jgi.p|Nanoce1779_2|159248, mRNA_7545 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|159248
Unique Name	mRNA_7545
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1911
Alignment location	scaffold_20:222023..223933 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	159334
Track	FilteredModels2
ProteinId	159248

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_20	supercontig	scaffold_20:222023..223933 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|159248	gene_7545	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|159248	mRNA_7545-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7545	CDS_7545	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_20:222023..223933-
coding sequence from alignment at scaffold_20:222023..223933-

mRNA sequence

>mRNA_7545 ID=mRNA_7545|Name=jgi.p|Nanoce1779_2|159248|organism=Nannochloropsis oceanica|type=mRNA|length=1911bp
CACCCTTCCAGCAGCCTGTAGCCAATATCAGCAAATCCACGGCCTCTACT
GCCTGTGGCGTTGCGCCGAGGCAAAGGAACCAAGGCCGCGCGTGTTTGTC
GTTTGATCACTCTGCCAACTATGACACGCAAGGTGATGGTTGGCAAGTCT
CTTCGTGCCTGCTGCACGACATCACACCGACTGAAAATTTGGCAAGACTC
GACGCGTCCAACTTGTCATTAACTATCCCAGGCAACATTCCATCCTCTTC
CATTCATTCTTTAAAAAGCGGGGTTGGTGGCACATCTGATCGCGAAGTTT
CGCTTGAGTCTAACGTCAGCTCGCCGCCGCAGGACGAGGCACAGGTCAGG
GAAGCTGCTTGTGGCATGCGCTTGGTAGACGATGTCCGAGTCCTGGAGGG
TGGACCTTTGAAAGATCACATCGTCGTTCTCTTGCCTAAGGCTGTGGGCA
AGATTCATCACTTGCTTCGCCCATTGCGCAGCCAGTTCTTGCAAGGGACA
GCCTACTCCAAGGGCGTGGTAATTCTCGCGGACGGCAATCTGCAGCACCT
CGAGCGGCAATTTCAAGACCTACAGGTGTGCCCCAGCTCATTCCGTACGT
GCGAAACCCCGGACACGATGCTTTTGGACCTGTTTATCGTCGAAGGCCAA
CCAGACAAGGTCAGTGATCTCCGCCGGGCGGGCATCGAGACAGCCTATAC
GTGCATTCTGCTGGCTGACCGCTCGAGCGTGCAGGTGATCGACGAGGAGG
CCGTTGACGAATTCGTAATTCATCAATTTGTCACCATTGAGAAGCTTCGC
TCGCGGATGGAAAATGCGGCACGGCGGCCTCTCAATTACGTCGTCGAGGT
CCTGTCCTGGCCAACCCTCAAGATTTTGGATCAGACATACAAAACATTTA
AGGGCAAGGCCAAGAAGCACCGCCGACATCGCACTCAGGGTCATTTTAGT
GAATTACGCGACCGACTTAGCATGCTCCGAGGAGGGTCCCCATTTCGTCA
ATCTGTGCAGCGGTCCGTGGGACGCGGACTTCCTCCAATTGACGGATCGC
CGCTTTCGGCCACCAGTTCTCAAACACCGCTACAGCCGCAAAGCAGCCAG
TTGCAGCCACATCACCTGTCTCCGCAGCGGCAGTCGAAAACCCTTGAGCA
TCTTCAGTCGTCCTTGGACTGGGAGACGCGCGTTGGCACCACTGATGGCC
AGACAGCGGTAGAGTTCGGTGTGAGTCATGCGACTATGTACCCGTTTGTA
ACGGCGGGAACCTCATTTTTGATCGACGTGTTTGATATTATCTCTTGTCA
ACTCTTCTATAATTCGGATCTCATCCGGTTTGTGGACTTGCTGCTGACGC
TGGACTCGTCTACGGGCCCCAGCGGTTACAACGAAGGGATCAAGATGGTG
CACGCAGGGAGCCACGACAACAGCGATGAATATGGCTTTGATAACGACGA
CAACAACCGCTTTGCCGTCTCGGGGCGCTTGGGTCGCATTCCCATGCCAT
CTGACTTAATAGGACAAACTTATGGGGAATTGTACGAAGCCTTGATGGTT
GACTTTGAGGCCATGCCTATCGCGCTCTACCGCCACGATCACCGGTCGGA
CGTGTCATACATTTTTACGGGCCCACCTCTCCATACATTGCTGCGAGCAA
TGGACTGTGTATTCTTCTTGGCGCCGGTCGAGACGATGAAGTCGATTTTG
CTCAAATATGGTCCCCGGTAATGGTAGGGAGTGAGAGGGAGTGAGATTGA
GTAACGTGGGAATGGCACACACAATCGAGAAAAGTATGCGCAAGAGCGGG
TGTGAAATAGAAACATGTCGAAGCACTGATGGCGATCTGTATGTATACAC
CGATGACAGCCTGAGTAATCGAATTTTGATAGAAAGAAACGAGCTCTGAC
AATAAAAAGGA

