jgi.p|Nanoce1779_2|574027, mRNA_755 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574027
Unique NamemRNA_755
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1811
Alignment locationscaffold_2:360776..362586 -

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Properties
Property NameValue
TranscriptId574113
TrackFilteredModels2
ProteinId574027
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:360776..362586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574027gene_755Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574027mRNA_755-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_755CDS_755Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_755 ID=mRNA_755|Name=jgi.p|Nanoce1779_2|574027|organism=Nannochloropsis oceanica|type=mRNA|length=1811bp
ACAGGACCGTCACTCTCCACTTGCACATCGTGCTCTCCCAAGCCAAGCAG
CCGTCCGTCCAAACTTTTGTTCCACGAAAATTGTCGTGCCGAGCTTTTCG
CCACCCTTACAAGCACTATGACCTCCACCACCGCGCCTGCCGCGGGGCCC
GCAAAGAAGAGAATATCGCAAGTCACGTTCGATGAGACGGTGCGGGAGAA
CATGGAGGAGTTTGAGTTAGAGCGGGAAGAGGCCGTGACGGATGCTGTTC
GGCAGTTCACGTCGCAAGGCGTTGACTTGGGCAACATTTGCGTGGCCTTG
CACGAATGCGACGGGCATTGGCTCAAGGAGGTCGATGCACAATTGACTTT
CTTCATAACGTGCTTAGATAATGGGGTCCAGGTAGCGTTGCCGGCATCGT
GGGACCGTGTGGGGACGGTGGTGGCTTTGCGGGCTCTGCACGCGGCTTTG
ACGAATGCGGACGCTGACAAAGCAGCGAATGCGCGGAAGCTGATGGGCTC
TAAAGGAACGGTGAATGTGGTGGCACGGTTATGGCAAGAACATCAGGAAG
AAGCTGCTGCTGACGATGATAGTGCTGTGGTCGATGCCCGCATCCTGGCA
CTGGCCGTGACGCAGGCTCTGTGTAGTGGAGGCTCTGCGGGGGAGGCAAG
CCGTGACATGTTCTGGCCGACAAGCATGCGAATGCTGTGCAATGCTGCCC
AACAAGCATATTCACAACAGGACCGAGCGTTCTATTTGCCTTTCCTTTCC
TTGGCCCGTGTGTTGTGCACCCGGGCGGAAGATAACAAGGTGCATTATGT
GCGATATGGTGGACTAGACCTATTAGTAGGCGCATTGAAAGATGATCCCT
GGGCCAGCGACCGCAATATCGTCTGCGAGACCTGCAAAGCTCTAAAGGCT
GTGACTGCAACTGATGACTTTAGGAAGGATTTCAGCGCCTCACACACCCA
TACCCGCGCTTTGGTCGGCAAGGGTGCCATCCCCCTCCTCCTTCAATCAT
GTCACCGCTTTCGCACCGATCTCGACACTTCGGCCGCCGCCCTGGCCGCC
TTGCGAAATTTGGCCAACAACGACGAGAGCGTCAATCAGATTGCCTCGGA
GGGAGGCTTAGATCTCGCGGTACGTGCCTTGGAAGCGCATTGGTTTCATC
CTCCTCTGGCCCAAACGGCCATTGGGCTGTTTCGCAACATCTCTGCCAAT
GATCGACACAAGACAAGCTTGTGCAATAACGGTGCTGCGGAATTGATGCT
CAAGGCTATGAAAAAGCACGGGGGAAAAGTGAAGATTCAAGAACATGGGC
TCGCGACGATGGGTGCAATGGCTCTGCGGAGCCCTGAAAACTGTAAGCAG
CTGGTGGGGCTGGGTGCGGTGTTGGTGATCTTGCAAGCACTACGCAACCA
TGCGGAGGCTCGTAGCGTCCAGAGGCAGGCATGCTTGGCAATCAGGAACA
TGGTAAGCCGGGAACCGGAGGTGGGGGAGGCATTTTTGGAGGGGGGAGCG
GAACCCTTGTTGAGACTTGCGGGGAGGTATCAGGAAAGCGTGGATGAGGC
ATATGCGGCGCTGCGTGACTTGAAATGTGATGTAAAGAGAGTGACCGTTG
ACCCTGTCACAGGGAAGGTTCAGGATGCAGACCAATTTGGGAGTACCAAG
AGTTGTTTCCACCCCGTGTTTGAGAGTAGTGATAATATCGAGGGGGCAGT
GGAAGCCGCTATCAGTGCGCCGTCTAACTCGTATCGATTTTAAATGTGCG
