jgi.p|Nanoce1779_2|599144, mRNA_7551 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|599144
Unique Name	mRNA_7551
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1785
Alignment location	scaffold_20:233410..235194 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	599230
Track	FilteredModels2
ProteinId	599144

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_20	supercontig	scaffold_20:233410..235194 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599144	gene_7551	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599144	mRNA_7551-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7551	CDS_7551	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_20:233410..235194+
coding sequence from alignment at scaffold_20:233410..235194+

mRNA sequence

>mRNA_7551 ID=mRNA_7551|Name=jgi.p|Nanoce1779_2|599144|organism=Nannochloropsis oceanica|type=mRNA|length=1785bp
CCTCCTCTATTTCCTCCTCCTCCTCCCCCTCCCTATCTACAGCTACCAGC
TCTTCTCTTCTTTCTCTCCCTAATTCATCTTCAACCTCCTCTTCAACCGC
CCCCTCCCACACCTCGCACGCCTTCCTCCGCAACACTGCAATGGGCGGCG
GGGGCTCTGGTGGCTTCCTTGCTCCCTCCACTGCTGGCGCTTTTCCTCCT
TCCCTCCCTCCTCACAATCATTTTTCACAGCGTGCGCCGAACCACAATAC
CGCTGTACTCCCGTCTCATACTCACACAGCTTCCATGCTTCACCCGAATG
CTTCTTCACTTGCTGCTGCCGTAGGAAGACTCAGTAGCAACAGCCGTGGT
AGCAGCAGCTGGAAGAATGAATGCGAGGAGGAAGAGGAGGAGCATAATGA
AGGGGAAAGGGGAAATAGAGGAGGAGGAAGAAGAAGAAAAATGATAAACC
AGCAGTATCAGAATTATGCGGAGAGGAAGCGAAGGGCCCCCAAAATGGAT
TTGAGTGAATTTACATTAGAGGAACAGATGGAGTGGAAGAAGGCCAGGGC
TCGGCAATACAGTGCGATGGCGCGTCAGAGGCAGGTAGAGAAAGAGAATC
AGCTTAGGGAGAAGGTGAATACGCTGTCCATGTTCAAGGTGCTTGTCACG
GCAGCGCCTGACGCGATTTTACTGCTCTCCCCAGACGTGAGTGCCCGAAT
CCTGTTCGTGAATGACCGGTGCAATCAGCTGTTGAAGTTGCCACTGCGGG
GAGGGAAGGAGCAGCCGCTTGCTGGGAGGTGTTTGTGGGAGTGGATGGAT
GAAATGGATACGGGAGCAGTAGTCGCAGCCGTTGGGAAGTGCATGTCGAG
TAACGATAACACGATGTTTGTCCAGGTTACGATTCGCACGCCTCCCCTCC
CGCTTACTGTAGATGGGGCAGTCGAGCAGCAACAGCAGGAACATCAACAG
GAGAGGTCGACGAGGGTGGACTTGACGCTGAGGTCGAGCGAGCTTGGGTT
GGTGTTGTTCTTGAGGCCGGAGGGGAGGGAAGGGTATGGAGGTAAATAGG
TGAATGCATTTCTGAGGCACGAAGAATAGTCAACTTTGAGAATGAGTCAC
GCGAATGGGATGATCGAAAACTTAGTAGGACAGGAGGAAGACAAGAAGGG
GAGGAGGAAGAGGTGGAAGGCGAACAAGAAAAGGAGGCGGACAAGAAGAA
TATGGGGAAGAGGAGTTGGAAAAAGAATTAGAATAAGAATAAAGTTGAGG
AGAGAAAACAAAATTAAGAGCAAGGCCGGCAGAATGAATAAAGAGGTCGA
AAAGGTAAATCACTTCCATGTAAATATAAATCAACAAAGAGAGACAAAGA
TGTGAATGCTGCCATGTTTCCATGATCCCTGCCATAGGCCAGACAGCACA
CGCAGTACCCTATTGAAAATGACAATGAGAGCACGAATTCAGCTTTACCT
TCAGGGGTGTGAGAAGGCACAAGGAAGGGGAGAAATGAAGGAAACAGATC
AATGACGAGGGAGAGAGAAGGTTTTTGAGAGAAAGAGAAACAGACCAAAA
AGTACGACAGGAAAGTACGTAAGCATGCCCTGGCTACCGCAATGATGGTG
AGCAAAATAGAAAAATTAGGAAGGGGGTCTGGAAGGAATGAGGAGAAGGG
CACTCAAAGACTTGTGTGCGACGTCCATCCACTGTCTACCCTGTGGCAGC
GTCAAGAACATAATGCAACTACTTCTCCCCCTCAAAGTGAACAGAAGAGG
TAAACAAAAAATAAATAATCATCCATCACTGTAAA

