jgi.p|Nanoce1779_2|667758, mRNA_754 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|667758
Unique NamemRNA_754
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2265
Alignment locationscaffold_2:358400..360664 -

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Properties
Property NameValue
TranscriptId667844
TrackFilteredModels2
ProteinId667758
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:358400..360664 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667758gene_754Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667758mRNA_754-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_754CDS_754Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_754 ID=mRNA_754|Name=jgi.p|Nanoce1779_2|667758|organism=Nannochloropsis oceanica|type=mRNA|length=2265bp
CAGCCTCCTCCTTCCTCCCTCCATCTCCCTTATGCACGTTCACCTGCACA
TCACAAATAAATGTGCCATTGCTTCCGTTTTTGACTTCTCGCATCAATAT
ATGCACAGTTATCACTATAACCCGCTTCAGCCGACGTCACGCCCGCCTCG
TCTTGCCTTCCCTTTTCACGGCCGTTGCCCGCACAGCAACGGCCTTGCCA
TCATCGCAACGCGAACCAGTCGCGTCAGGCAGCCTCCACCATGGAGCAGG
CACAGCAGGAAGAACGGGTGCTGCTATGGCTGAAGAAGCGAGGTTACACC
CAGGTGGCTAAGCATTACGAGGAAGACCAAGCGCACGCCGCGGAAGGCAG
CACTGAAGATAATGAGGAGGGCAGCGAGAGCTCAGCTCCCGCCGAGGGTA
GTGCCCCGGCAGACGAGCATCTCTTGTGCAAGCGCATAGGAGAAGCGAAT
CAAAATGCTTTACTCTTTCGTTCTATCCAGTTGGCGGACCCGACGCTCTA
CCATCAAAGCTACAACGAGCTGCAGACCTGGACATGCAACGCCTTAGAGG
CATACAAGCCCGAGCTCCTCACCGTGGCCTTCCCTGTCTTCGTCCACAGC
TATCTCAAGCTCGTCGAACATGGCATGGTCGAAGCAGCGCGAATATTTTT
TCAAACATGGGGACCAGACCATGCCGAGGCCTATCAAATGGAGCTCCGCA
GCCTGGGAGCCGTACAGCGCCCCGACCAATTGACAGCTGGGAACGGGTTC
GTCAAACGCGCATTGACTGACAAGTTAGTCCTTCGTCTCTGCAGTACCAG
CTACCGCCTCTTGCAAGGCTTTTTGAGCGACCACAATCTTCTTTCGATCA
TGGAGATTCTGAATGAGCGGGTTCAGGTTGTGATTGAGGAAAGGGGCCCT
CGACCTCGCTTTGAAGTAGTCACCTTCCGAGACGACGGCGTGGCCGGCCG
TGGAGGACGGGGAGAAGGAGATGGTTCGCCGCGTAAGAATGGGCGATATG
AGATGGCCCACGGGTTTACTGTCCGATGGCGGGTGTACCGACAGAAGGAC
GGCGATCACCGAGATGACAGCAGCATGCCTCCTTTTAATGCCTCGCTCGT
CCCAAAACTTCACAAGCTCTCCTCAAAATATCGCCAAGAGGCAGCCATTG
GCACCGCGGACCCCACTCGCCCTACCGTCTTAATGGGCACCTTGACCAAT
ACATACGATGGGTGCATCGTGGCGCGAATGACAGAGGACGCAACTCAACT
CGCCGCTGGCTTTCACGACCGGGCCGTGCGTGTTTTCCGCCTGGCAGGGC
AGGGCCCCGCAGGAGGCGAGGGAGGGAGCAGTAGCGTGCATGCAAGTAGT
GGCCCACTTATTATGAGAGGGCATTCCCAACCGGTGTATGGCCTGAGCTG
GGCGCCGGAACAGCAGCATTTGCTCTCGGCGTCCGGGGATGGTACGGTCA
