jgi.p|Nanoce1779_2|599106, mRNA_7541 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599106
Unique NamemRNA_7541
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length766
Alignment locationscaffold_20:212675..213440 +

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Properties
Property NameValue
TranscriptId599192
TrackFilteredModels2
ProteinId599106
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:212675..213440 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599106gene_7541Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599106mRNA_7541-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7541CDS_7541Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7541 ID=mRNA_7541|Name=jgi.p|Nanoce1779_2|599106|organism=Nannochloropsis oceanica|type=mRNA|length=766bp
TGCTCTTGCCACTTTCTCCTTCCTCTTCTTCCTCCTCATCCTCATCCTCA
TCCTCATCCTCCTCCACCTCCTCATTCTCCTCTTCCTCCTCTTCCTCCTC
CTCCTCCCTCCCCACCACCTGGATTCCGTCTTCCACCCTCATCACTTTCG
ATGACGGCATGGCCAACTGTAAGTGCATGAGTCGTTCCCCCCCATCCTCT
CTCGCTACTTCCTCCTCTTCGTACAAGACTTCCCATAAGTCTCTCAACCT
TCGCGCCACCTTTCCTCGCCTTCCTCCTTCCTGCCCTCCTCCGCTTTCTC
CCTCCATCCCTCCCCCTTCTCCCCTCATGCACCCACTCGTCTTTCTTTCC
AAAAACGATGCGACTTCAATTAAGCTCTTCGGATGCTCACACAGGAATTT
CGCTAGCTCTCCCCACTGCTCTCTAACCACGCGATGCAACCCCTCCTTCC
CCCCCTCCCTCGTCCTCCGAGCTAGCGCTTTGCTATTTACATCTGTCGCC
ACTCTGCGGCTACTACAGTTGCTGCTACTGCTGCTAAAGGTGGTATCCAC
AGGAGCAGCGAGAAGGTCAGTGCCGAAGGCAGTGTGTGGAGGGTCGAGAG
CAGCAACTTGATAGTCCTTCAGATCGTCTTTAGCGTAGGGTTGGAAAAAA
GCGGAAGAAGGCAAGGAAGGGATAGAAGGGGAAGATAATTGCAGTTTTCT
CCTATTTATCTCTTGCTGGTGCTGCTGTTGTTGCTGTTGTTGCTGTTGTG
GCTGCTGCTGCTGCTG
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protein sequence of jgi.p|Nanoce1779_2|599106

>mRNA_7541-protein ID=mRNA_7541-protein|Name=jgi.p|Nanoce1779_2|599106|organism=Nannochloropsis oceanica|type=polypeptide|length=151bp
MANCKCMSRSPPSSLATSSSSYKTSHKSLNLRATFPRLPPSCPPPLSPSI
PPPSPLMHPLVFLSKNDATSIKLFGCSHRNFASSPHCSLTTRCNPSFPPS
LVLRASALLFTSVATLRLLQLLLLLLKVVSTGAARRSVPKAVCGGSRAAT
*
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mRNA from alignment at scaffold_20:212675..213440+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7541 ID=mRNA_7541|Name=jgi.p|Nanoce1779_2|599106|organism=Nannochloropsis oceanica|type=mRNA|length=766bp|location=Sequence derived from alignment at scaffold_20:212675..213440+ (Nannochloropsis oceanica)
TGCTCTTGCCACTTTCTCCTTCCTCTTCTTCCTCCTCATCCTCATCCTCA
TCCTCATCCTCCTCCACCTCCTCATTCTCCTCTTCCTCCTCTTCCTCCTC
CTCCTCCCTCCCCACCACCTGGATTCCGTCTTCCACCCTCATCACTTTCG
ATGACGGCATGGCCAACTGTAAGTGCATGAGTCGTTCCCCCCCATCCTCT
CTCGCTACTTCCTCCTCTTCGTACAAGACTTCCCATAAGTCTCTCAACCT
TCGCGCCACCTTTCCTCGCCTTCCTCCTTCCTGCCCTCCTCCGCTTTCTC
CCTCCATCCCTCCCCCTTCTCCCCTCATGCACCCACTCGTCTTTCTTTCC
AAAAACGATGCGACTTCAATTAAGCTCTTCGGATGCTCACACAGGAATTT
CGCTAGCTCTCCCCACTGCTCTCTAACCACGCGATGCAACCCCTCCTTCC
CCCCCTCCCTCGTCCTCCGAGCTAGCGCTTTGCTATTTACATCTGTCGCC
ACTCTGCGGCTACTACAGTTGCTGCTACTGCTGCTAAAGGTGGTATCCAC
AGGAGCAGCGAGAAGGTCAGTGCCGAAGGCAGTGTGTGGAGGGTCGAGAG
CAGCAACTTGATAGTCCTTCAGATCGTCTTTAGCGTAGGGTTGGAAAAAA
GCGGAAGAAGGCAAGGAAGGGATAGAAGGGGAAGATAATTGCAGTTTTCT
CCTATTTATCTCTTGCTGGTGCTGCTGTTGTTGCTGTTGTTGCTGTTGTG
GCTGCTGCTGCTGCTG
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Coding sequence (CDS) from alignment at scaffold_20:212675..213440+

>mRNA_7541 ID=mRNA_7541|Name=jgi.p|Nanoce1779_2|599106|organism=Nannochloropsis oceanica|type=CDS|length=453bp|location=Sequence derived from alignment at scaffold_20:212675..213440+ (Nannochloropsis oceanica)
ATGGCCAACTGTAAGTGCATGAGTCGTTCCCCCCCATCCTCTCTCGCTAC
TTCCTCCTCTTCGTACAAGACTTCCCATAAGTCTCTCAACCTTCGCGCCA
CCTTTCCTCGCCTTCCTCCTTCCTGCCCTCCTCCGCTTTCTCCCTCCATC
CCTCCCCCTTCTCCCCTCATGCACCCACTCGTCTTTCTTTCCAAAAACGA
TGCGACTTCAATTAAGCTCTTCGGATGCTCACACAGGAATTTCGCTAGCT
CTCCCCACTGCTCTCTAACCACGCGATGCAACCCCTCCTTCCCCCCCTCC
CTCGTCCTCCGAGCTAGCGCTTTGCTATTTACATCTGTCGCCACTCTGCG
GCTACTACAGTTGCTGCTACTGCTGCTAAAGGTGGTATCCACAGGAGCAG
CGAGAAGGTCAGTGCCGAAGGCAGTGTGTGGAGGGTCGAGAGCAGCAACT
TGA
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Synonyms
Publications