jgi.p|Nanoce1779_2|599109, mRNA_7542 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599109
Unique NamemRNA_7542
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length319
Alignment locationscaffold_20:217105..217423 -

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Properties
Property NameValue
TranscriptId599195
TrackFilteredModels2
ProteinId599109
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:217105..217423 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599109gene_7542Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599109mRNA_7542-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7542CDS_7542Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7542 ID=mRNA_7542|Name=jgi.p|Nanoce1779_2|599109|organism=Nannochloropsis oceanica|type=mRNA|length=319bp
TGATGTTCTCAAGCAGCCACTCGCTTACCCCTACGAAGACACCATCCCAC
CTCCTCCTTCTCCTCCTACTCCTCCTACTCCTCCCACCTTCCCTCCCTCC
TTGGCCCTCGACACCTTTCTCGACAACACAGCCTTCTTACTGTCGTAATT
CAGCGTCAGATACAAACTTTCCTTCACTCTACTCCCATCCTCCTTCACCT
GTTCCTCCTCGTTAATTTTGATCTTCACCACCTTCTGTTGCTCATCCTTG
CCCTCCTTCCCTCCCTCCCTTGCCCCATGCAAATAGAAACTGCGGATGCG
CTCGTCATCTTGGGGAGTC
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protein sequence of jgi.p|Nanoce1779_2|599109

>mRNA_7542-protein ID=mRNA_7542-protein|Name=jgi.p|Nanoce1779_2|599109|organism=Nannochloropsis oceanica|type=polypeptide|length=71bp
MFSSSHSLTPTKTPSHLLLLLLLLLLLPPSLPPWPSTPFSTTQPSYCRNS
ASDTNFPSLYSHPPSPVPPR*
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mRNA from alignment at scaffold_20:217105..217423-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7542 ID=mRNA_7542|Name=jgi.p|Nanoce1779_2|599109|organism=Nannochloropsis oceanica|type=mRNA|length=319bp|location=Sequence derived from alignment at scaffold_20:217105..217423- (Nannochloropsis oceanica)
TGATGTTCTCAAGCAGCCACTCGCTTACCCCTACGAAGACACCATCCCAC
CTCCTCCTTCTCCTCCTACTCCTCCTACTCCTCCCACCTTCCCTCCCTCC
TTGGCCCTCGACACCTTTCTCGACAACACAGCCTTCTTACTGTCGTAATT
CAGCGTCAGATACAAACTTTCCTTCACTCTACTCCCATCCTCCTTCACCT
GTTCCTCCTCGTTAATTTTGATCTTCACCACCTTCTGTTGCTCATCCTTG
CCCTCCTTCCCTCCCTCCCTTGCCCCATGCAAATAGAAACTGCGGATGCG
CTCGTCATCTTGGGGAGTC
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Coding sequence (CDS) from alignment at scaffold_20:217105..217423-

>mRNA_7542 ID=mRNA_7542|Name=jgi.p|Nanoce1779_2|599109|organism=Nannochloropsis oceanica|type=CDS|length=213bp|location=Sequence derived from alignment at scaffold_20:217105..217423- (Nannochloropsis oceanica)
ATGTTCTCAAGCAGCCACTCGCTTACCCCTACGAAGACACCATCCCACCT
CCTCCTTCTCCTCCTACTCCTCCTACTCCTCCCACCTTCCCTCCCTCCTT
GGCCCTCGACACCTTTCTCGACAACACAGCCTTCTTACTGTCGTAATTCA
GCGTCAGATACAAACTTTCCTTCACTCTACTCCCATCCTCCTTCACCTGT
TCCTCCTCGTTAA
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Synonyms
Publications