GGCTGTGGGACGTTGCGGCTTCGAGAAATGTGTGTGTGTATCGGGCGCCG
ACGGATGTGCCGGTGTGGGATGTGGCATTCTCGCCGGTCGGACATTTCTT
TGCGAGCGGGTCGTATGATCGGGTGGCGAGGGTGTGGAGTACGAATAGAA
CTAAGCCGGTGCGATTGCTGGTCGGGCATTACTCTGATGTGAGTTGTGTG
GCGTGGCACCCTAATTGCAATTACGTGGTGACAGGCTCGTGGGATAAGAC
GGTGCGATTGTGGGATTTGGGCAGTGGTAGATGTTTCCGCATGTATTCGG
GGCATTTTGGGCCCGTGACGGCCTTGGTAGTCAGTCCAGATGGTCAGTTT
GTGGCGGGAGCGGGGGCGGGTGGCAGGGGAGAGCACGGGGAAGAGAATGG
GGTGATTCGAATTTGGGAGGTTGCCTCGGGAAGGGAGGTAGCATTGTTAA
GTGGGCATAGAGGGGGTATCAATCGGTTGACGTACAGTCATGATGGGAAG
GTACTTGCGAGCGCGGGGGAAGATGAAACGGTGTGCACTTGGGATGTTCA
TGGGGACTTTGCGAGTTTGACAGCATCCTTGCCCTTGACGCCACAGAGTC
GGTTCTCGACCAAGGCCACCCGGGTGATGGATGTAGCATTCACGAAGCGG
AATTTGTTGCTAGCGTGTGGGCCAGTTTCGGGGTAAGGTGAGGACGAGGC
AGGGGGTGAGGGAGGGGAGGGGAGAGCAACTAACTGTGCTGCGTTTGTTT
GAAACAGAATAATGTACGGAAGAAAGATAACGATGCGCTGATCAAAACGA
CAAAGAATCAAGTAG
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protein sequence of jgi.p|Nanoce1779_2|667758

>mRNA_754-protein ID=mRNA_754-protein|Name=jgi.p|Nanoce1779_2|667758|organism=Nannochloropsis oceanica|type=polypeptide|length=632bp
MEQAQQEERVLLWLKKRGYTQVAKHYEEDQAHAAEGSTEDNEEGSESSAP
AEGSAPADEHLLCKRIGEANQNALLFRSIQLADPTLYHQSYNELQTWTCN
ALEAYKPELLTVAFPVFVHSYLKLVEHGMVEAARIFFQTWGPDHAEAYQM
ELRSLGAVQRPDQLTAGNGFVKRALTDKLVLRLCSTSYRLLQGFLSDHNL
LSIMEILNERVQVVIEERGPRPRFEVVTFRDDGVAGRGGRGEGDGSPRKN
GRYEMAHGFTVRWRVYRQKDGDHRDDSSMPPFNASLVPKLHKLSSKYRQE
AAIGTADPTRPTVLMGTLTNTYDGCIVARMTEDATQLAAGFHDRAVRVFR
LAGQGPAGGEGGSSSVHASSGPLIMRGHSQPVYGLSWAPEQQHLLSASGD
GTVRLWDVAASRNVCVYRAPTDVPVWDVAFSPVGHFFASGSYDRVARVWS
TNRTKPVRLLVGHYSDVSCVAWHPNCNYVVTGSWDKTVRLWDLGSGRCFR
MYSGHFGPVTALVVSPDGQFVAGAGAGGRGEHGEENGVIRIWEVASGREV
ALLSGHRGGINRLTYSHDGKVLASAGEDETVCTWDVHGDFASLTASLPLT
PQSRFSTKATRVMDVAFTKRNLLLACGPVSG*
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mRNA from alignment at scaffold_2:358400..360664-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_754 ID=mRNA_754|Name=jgi.p|Nanoce1779_2|667758|organism=Nannochloropsis oceanica|type=mRNA|length=2265bp|location=Sequence derived from alignment at scaffold_2:358400..360664- (Nannochloropsis oceanica)
CAGCCTCCTCCTTCCTCCCTCCATCTCCCTTATGCACGTTCACCTGCACA
TCACAAATAAATGTGCCATTGCTTCCGTTTTTGACTTCTCGCATCAATAT
ATGCACAGTTATCACTATAACCCGCTTCAGCCGACGTCACGCCCGCCTCG