protein sequence of jgi.p|Nanoce1779_2|159248

>mRNA_7545-protein ID=mRNA_7545-protein|Name=jgi.p|Nanoce1779_2|159248|organism=Nannochloropsis oceanica|type=polypeptide|length=452bp
MRLVDDVRVLEGGPLKDHIVVLLPKAVGKIHHLLRPLRSQFLQGTAYSKG
VVILADGNLQHLERQFQDLQVCPSSFRTCETPDTMLLDLFIVEGQPDKVS
DLRRAGIETAYTCILLADRSSVQVIDEEAVDEFVIHQFVTIEKLRSRMEN
AARRPLNYVVEVLSWPTLKILDQTYKTFKGKAKKHRRHRTQGHFSELRDR
LSMLRGGSPFRQSVQRSVGRGLPPIDGSPLSATSSQTPLQPQSSQLQPHH
LSPQRQSKTLEHLQSSLDWETRVGTTDGQTAVEFGVSHATMYPFVTAGTS
FLIDVFDIISCQLFYNSDLIRFVDLLLTLDSSTGPSGYNEGIKMVHAGSH
DNSDEYGFDNDDNNRFAVSGRLGRIPMPSDLIGQTYGELYEALMVDFEAM
PIALYRHDHRSDVSYIFTGPPLHTLLRAMDCVFFLAPVETMKSILLKYGP
R*

mRNA from alignment at scaffold_20:222023..223933-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7545 ID=mRNA_7545|Name=jgi.p|Nanoce1779_2|159248|organism=Nannochloropsis oceanica|type=mRNA|length=1911bp|location=Sequence derived from alignment at scaffold_20:222023..223933- (Nannochloropsis oceanica)
CACCCTTCCAGCAGCCTGTAGCCAATATCAGCAAATCCACGGCCTCTACT
GCCTGTGGCGTTGCGCCGAGGCAAAGGAACCAAGGCCGCGCGTGTTTGTC
GTTTGATCACTCTGCCAACTATGACACGCAAGGTGATGGTTGGCAAGTCT
CTTCGTGCCTGCTGCACGACATCACACCGACTGAAAATTTGGCAAGACTC
GACGCGTCCAACTTGTCATTAACTATCCCAGGCAACATTCCATCCTCTTC
CATTCATTCTTTAAAAAGCGGGGTTGGTGGCACATCTGATCGCGAAGTTT
CGCTTGAGTCTAACGTCAGCTCGCCGCCGCAGGACGAGGCACAGGTCAGG
GAAGCTGCTTGTGGCATGCGCTTGGTAGACGATGTCCGAGTCCTGGAGGG
TGGACCTTTGAAAGATCACATCGTCGTTCTCTTGCCTAAGGCTGTGGGCA
AGATTCATCACTTGCTTCGCCCATTGCGCAGCCAGTTCTTGCAAGGGACA
GCCTACTCCAAGGGCGTGGTAATTCTCGCGGACGGCAATCTGCAGCACCT
CGAGCGGCAATTTCAAGACCTACAGGTGTGCCCCAGCTCATTCCGTACGT
GCGAAACCCCGGACACGATGCTTTTGGACCTGTTTATCGTCGAAGGCCAA
CCAGACAAGGTCAGTGATCTCCGCCGGGCGGGCATCGAGACAGCCTATAC
GTGCATTCTGCTGGCTGACCGCTCGAGCGTGCAGGTGATCGACGAGGAGG
CCGTTGACGAATTCGTAATTCATCAATTTGTCACCATTGAGAAGCTTCGC
TCGCGGATGGAAAATGCGGCACGGCGGCCTCTCAATTACGTCGTCGAGGT
CCTGTCCTGGCCAACCCTCAAGATTTTGGATCAGACATACAAAACATTTA
AGGGCAAGGCCAAGAAGCACCGCCGACATCGCACTCAGGGTCATTTTAGT
GAATTACGCGACCGACTTAGCATGCTCCGAGGAGGGTCCCCATTTCGTCA
ATCTGTGCAGCGGTCCGTGGGACGCGGACTTCCTCCAATTGACGGATCGC
CGCTTTCGGCCACCAGTTCTCAAACACCGCTACAGCCGCAAAGCAGCCAG
TTGCAGCCACATCACCTGTCTCCGCAGCGGCAGTCGAAAACCCTTGAGCA
TCTTCAGTCGTCCTTGGACTGGGAGACGCGCGTTGGCACCACTGATGGCC
AGACAGCGGTAGAGTTCGGTGTGAGTCATGCGACTATGTACCCGTTTGTA
ACGGCGGGAACCTCATTTTTGATCGACGTGTTTGATATTATCTCTTGTCA
ACTCTTCTATAATTCGGATCTCATCCGGTTTGTGGACTTGCTGCTGACGC
TGGACTCGTCTACGGGCCCCAGCGGTTACAACGAAGGGATCAAGATGGTG
CACGCAGGGAGCCACGACAACAGCGATGAATATGGCTTTGATAACGACGA
CAACAACCGCTTTGCCGTCTCGGGGCGCTTGGGTCGCATTCCCATGCCAT
CTGACTTAATAGGACAAACTTATGGGGAATTGTACGAAGCCTTGATGGTT
GACTTTGAGGCCATGCCTATCGCGCTCTACCGCCACGATCACCGGTCGGA
CGTGTCATACATTTTTACGGGCCCACCTCTCCATACATTGCTGCGAGCAA
TGGACTGTGTATTCTTCTTGGCGCCGGTCGAGACGATGAAGTCGATTTTG
CTCAAATATGGTCCCCGGTAATGGTAGGGAGTGAGAGGGAGTGAGATTGA
GTAACGTGGGAATGGCACACACAATCGAGAAAAGTATGCGCAAGAGCGGG
TGTGAAATAGAAACATGTCGAAGCACTGATGGCGATCTGTATGTATACAC
CGATGACAGCCTGAGTAATCGAATTTTGATAGAAAGAAACGAGCTCTGAC
AATAAAAAGGA