protein sequence of jgi.p|Nanoce1779_2|599144

>mRNA_7551-protein ID=mRNA_7551-protein|Name=jgi.p|Nanoce1779_2|599144|organism=Nannochloropsis oceanica|type=polypeptide|length=303bp
MGGGGSGGFLAPSTAGAFPPSLPPHNHFSQRAPNHNTAVLPSHTHTASML
HPNASSLAAAVGRLSSNSRGSSSWKNECEEEEEEHNEGERGNRGGGRRRK
MINQQYQNYAERKRRAPKMDLSEFTLEEQMEWKKARARQYSAMARQRQVE
KENQLREKVNTLSMFKVLVTAAPDAILLLSPDVSARILFVNDRCNQLLKL
PLRGGKEQPLAGRCLWEWMDEMDTGAVVAAVGKCMSSNDNTMFVQVTIRT
PPLPLTVDGAVEQQQQEHQQERSTRVDLTLRSSELGLVLFLRPEGREGYG
GK*

mRNA from alignment at scaffold_20:233410..235194+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7551 ID=mRNA_7551|Name=jgi.p|Nanoce1779_2|599144|organism=Nannochloropsis oceanica|type=mRNA|length=1785bp|location=Sequence derived from alignment at scaffold_20:233410..235194+ (Nannochloropsis oceanica)
CCTCCTCTATTTCCTCCTCCTCCTCCCCCTCCCTATCTACAGCTACCAGC
TCTTCTCTTCTTTCTCTCCCTAATTCATCTTCAACCTCCTCTTCAACCGC
CCCCTCCCACACCTCGCACGCCTTCCTCCGCAACACTGCAATGGGCGGCG
GGGGCTCTGGTGGCTTCCTTGCTCCCTCCACTGCTGGCGCTTTTCCTCCT
TCCCTCCCTCCTCACAATCATTTTTCACAGCGTGCGCCGAACCACAATAC
CGCTGTACTCCCGTCTCATACTCACACAGCTTCCATGCTTCACCCGAATG
CTTCTTCACTTGCTGCTGCCGTAGGAAGACTCAGTAGCAACAGCCGTGGT
AGCAGCAGCTGGAAGAATGAATGCGAGGAGGAAGAGGAGGAGCATAATGA
AGGGGAAAGGGGAAATAGAGGAGGAGGAAGAAGAAGAAAAATGATAAACC
AGCAGTATCAGAATTATGCGGAGAGGAAGCGAAGGGCCCCCAAAATGGAT
TTGAGTGAATTTACATTAGAGGAACAGATGGAGTGGAAGAAGGCCAGGGC
TCGGCAATACAGTGCGATGGCGCGTCAGAGGCAGGTAGAGAAAGAGAATC
AGCTTAGGGAGAAGGTGAATACGCTGTCCATGTTCAAGGTGCTTGTCACG
GCAGCGCCTGACGCGATTTTACTGCTCTCCCCAGACGTGAGTGCCCGAAT
CCTGTTCGTGAATGACCGGTGCAATCAGCTGTTGAAGTTGCCACTGCGGG
GAGGGAAGGAGCAGCCGCTTGCTGGGAGGTGTTTGTGGGAGTGGATGGAT
GAAATGGATACGGGAGCAGTAGTCGCAGCCGTTGGGAAGTGCATGTCGAG
TAACGATAACACGATGTTTGTCCAGGTTACGATTCGCACGCCTCCCCTCC
CGCTTACTGTAGATGGGGCAGTCGAGCAGCAACAGCAGGAACATCAACAG
GAGAGGTCGACGAGGGTGGACTTGACGCTGAGGTCGAGCGAGCTTGGGTT
GGTGTTGTTCTTGAGGCCGGAGGGGAGGGAAGGGTATGGAGGTAAATAGG
TGAATGCATTTCTGAGGCACGAAGAATAGTCAACTTTGAGAATGAGTCAC
GCGAATGGGATGATCGAAAACTTAGTAGGACAGGAGGAAGACAAGAAGGG
GAGGAGGAAGAGGTGGAAGGCGAACAAGAAAAGGAGGCGGACAAGAAGAA
TATGGGGAAGAGGAGTTGGAAAAAGAATTAGAATAAGAATAAAGTTGAGG
AGAGAAAACAAAATTAAGAGCAAGGCCGGCAGAATGAATAAAGAGGTCGA
AAAGGTAAATCACTTCCATGTAAATATAAATCAACAAAGAGAGACAAAGA
TGTGAATGCTGCCATGTTTCCATGATCCCTGCCATAGGCCAGACAGCACA
CGCAGTACCCTATTGAAAATGACAATGAGAGCACGAATTCAGCTTTACCT
TCAGGGGTGTGAGAAGGCACAAGGAAGGGGAGAAATGAAGGAAACAGATC
AATGACGAGGGAGAGAGAAGGTTTTTGAGAGAAAGAGAAACAGACCAAAA
AGTACGACAGGAAAGTACGTAAGCATGCCCTGGCTACCGCAATGATGGTG
AGCAAAATAGAAAAATTAGGAAGGGGGTCTGGAAGGAATGAGGAGAAGGG
CACTCAAAGACTTGTGTGCGACGTCCATCCACTGTCTACCCTGTGGCAGC
GTCAAGAACATAATGCAACTACTTCTCCCCCTCAAAGTGAACAGAAGAGG
TAAACAAAAAATAAATAATCATCCATCACTGTAAA