TGTGGGGGCTGAAGAGGGAAAAGTAAGGCAATGTGGGCAATTAAAATCTG
GCATGGGACCA
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protein sequence of jgi.p|Nanoce1779_2|574027

>mRNA_755-protein ID=mRNA_755-protein|Name=jgi.p|Nanoce1779_2|574027|organism=Nannochloropsis oceanica|type=polypeptide|length=542bp
MTSTTAPAAGPAKKRISQVTFDETVRENMEEFELEREEAVTDAVRQFTSQ
GVDLGNICVALHECDGHWLKEVDAQLTFFITCLDNGVQVALPASWDRVGT
VVALRALHAALTNADADKAANARKLMGSKGTVNVVARLWQEHQEEAAADD
DSAVVDARILALAVTQALCSGGSAGEASRDMFWPTSMRMLCNAAQQAYSQ
QDRAFYLPFLSLARVLCTRAEDNKVHYVRYGGLDLLVGALKDDPWASDRN
IVCETCKALKAVTATDDFRKDFSASHTHTRALVGKGAIPLLLQSCHRFRT
DLDTSAAALAALRNLANNDESVNQIASEGGLDLAVRALEAHWFHPPLAQT
AIGLFRNISANDRHKTSLCNNGAAELMLKAMKKHGGKVKIQEHGLATMGA
MALRSPENCKQLVGLGAVLVILQALRNHAEARSVQRQACLAIRNMVSREP
EVGEAFLEGGAEPLLRLAGRYQESVDEAYAALRDLKCDVKRVTVDPVTGK
VQDADQFGSTKSCFHPVFESSDNIEGAVEAAISAPSNSYRF*
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mRNA from alignment at scaffold_2:360776..362586-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_755 ID=mRNA_755|Name=jgi.p|Nanoce1779_2|574027|organism=Nannochloropsis oceanica|type=mRNA|length=1811bp|location=Sequence derived from alignment at scaffold_2:360776..362586- (Nannochloropsis oceanica)
ACAGGACCGTCACTCTCCACTTGCACATCGTGCTCTCCCAAGCCAAGCAG
CCGTCCGTCCAAACTTTTGTTCCACGAAAATTGTCGTGCCGAGCTTTTCG
CCACCCTTACAAGCACTATGACCTCCACCACCGCGCCTGCCGCGGGGCCC
GCAAAGAAGAGAATATCGCAAGTCACGTTCGATGAGACGGTGCGGGAGAA
CATGGAGGAGTTTGAGTTAGAGCGGGAAGAGGCCGTGACGGATGCTGTTC
GGCAGTTCACGTCGCAAGGCGTTGACTTGGGCAACATTTGCGTGGCCTTG
CACGAATGCGACGGGCATTGGCTCAAGGAGGTCGATGCACAATTGACTTT
CTTCATAACGTGCTTAGATAATGGGGTCCAGGTAGCGTTGCCGGCATCGT
GGGACCGTGTGGGGACGGTGGTGGCTTTGCGGGCTCTGCACGCGGCTTTG
ACGAATGCGGACGCTGACAAAGCAGCGAATGCGCGGAAGCTGATGGGCTC
TAAAGGAACGGTGAATGTGGTGGCACGGTTATGGCAAGAACATCAGGAAG
AAGCTGCTGCTGACGATGATAGTGCTGTGGTCGATGCCCGCATCCTGGCA
CTGGCCGTGACGCAGGCTCTGTGTAGTGGAGGCTCTGCGGGGGAGGCAAG
CCGTGACATGTTCTGGCCGACAAGCATGCGAATGCTGTGCAATGCTGCCC
AACAAGCATATTCACAACAGGACCGAGCGTTCTATTTGCCTTTCCTTTCC
TTGGCCCGTGTGTTGTGCACCCGGGCGGAAGATAACAAGGTGCATTATGT
GCGATATGGTGGACTAGACCTATTAGTAGGCGCATTGAAAGATGATCCCT
GGGCCAGCGACCGCAATATCGTCTGCGAGACCTGCAAAGCTCTAAAGGCT
GTGACTGCAACTGATGACTTTAGGAAGGATTTCAGCGCCTCACACACCCA
TACCCGCGCTTTGGTCGGCAAGGGTGCCATCCCCCTCCTCCTTCAATCAT
GTCACCGCTTTCGCACCGATCTCGACACTTCGGCCGCCGCCCTGGCCGCC
TTGCGAAATTTGGCCAACAACGACGAGAGCGTCAATCAGATTGCCTCGGA
GGGAGGCTTAGATCTCGCGGTACGTGCCTTGGAAGCGCATTGGTTTCATC
CTCCTCTGGCCCAAACGGCCATTGGGCTGTTTCGCAACATCTCTGCCAAT
GATCGACACAAGACAAGCTTGTGCAATAACGGTGCTGCGGAATTGATGCT
CAAGGCTATGAAAAAGCACGGGGGAAAAGTGAAGATTCAAGAACATGGGC