TCTTGCCTTCCCTTTTCACGGCCGTTGCCCGCACAGCAACGGCCTTGCCA
TCATCGCAACGCGAACCAGTCGCGTCAGGCAGCCTCCACCATGGAGCAGG
CACAGCAGGAAGAACGGGTGCTGCTATGGCTGAAGAAGCGAGGTTACACC
CAGGTGGCTAAGCATTACGAGGAAGACCAAGCGCACGCCGCGGAAGGCAG
CACTGAAGATAATGAGGAGGGCAGCGAGAGCTCAGCTCCCGCCGAGGGTA
GTGCCCCGGCAGACGAGCATCTCTTGTGCAAGCGCATAGGAGAAGCGAAT
CAAAATGCTTTACTCTTTCGTTCTATCCAGTTGGCGGACCCGACGCTCTA
CCATCAAAGCTACAACGAGCTGCAGACCTGGACATGCAACGCCTTAGAGG
CATACAAGCCCGAGCTCCTCACCGTGGCCTTCCCTGTCTTCGTCCACAGC
TATCTCAAGCTCGTCGAACATGGCATGGTCGAAGCAGCGCGAATATTTTT
TCAAACATGGGGACCAGACCATGCCGAGGCCTATCAAATGGAGCTCCGCA
GCCTGGGAGCCGTACAGCGCCCCGACCAATTGACAGCTGGGAACGGGTTC
GTCAAACGCGCATTGACTGACAAGTTAGTCCTTCGTCTCTGCAGTACCAG
CTACCGCCTCTTGCAAGGCTTTTTGAGCGACCACAATCTTCTTTCGATCA
TGGAGATTCTGAATGAGCGGGTTCAGGTTGTGATTGAGGAAAGGGGCCCT
CGACCTCGCTTTGAAGTAGTCACCTTCCGAGACGACGGCGTGGCCGGCCG
TGGAGGACGGGGAGAAGGAGATGGTTCGCCGCGTAAGAATGGGCGATATG
AGATGGCCCACGGGTTTACTGTCCGATGGCGGGTGTACCGACAGAAGGAC
GGCGATCACCGAGATGACAGCAGCATGCCTCCTTTTAATGCCTCGCTCGT
CCCAAAACTTCACAAGCTCTCCTCAAAATATCGCCAAGAGGCAGCCATTG
GCACCGCGGACCCCACTCGCCCTACCGTCTTAATGGGCACCTTGACCAAT
ACATACGATGGGTGCATCGTGGCGCGAATGACAGAGGACGCAACTCAACT
CGCCGCTGGCTTTCACGACCGGGCCGTGCGTGTTTTCCGCCTGGCAGGGC
AGGGCCCCGCAGGAGGCGAGGGAGGGAGCAGTAGCGTGCATGCAAGTAGT
GGCCCACTTATTATGAGAGGGCATTCCCAACCGGTGTATGGCCTGAGCTG
GGCGCCGGAACAGCAGCATTTGCTCTCGGCGTCCGGGGATGGTACGGTCA
GGCTGTGGGACGTTGCGGCTTCGAGAAATGTGTGTGTGTATCGGGCGCCG
ACGGATGTGCCGGTGTGGGATGTGGCATTCTCGCCGGTCGGACATTTCTT
TGCGAGCGGGTCGTATGATCGGGTGGCGAGGGTGTGGAGTACGAATAGAA
CTAAGCCGGTGCGATTGCTGGTCGGGCATTACTCTGATGTGAGTTGTGTG
GCGTGGCACCCTAATTGCAATTACGTGGTGACAGGCTCGTGGGATAAGAC
GGTGCGATTGTGGGATTTGGGCAGTGGTAGATGTTTCCGCATGTATTCGG
GGCATTTTGGGCCCGTGACGGCCTTGGTAGTCAGTCCAGATGGTCAGTTT
GTGGCGGGAGCGGGGGCGGGTGGCAGGGGAGAGCACGGGGAAGAGAATGG
GGTGATTCGAATTTGGGAGGTTGCCTCGGGAAGGGAGGTAGCATTGTTAA
GTGGGCATAGAGGGGGTATCAATCGGTTGACGTACAGTCATGATGGGAAG
GTACTTGCGAGCGCGGGGGAAGATGAAACGGTGTGCACTTGGGATGTTCA
TGGGGACTTTGCGAGTTTGACAGCATCCTTGCCCTTGACGCCACAGAGTC
GGTTCTCGACCAAGGCCACCCGGGTGATGGATGTAGCATTCACGAAGCGG
AATTTGTTGCTAGCGTGTGGGCCAGTTTCGGGGTAAGGTGAGGACGAGGC
AGGGGGTGAGGGAGGGGAGGGGAGAGCAACTAACTGTGCTGCGTTTGTTT
GAAACAGAATAATGTACGGAAGAAAGATAACGATGCGCTGATCAAAACGA
CAAAGAATCAAGTAG
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Coding sequence (CDS) from alignment at scaffold_2:358400..360664-