Coding sequence (CDS) from alignment at scaffold_20:233410..235194+

>mRNA_7551 ID=mRNA_7551|Name=jgi.p|Nanoce1779_2|599144|organism=Nannochloropsis oceanica|type=CDS|length=909bp|location=Sequence derived from alignment at scaffold_20:233410..235194+ (Nannochloropsis oceanica)
ATGGGCGGCGGGGGCTCTGGTGGCTTCCTTGCTCCCTCCACTGCTGGCGC
TTTTCCTCCTTCCCTCCCTCCTCACAATCATTTTTCACAGCGTGCGCCGA
ACCACAATACCGCTGTACTCCCGTCTCATACTCACACAGCTTCCATGCTT
CACCCGAATGCTTCTTCACTTGCTGCTGCCGTAGGAAGACTCAGTAGCAA
CAGCCGTGGTAGCAGCAGCTGGAAGAATGAATGCGAGGAGGAAGAGGAGG
AGCATAATGAAGGGGAAAGGGGAAATAGAGGAGGAGGAAGAAGAAGAAAA
ATGATAAACCAGCAGTATCAGAATTATGCGGAGAGGAAGCGAAGGGCCCC
CAAAATGGATTTGAGTGAATTTACATTAGAGGAACAGATGGAGTGGAAGA
AGGCCAGGGCTCGGCAATACAGTGCGATGGCGCGTCAGAGGCAGGTAGAG
AAAGAGAATCAGCTTAGGGAGAAGGTGAATACGCTGTCCATGTTCAAGGT
GCTTGTCACGGCAGCGCCTGACGCGATTTTACTGCTCTCCCCAGACGTGA
GTGCCCGAATCCTGTTCGTGAATGACCGGTGCAATCAGCTGTTGAAGTTG
CCACTGCGGGGAGGGAAGGAGCAGCCGCTTGCTGGGAGGTGTTTGTGGGA
GTGGATGGATGAAATGGATACGGGAGCAGTAGTCGCAGCCGTTGGGAAGT
GCATGTCGAGTAACGATAACACGATGTTTGTCCAGGTTACGATTCGCACG
CCTCCCCTCCCGCTTACTGTAGATGGGGCAGTCGAGCAGCAACAGCAGGA
ACATCAACAGGAGAGGTCGACGAGGGTGGACTTGACGCTGAGGTCGAGCG
AGCTTGGGTTGGTGTTGTTCTTGAGGCCGGAGGGGAGGGAAGGGTATGGA
GGTAAATAG

Synonyms

Publications