jgi.p|Nanoce1779_2|599115, mRNA_7544 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599115
Unique NamemRNA_7544
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1279
Alignment locationscaffold_20:220739..222017 +

Link to JBrowse

Properties
Property NameValue
TranscriptId599201
TrackFilteredModels2
ProteinId599115
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:220739..222017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599115gene_7544Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599115mRNA_7544-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7544CDS_7544Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7544 ID=mRNA_7544|Name=jgi.p|Nanoce1779_2|599115|organism=Nannochloropsis oceanica|type=mRNA|length=1279bp
GACGACCCTCTCTTGGTGGCGCTGAAGGAGGAGCTTGCGCGGCACGACCT
GAATCTTCCCACCGGGGGCGGGCTCCCCCTAGCAGAAGGCACCATCCGCT
TGTCAAGCACGCTGGCTCCGAGCTATGACCGCAACGGAACGGACGCGGTT
CCTGCCGGCTGTCTCACACAGCTGAGTAAGACGTGCTTCGGGCAGTGTCT
TGCGCAGCTGAAGATCAATCAACTTAGTTTTTTGTTGAACATCTCCTCTG
TCGTCGCCCCCATCCCAATGTCGCCATCCGTCCCTGTTCGTTCGAACACA
AAGAAACGTTGTGACTGCCCCCGTGGTCTAGGCGTCTACCTTGCCGCAAA
TAACTCGGCTATCTGGACCTTCCCAGGAACGACACCTCCACGAACCTTCA
ATGTCACAATGGGATCCAATAGCATGTTGGTAGTGCGTCATTTGAAGTCA
AAAGGAGAGCGATTCAACTGCTCCTACACCTTCGAGGTAGCCTCGGGGGT
CGTCATGGGCTTGCGCGCGAAGGACGACCAATACCAAAATGATGGGGGTG
GGTCGATTTTCCCTGTGTGGGCCACAATACTTGTCACTATTGCAGGCGTT
TTGTGCCTCAGTGGAATCGCCTTCATCATCATCCGCCGTGGGGCAGCACG
ACAAAGCGCTACAGCAGCTTGCTCGAGCAAGAAATACCATAACCACTCGC
AGCAACACACTCGACAGAGCTATGGAAAGTGGGAAAAGGCGAAGAAGGTG
CGAATCGCGGGGAAAACATCGTTGAGGGATCCGTTGCTGGAGTTGGGCGA
CGAGGAGGATGGGATATGTAGTACGCCTTGATCAGACTCGACGGAGGGGA
GGCGCTGAAAGGGTATAAATGTGAGAGTGAGGGAGAGGATGAAGAGGGGA
AGCAGGAGCGGCAACGGTGAAATGGCACAAATCGAGAGCAAGGGTAACTA
TAAGTTAGACAAAGACAAGGGAAGTAAAGAAGGGGAGACAAGCGCATAAG
AGTACATAAGAAACTGACTCATACGAAAATTACAAGATTGAAGAGGAGGG
TTTAAAGATATCTGATATCCGGGCGCTAGCAAGGCAAGCGAAAGATATTT
GTCGTTATTCTTGCAGGTCGGTGGGTTTGATTGAGAGAGAAAATTGTGTG
TGTGTGGTGTGTGTTTATATATACGTGTGTATGTATGTGGAGTCAGAGGT
TTGGGTATGTACAATTTTACATACGATCAAAACCAAGCACTGGTGATCAA
AAGAAGAAGAAAACACCAGAGACGAGGAG
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protein sequence of jgi.p|Nanoce1779_2|599115