Coding sequence (CDS) from alignment at scaffold_20:222023..223933-

>mRNA_7545 ID=mRNA_7545|Name=jgi.p|Nanoce1779_2|159248|organism=Nannochloropsis oceanica|type=CDS|length=1356bp|location=Sequence derived from alignment at scaffold_20:222023..223933- (Nannochloropsis oceanica)
ATGCGCTTGGTAGACGATGTCCGAGTCCTGGAGGGTGGACCTTTGAAAGA
TCACATCGTCGTTCTCTTGCCTAAGGCTGTGGGCAAGATTCATCACTTGC
TTCGCCCATTGCGCAGCCAGTTCTTGCAAGGGACAGCCTACTCCAAGGGC
GTGGTAATTCTCGCGGACGGCAATCTGCAGCACCTCGAGCGGCAATTTCA
AGACCTACAGGTGTGCCCCAGCTCATTCCGTACGTGCGAAACCCCGGACA
CGATGCTTTTGGACCTGTTTATCGTCGAAGGCCAACCAGACAAGGTCAGT
GATCTCCGCCGGGCGGGCATCGAGACAGCCTATACGTGCATTCTGCTGGC
TGACCGCTCGAGCGTGCAGGTGATCGACGAGGAGGCCGTTGACGAATTCG
TAATTCATCAATTTGTCACCATTGAGAAGCTTCGCTCGCGGATGGAAAAT
GCGGCACGGCGGCCTCTCAATTACGTCGTCGAGGTCCTGTCCTGGCCAAC
CCTCAAGATTTTGGATCAGACATACAAAACATTTAAGGGCAAGGCCAAGA
AGCACCGCCGACATCGCACTCAGGGTCATTTTAGTGAATTACGCGACCGA
CTTAGCATGCTCCGAGGAGGGTCCCCATTTCGTCAATCTGTGCAGCGGTC
CGTGGGACGCGGACTTCCTCCAATTGACGGATCGCCGCTTTCGGCCACCA
GTTCTCAAACACCGCTACAGCCGCAAAGCAGCCAGTTGCAGCCACATCAC
CTGTCTCCGCAGCGGCAGTCGAAAACCCTTGAGCATCTTCAGTCGTCCTT
GGACTGGGAGACGCGCGTTGGCACCACTGATGGCCAGACAGCGGTAGAGT
TCGGTGTGAGTCATGCGACTATGTACCCGTTTGTAACGGCGGGAACCTCA
TTTTTGATCGACGTGTTTGATATTATCTCTTGTCAACTCTTCTATAATTC
GGATCTCATCCGGTTTGTGGACTTGCTGCTGACGCTGGACTCGTCTACGG
GCCCCAGCGGTTACAACGAAGGGATCAAGATGGTGCACGCAGGGAGCCAC
GACAACAGCGATGAATATGGCTTTGATAACGACGACAACAACCGCTTTGC
CGTCTCGGGGCGCTTGGGTCGCATTCCCATGCCATCTGACTTAATAGGAC
AAACTTATGGGGAATTGTACGAAGCCTTGATGGTTGACTTTGAGGCCATG
CCTATCGCGCTCTACCGCCACGATCACCGGTCGGACGTGTCATACATTTT
TACGGGCCCACCTCTCCATACATTGCTGCGAGCAATGGACTGTGTATTCT
TCTTGGCGCCGGTCGAGACGATGAAGTCGATTTTGCTCAAATATGGTCCC
CGGTAA

Synonyms

Publications