>mRNA_754 ID=mRNA_754|Name=jgi.p|Nanoce1779_2|667758|organism=Nannochloropsis oceanica|type=CDS|length=1896bp|location=Sequence derived from alignment at scaffold_2:358400..360664- (Nannochloropsis oceanica)
ATGGAGCAGGCACAGCAGGAAGAACGGGTGCTGCTATGGCTGAAGAAGCG
AGGTTACACCCAGGTGGCTAAGCATTACGAGGAAGACCAAGCGCACGCCG
CGGAAGGCAGCACTGAAGATAATGAGGAGGGCAGCGAGAGCTCAGCTCCC
GCCGAGGGTAGTGCCCCGGCAGACGAGCATCTCTTGTGCAAGCGCATAGG
AGAAGCGAATCAAAATGCTTTACTCTTTCGTTCTATCCAGTTGGCGGACC
CGACGCTCTACCATCAAAGCTACAACGAGCTGCAGACCTGGACATGCAAC
GCCTTAGAGGCATACAAGCCCGAGCTCCTCACCGTGGCCTTCCCTGTCTT
CGTCCACAGCTATCTCAAGCTCGTCGAACATGGCATGGTCGAAGCAGCGC
GAATATTTTTTCAAACATGGGGACCAGACCATGCCGAGGCCTATCAAATG
GAGCTCCGCAGCCTGGGAGCCGTACAGCGCCCCGACCAATTGACAGCTGG
GAACGGGTTCGTCAAACGCGCATTGACTGACAAGTTAGTCCTTCGTCTCT
GCAGTACCAGCTACCGCCTCTTGCAAGGCTTTTTGAGCGACCACAATCTT
CTTTCGATCATGGAGATTCTGAATGAGCGGGTTCAGGTTGTGATTGAGGA
AAGGGGCCCTCGACCTCGCTTTGAAGTAGTCACCTTCCGAGACGACGGCG
TGGCCGGCCGTGGAGGACGGGGAGAAGGAGATGGTTCGCCGCGTAAGAAT
GGGCGATATGAGATGGCCCACGGGTTTACTGTCCGATGGCGGGTGTACCG
ACAGAAGGACGGCGATCACCGAGATGACAGCAGCATGCCTCCTTTTAATG
CCTCGCTCGTCCCAAAACTTCACAAGCTCTCCTCAAAATATCGCCAAGAG
GCAGCCATTGGCACCGCGGACCCCACTCGCCCTACCGTCTTAATGGGCAC
CTTGACCAATACATACGATGGGTGCATCGTGGCGCGAATGACAGAGGACG
CAACTCAACTCGCCGCTGGCTTTCACGACCGGGCCGTGCGTGTTTTCCGC
CTGGCAGGGCAGGGCCCCGCAGGAGGCGAGGGAGGGAGCAGTAGCGTGCA
TGCAAGTAGTGGCCCACTTATTATGAGAGGGCATTCCCAACCGGTGTATG
GCCTGAGCTGGGCGCCGGAACAGCAGCATTTGCTCTCGGCGTCCGGGGAT
GGTACGGTCAGGCTGTGGGACGTTGCGGCTTCGAGAAATGTGTGTGTGTA
TCGGGCGCCGACGGATGTGCCGGTGTGGGATGTGGCATTCTCGCCGGTCG
GACATTTCTTTGCGAGCGGGTCGTATGATCGGGTGGCGAGGGTGTGGAGT
ACGAATAGAACTAAGCCGGTGCGATTGCTGGTCGGGCATTACTCTGATGT
GAGTTGTGTGGCGTGGCACCCTAATTGCAATTACGTGGTGACAGGCTCGT
GGGATAAGACGGTGCGATTGTGGGATTTGGGCAGTGGTAGATGTTTCCGC
ATGTATTCGGGGCATTTTGGGCCCGTGACGGCCTTGGTAGTCAGTCCAGA
TGGTCAGTTTGTGGCGGGAGCGGGGGCGGGTGGCAGGGGAGAGCACGGGG
AAGAGAATGGGGTGATTCGAATTTGGGAGGTTGCCTCGGGAAGGGAGGTA
GCATTGTTAAGTGGGCATAGAGGGGGTATCAATCGGTTGACGTACAGTCA
TGATGGGAAGGTACTTGCGAGCGCGGGGGAAGATGAAACGGTGTGCACTT
GGGATGTTCATGGGGACTTTGCGAGTTTGACAGCATCCTTGCCCTTGACG
CCACAGAGTCGGTTCTCGACCAAGGCCACCCGGGTGATGGATGTAGCATT
CACGAAGCGGAATTTGTTGCTAGCGTGTGGGCCAGTTTCGGGGTAA
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Synonyms
Publications