jgi.p|Nanoce1779_2|599134, mRNA_7548 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599134
Unique NamemRNA_7548
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1147
Alignment locationscaffold_20:228161..229307 -

Link to JBrowse

Properties
Property NameValue
TranscriptId599220
TrackFilteredModels2
ProteinId599134
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:228161..229307 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599134gene_7548Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599134mRNA_7548-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7548CDS_7548Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7548 ID=mRNA_7548|Name=jgi.p|Nanoce1779_2|599134|organism=Nannochloropsis oceanica|type=mRNA|length=1147bp
GTCTTTATGCCGGTGACAAGGCTCGTTATGGTGATTAAAACAACAAAAAA
GTAAAAAGAGCAAAAAACTTAAATAACTTTCTGTATAGTCCGTACGGTTT
ATGTTATTTTTTTGGTGTTTTGTACTGCCTTGGATCTACGCCGGAGGACG
AACCTCTCAGTGGGAGGTGAGAATCAAAGCTTCAAAAAAAGAAAGATGGA
GTGGAGAAATCGCCTCGACTGTACGTCATTCTAAGTGTGTACTTCATTTT
TTCGTCATATATTTGTTATATTGTGGGCAAGAAAGAGTCCACGGCTGTGA
GGCTTTCCTTCTTCTAAGTCTCCAAGAGCACATCCCTCGCATACACCGGG
CAAGTTTTGTGCGAAAAAAGCCTGAATAAGTTACTATTGCAATCAGTTGA
CAATAATTGTCCGTAGCTGTGATTCATTTTTGTTATGTTTGATGAGGGCA
CAGCTACGGAGTAAAAAGTTCTGCCATGAAACATTTTCGAAAGCTTGTTC
AGGGCGGGATGGGGTCATCCTTTCGCAAAAACGCCATTTGCGCAAGCCTG
ATGCCGATATATACCGTGTGACTCGTGAAGGGCTTATTTCTTTGCTCATA
ATGCGAACTTCGTTGTCACCATGCTGGTACAAAACACATTGTGGCGATCG
AAACAAAATTATTTTATAAAACTTTCTAGTTGTGCTTGATGTGGACCCGG
ACCGACCAGGACAATTGTTGCGATAACATAACAACTCAAAGTTATGGCAA
CAACTAAGACAGCTAAAGTATCTTGGCGGATGCTTGATAAGGCTGCGTGT
CTTTCAACAGAGTGGGAACTCCTAAATTTCGACAACATCCACATACCCGT
GGTCACAGCCATTCCGTGTCCGCATCTTGTGGGATCGTCGGAAAAGGATT
GTTTCGTCCACATCTTTAAAAGCGGTCATTCGTACAACATCGGGCAAGCC
GTGGTGTCACTTGCTCAAGGCACCAAGTGGCATTCCATTCAGTACGGATC
ACTCGCTGTGCGGTCATCTTCTGACTTCGAGTATGTGATTACCTCCTCCG
TCCACATGTGCATAGGATGCCAGGAGCCCCGTTGCCACGACACAATGAAA
GTGTACCTCCTTCTTCGGACCAACTCCTCGAGTGTGCCAAATCTGAT
back to top

protein sequence of jgi.p|Nanoce1779_2|599134

>mRNA_7548-protein ID=mRNA_7548-protein|Name=jgi.p|Nanoce1779_2|599134|organism=Nannochloropsis oceanica|type=polypeptide|length=91bp
MLFFWCFVLPWIYAGGRTSQWEVRIKASKKERWSGEIASTVRHSKCVLHF
FVIYLLYCGQERVHGCEAFLLLSLQEHIPRIHRASFVRKKP
back to top

mRNA from alignment at scaffold_20:228161..229307-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7548 ID=mRNA_7548|Name=jgi.p|Nanoce1779_2|599134|organism=Nannochloropsis oceanica|type=mRNA|length=1147bp|location=Sequence derived from alignment at scaffold_20:228161..229307- (Nannochloropsis oceanica)
GTCTTTATGCCGGTGACAAGGCTCGTTATGGTGATTAAAACAACAAAAAA
GTAAAAAGAGCAAAAAACTTAAATAACTTTCTGTATAGTCCGTACGGTTT
ATGTTATTTTTTTGGTGTTTTGTACTGCCTTGGATCTACGCCGGAGGACG
AACCTCTCAGTGGGAGGTGAGAATCAAAGCTTCAAAAAAAGAAAGATGGA
GTGGAGAAATCGCCTCGACTGTACGTCATTCTAAGTGTGTACTTCATTTT
TTCGTCATATATTTGTTATATTGTGGGCAAGAAAGAGTCCACGGCTGTGA
GGCTTTCCTTCTTCTAAGTCTCCAAGAGCACATCCCTCGCATACACCGGG
CAAGTTTTGTGCGAAAAAAGCCTGAATAAGTTACTATTGCAATCAGTTGA
CAATAATTGTCCGTAGCTGTGATTCATTTTTGTTATGTTTGATGAGGGCA
CAGCTACGGAGTAAAAAGTTCTGCCATGAAACATTTTCGAAAGCTTGTTC
AGGGCGGGATGGGGTCATCCTTTCGCAAAAACGCCATTTGCGCAAGCCTG
ATGCCGATATATACCGTGTGACTCGTGAAGGGCTTATTTCTTTGCTCATA
ATGCGAACTTCGTTGTCACCATGCTGGTACAAAACACATTGTGGCGATCG
AAACAAAATTATTTTATAAAACTTTCTAGTTGTGCTTGATGTGGACCCGG
ACCGACCAGGACAATTGTTGCGATAACATAACAACTCAAAGTTATGGCAA
CAACTAAGACAGCTAAAGTATCTTGGCGGATGCTTGATAAGGCTGCGTGT
CTTTCAACAGAGTGGGAACTCCTAAATTTCGACAACATCCACATACCCGT
GGTCACAGCCATTCCGTGTCCGCATCTTGTGGGATCGTCGGAAAAGGATT
GTTTCGTCCACATCTTTAAAAGCGGTCATTCGTACAACATCGGGCAAGCC
GTGGTGTCACTTGCTCAAGGCACCAAGTGGCATTCCATTCAGTACGGATC
ACTCGCTGTGCGGTCATCTTCTGACTTCGAGTATGTGATTACCTCCTCCG
TCCACATGTGCATAGGATGCCAGGAGCCCCGTTGCCACGACACAATGAAA
GTGTACCTCCTTCTTCGGACCAACTCCTCGAGTGTGCCAAATCTGAT
back to top

Coding sequence (CDS) from alignment at scaffold_20:228161..229307-

>mRNA_7548 ID=mRNA_7548|Name=jgi.p|Nanoce1779_2|599134|organism=Nannochloropsis oceanica|type=CDS|length=275bp|location=Sequence derived from alignment at scaffold_20:228161..229307- (Nannochloropsis oceanica)
ATGTTATTTTTTTGGTGTTTTGTACTGCCTTGGATCTACGCCGGAGGACG
AACCTCTCAGTGGGAGGTGAGAATCAAAGCTTCAAAAAAAGAAAGATGGA
GTGGAGAAATCGCCTCGACTGTACGTCATTCTAAGTGTGTACTTCATTTT
TTCGTCATATATTTGTTATATTGTGGGCAAGAAAGAGTCCACGGCTGTGA
GGCTTTCCTTCTTCTAAGTCTCCAAGAGCACATCCCTCGCATACACCGGG
CAAGTTTTGTGCGAAAAAAGCCTGA
back to top
Synonyms
Publications