGAATAGCAGCAAGAGTACAAGATCGCTGTAGCACTTC
AAGTTCTATTTTCGTCATGAAATGTAGCGTACTGCCGTGCAGTCGCAGCA
GCAGCAGCAGCAGTAGCAGCAGCAGCTGTAATGTAAGGGTGCAAGGGCCA
GGAGGGAGGGAGGTGGTCACGTTGACAGAAGCA
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Coding sequence (CDS) from alignment at scaffold_20:237205..238237-

>mRNA_7553 ID=mRNA_7553|Name=jgi.p|Nanoce1779_2|599149|organism=Nannochloropsis oceanica|type=CDS|length=648bp|location=Sequence derived from alignment at scaffold_20:237205..238237- (Nannochloropsis oceanica)
ATGATGGAGGCCGAGGACGAAGAAGGCGATGCCATGATGGTCAGCAGCAG
GAACAGCAGTGAAACCAGTCCACCCACAAAGAGCTGCAGCAACAGCAGCA
GTAGCAGCAACAACAAACGTCGTTCAGGGCAGGATTATGAAAATCCCGAT
TTTCTCGAGCATCTGCTGCATGTCACAGGCATCACGGGCACGGCCAGCAA
GCGGCGGATGCTAAAACACTCTCCGTCCTCCCCCCTCTTCCTTCGAAGCA
CCGACCAAAATGCTCCCGGCGTGGGCTTTTGCAACAATTGTACGACGAAT
TTCAACAATAATGTCAATGCCTTCTATTGGTCCTTGCCGTTTCGGCCCAC
ACCTCTCCAACCAAGCCCACCATCACCACCAATCTCCTCCCCCTTGCTTT
TCCTTCAGTCGCCTCATTACGACGAGGTCATGAATACAATTATGAGCGAA
GGCGGGAGAAAAGAAGTAGGGATAGGAAGAGGAGGAGGAGGAATGGCCAG
CATGGCGTTATGCGCTCTCCAACGGCAGCAGCAGCAGGAGGAACAACAAC
ATCAGCATTACCAGCAGCAGAAGCACCAGCATCAGCATCAGCATCAGCAT
CAGCATCAGCAACTACTACTACAGCAACTACAAAATTCTGACGGTTGA
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Synonyms
Publications