>mRNA_7544-protein ID=mRNA_7544-protein|Name=jgi.p|Nanoce1779_2|599115|organism=Nannochloropsis oceanica|type=polypeptide|length=188bp
MSPSVPVRSNTKKRCDCPRGLGVYLAANNSAIWTFPGTTPPRTFNVTMGS
NSMLVVRHLKSKGERFNCSYTFEVASGVVMGLRAKDDQYQNDGGGSIFPV
WATILVTIAGVLCLSGIAFIIIRRGAARQSATAACSSKKYHNHSQQHTRQ
SYGKWEKAKKVRIAGKTSLRDPLLELGDEEDGICSTP*
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mRNA from alignment at scaffold_20:220739..222017+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7544 ID=mRNA_7544|Name=jgi.p|Nanoce1779_2|599115|organism=Nannochloropsis oceanica|type=mRNA|length=1279bp|location=Sequence derived from alignment at scaffold_20:220739..222017+ (Nannochloropsis oceanica)
GACGACCCTCTCTTGGTGGCGCTGAAGGAGGAGCTTGCGCGGCACGACCT
GAATCTTCCCACCGGGGGCGGGCTCCCCCTAGCAGAAGGCACCATCCGCT
TGTCAAGCACGCTGGCTCCGAGCTATGACCGCAACGGAACGGACGCGGTT
CCTGCCGGCTGTCTCACACAGCTGAGTAAGACGTGCTTCGGGCAGTGTCT
TGCGCAGCTGAAGATCAATCAACTTAGTTTTTTGTTGAACATCTCCTCTG
TCGTCGCCCCCATCCCAATGTCGCCATCCGTCCCTGTTCGTTCGAACACA
AAGAAACGTTGTGACTGCCCCCGTGGTCTAGGCGTCTACCTTGCCGCAAA
TAACTCGGCTATCTGGACCTTCCCAGGAACGACACCTCCACGAACCTTCA
ATGTCACAATGGGATCCAATAGCATGTTGGTAGTGCGTCATTTGAAGTCA
AAAGGAGAGCGATTCAACTGCTCCTACACCTTCGAGGTAGCCTCGGGGGT
CGTCATGGGCTTGCGCGCGAAGGACGACCAATACCAAAATGATGGGGGTG
GGTCGATTTTCCCTGTGTGGGCCACAATACTTGTCACTATTGCAGGCGTT
TTGTGCCTCAGTGGAATCGCCTTCATCATCATCCGCCGTGGGGCAGCACG
ACAAAGCGCTACAGCAGCTTGCTCGAGCAAGAAATACCATAACCACTCGC
AGCAACACACTCGACAGAGCTATGGAAAGTGGGAAAAGGCGAAGAAGGTG
CGAATCGCGGGGAAAACATCGTTGAGGGATCCGTTGCTGGAGTTGGGCGA
CGAGGAGGATGGGATATGTAGTACGCCTTGATCAGACTCGACGGAGGGGA
GGCGCTGAAAGGGTATAAATGTGAGAGTGAGGGAGAGGATGAAGAGGGGA
AGCAGGAGCGGCAACGGTGAAATGGCACAAATCGAGAGCAAGGGTAACTA
TAAGTTAGACAAAGACAAGGGAAGTAAAGAAGGGGAGACAAGCGCATAAG
AGTACATAAGAAACTGACTCATACGAAAATTACAAGATTGAAGAGGAGGG
TTTAAAGATATCTGATATCCGGGCGCTAGCAAGGCAAGCGAAAGATATTT
GTCGTTATTCTTGCAGGTCGGTGGGTTTGATTGAGAGAGAAAATTGTGTG
TGTGTGGTGTGTGTTTATATATACGTGTGTATGTATGTGGAGTCAGAGGT
TTGGGTATGTACAATTTTACATACGATCAAAACCAAGCACTGGTGATCAA
AAGAAGAAGAAAACACCAGAGACGAGGAG
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Coding sequence (CDS) from alignment at scaffold_20:220739..222017+

>mRNA_7544 ID=mRNA_7544|Name=jgi.p|Nanoce1779_2|599115|organism=Nannochloropsis oceanica|type=CDS|length=564bp|location=Sequence derived from alignment at scaffold_20:220739..222017+ (Nannochloropsis oceanica)
ATGTCGCCATCCGTCCCTGTTCGTTCGAACACAAAGAAACGTTGTGACTG
CCCCCGTGGTCTAGGCGTCTACCTTGCCGCAAATAACTCGGCTATCTGGA
CCTTCCCAGGAACGACACCTCCACGAACCTTCAATGTCACAATGGGATCC
AATAGCATGTTGGTAGTGCGTCATTTGAAGTCAAAAGGAGAGCGATTCAA
CTGCTCCTACACCTTCGAGGTAGCCTCGGGGGTCGTCATGGGCTTGCGCG
CGAAGGACGACCAATACCAAAATGATGGGGGTGGGTCGATTTTCCCTGTG
TGGGCCACAATACTTGTCACTATTGCAGGCGTTTTGTGCCTCAGTGGAAT
CGCCTTCATCATCATCCGCCGTGGGGCAGCACGACAAAGCGCTACAGCAG
CTTGCTCGAGCAAGAAATACCATAACCACTCGCAGCAACACACTCGACAG
AGCTATGGAAAGTGGGAAAAGGCGAAGAAGGTGCGAATCGCGGGGAAAAC
ATCGTTGAGGGATCCGTTGCTGGAGTTGGGCGACGAGGAGGATGGGATAT
GTAGTACGCCTTGA
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Synonyms
Publications