TCGCGACGATGGGTGCAATGGCTCTGCGGAGCCCTGAAAACTGTAAGCAG
CTGGTGGGGCTGGGTGCGGTGTTGGTGATCTTGCAAGCACTACGCAACCA
TGCGGAGGCTCGTAGCGTCCAGAGGCAGGCATGCTTGGCAATCAGGAACA
TGGTAAGCCGGGAACCGGAGGTGGGGGAGGCATTTTTGGAGGGGGGAGCG
GAACCCTTGTTGAGACTTGCGGGGAGGTATCAGGAAAGCGTGGATGAGGC
ATATGCGGCGCTGCGTGACTTGAAATGTGATGTAAAGAGAGTGACCGTTG
ACCCTGTCACAGGGAAGGTTCAGGATGCAGACCAATTTGGGAGTACCAAG
AGTTGTTTCCACCCCGTGTTTGAGAGTAGTGATAATATCGAGGGGGCAGT
GGAAGCCGCTATCAGTGCGCCGTCTAACTCGTATCGATTTTAAATGTGCG
TGTGGGGGCTGAAGAGGGAAAAGTAAGGCAATGTGGGCAATTAAAATCTG
GCATGGGACCA
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Coding sequence (CDS) from alignment at scaffold_2:360776..362586-

>mRNA_755 ID=mRNA_755|Name=jgi.p|Nanoce1779_2|574027|organism=Nannochloropsis oceanica|type=CDS|length=1626bp|location=Sequence derived from alignment at scaffold_2:360776..362586- (Nannochloropsis oceanica)
ATGACCTCCACCACCGCGCCTGCCGCGGGGCCCGCAAAGAAGAGAATATC
GCAAGTCACGTTCGATGAGACGGTGCGGGAGAACATGGAGGAGTTTGAGT
TAGAGCGGGAAGAGGCCGTGACGGATGCTGTTCGGCAGTTCACGTCGCAA
GGCGTTGACTTGGGCAACATTTGCGTGGCCTTGCACGAATGCGACGGGCA
TTGGCTCAAGGAGGTCGATGCACAATTGACTTTCTTCATAACGTGCTTAG
ATAATGGGGTCCAGGTAGCGTTGCCGGCATCGTGGGACCGTGTGGGGACG
GTGGTGGCTTTGCGGGCTCTGCACGCGGCTTTGACGAATGCGGACGCTGA
CAAAGCAGCGAATGCGCGGAAGCTGATGGGCTCTAAAGGAACGGTGAATG
TGGTGGCACGGTTATGGCAAGAACATCAGGAAGAAGCTGCTGCTGACGAT
GATAGTGCTGTGGTCGATGCCCGCATCCTGGCACTGGCCGTGACGCAGGC
TCTGTGTAGTGGAGGCTCTGCGGGGGAGGCAAGCCGTGACATGTTCTGGC
CGACAAGCATGCGAATGCTGTGCAATGCTGCCCAACAAGCATATTCACAA
CAGGACCGAGCGTTCTATTTGCCTTTCCTTTCCTTGGCCCGTGTGTTGTG
CACCCGGGCGGAAGATAACAAGGTGCATTATGTGCGATATGGTGGACTAG
ACCTATTAGTAGGCGCATTGAAAGATGATCCCTGGGCCAGCGACCGCAAT
ATCGTCTGCGAGACCTGCAAAGCTCTAAAGGCTGTGACTGCAACTGATGA
CTTTAGGAAGGATTTCAGCGCCTCACACACCCATACCCGCGCTTTGGTCG
GCAAGGGTGCCATCCCCCTCCTCCTTCAATCATGTCACCGCTTTCGCACC
GATCTCGACACTTCGGCCGCCGCCCTGGCCGCCTTGCGAAATTTGGCCAA
CAACGACGAGAGCGTCAATCAGATTGCCTCGGAGGGAGGCTTAGATCTCG
CGGTACGTGCCTTGGAAGCGCATTGGTTTCATCCTCCTCTGGCCCAAACG
GCCATTGGGCTGTTTCGCAACATCTCTGCCAATGATCGACACAAGACAAG
CTTGTGCAATAACGGTGCTGCGGAATTGATGCTCAAGGCTATGAAAAAGC
ACGGGGGAAAAGTGAAGATTCAAGAACATGGGCTCGCGACGATGGGTGCA
ATGGCTCTGCGGAGCCCTGAAAACTGTAAGCAGCTGGTGGGGCTGGGTGC
GGTGTTGGTGATCTTGCAAGCACTACGCAACCATGCGGAGGCTCGTAGCG
TCCAGAGGCAGGCATGCTTGGCAATCAGGAACATGGTAAGCCGGGAACCG
GAGGTGGGGGAGGCATTTTTGGAGGGGGGAGCGGAACCCTTGTTGAGACT
TGCGGGGAGGTATCAGGAAAGCGTGGATGAGGCATATGCGGCGCTGCGTG
ACTTGAAATGTGATGTAAAGAGAGTGACCGTTGACCCTGTCACAGGGAAG
GTTCAGGATGCAGACCAATTTGGGAGTACCAAGAGTTGTTTCCACCCCGT
GTTTGAGAGTAGTGATAATATCGAGGGGGCAGTGGAAGCCGCTATCAGTG
CGCCGTCTAACTCGTATCGATTTTAA
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Synonyms
Publications