jgi.p|Nanoce1779_2|599103, mRNA_7539 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|599103
Unique Name	mRNA_7539
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1369
Alignment location	scaffold_20:210162..211911 +

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Properties


Property Name	Value
TranscriptId	599189
Track	FilteredModels2
ProteinId	599103

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_20	supercontig	scaffold_20:210162..211911 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599103	gene_7539	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599103	mRNA_7539-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7539	CDS_7539	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_20:210162..211911+
coding sequence from alignment at scaffold_20:210162..211911+

mRNA sequence

>mRNA_7539 ID=mRNA_7539|Name=jgi.p|Nanoce1779_2|599103|organism=Nannochloropsis oceanica|type=mRNA|length=1369bp
AACAGGACAATGTTGGTAATAAAAAGAAGCCAGGCGTCTGCCGCGACTGC
AACAGCAAAGGCATTCGGCAGGCTCAGACACAGGCCTATTTCCGTCCCAG
TAACGATTGTAGCAGGCCGGCCGGCAGCCTCCTCCTTCTCATCCATGCCC
ACCATGAACATCTTTGACCGGGCGGGGAAGAAACGTCAGCGTGCCCGGGC
TTCCTTGGCATCTAACTGGCCCGAATACGATTATTTGAGGGCGGAAGTTG
CCAAGAGACTTGTGGATCGGTTGGAAGACATTATGCGTGAATTCCCAGAG
GCCTTGGAGTTGGGGGCGTACGGCCCTCACGTTGCCAAGGAGATTTGTGC
TGTCCAGGGATTGAGTGGCAAGGGTGGTGCAGGTGGAATCGAACGCCTGG
TCCGCTGCGGCGTCACCGAGCAAGGCCTCCTCCTTCCCTCTTCCTCTCAT
TCTTCTTCTTCACCGCTCAAAATCCTTCCCGTCCTGGCTGACGAGGAACA
TCTTCCCTTCTCCCCCCAGTCCTTCGATTTGATCATCAGCAATCTCTCTT
TGCATTGGATCAATGACCTCCCCCACGCGATGAGACAAGCCTGCCAAGCC
CTAAAACCCGACGGCGTCCTCCTTGCTTCCATGCTCGGCGGCAACACCCT
CAAAGAGCTTAGGATCGCTCTACAACTCGCCGAACAAGAAAGAGAAGGGG
GTATCTCCCCCCATGTCTCCCCAGCGGCGCATGTGGCTGATTGTGGGGCA
CTATTGCAAGCGGCGGGCTTTGCGTTGCCAACGGTGGACGTGGATACACT
GATTGTAAATTTCCCGGACGCTTTGGTGTTGATGGAGCATCTGCAGGGAA
TGGGAGAGAGCAGTGCCATATTGACGCGTAGACAACACGTTAGTCGAGAG
ACCTTCCTGGCAGCAGCTGCTATATATCAGGAGCTCTATGGGGAAAACGA
CGGGTCGGTCCCGGCTACGTTTCAAGTTGTGTACATGATTGGATGGGCGC
CGCACGAGTCGCAGCCACAGCCCAAGAAGCGGGGTTCGGGGAAGGTGAGT
CTCAAGATGCTGCAGAAAGGGGATATTAGCGAGGGCGGGAATGATGGCAG
TGGTGGGTGTTCAAGGCACAAATAGAAGTAAACATGGAAATGGAAGGAAA
AGAGGAGAGTGAGTGATACTTTCTAAATTGAGTAGTCGCAGTTCAATAGA
AAAATGAAGTAAAAGAAATGGAAAGCTGTGGACTTCCAAAAAAATCAGAG
TTCAAATTTGCTGTATGAGTAGTCGATAGGAAGAAAATGCAGAGAGACTA
AAAGGAGGGAGGAATGAATGAGAAACGAGAGAGGGACGAGCTACGGGATC
CTCTTTTCCATGTGTGATA

protein sequence of jgi.p|Nanoce1779_2|599103

>mRNA_7539-protein ID=mRNA_7539-protein|Name=jgi.p|Nanoce1779_2|599103|organism=Nannochloropsis oceanica|type=polypeptide|length=372bp
MLVIKRSQASAATATAKAFGRLRHRPISVPVTIVAGRPAASSFSSMPTMN
IFDRAGKKRQRARASLASNWPEYDYLRAEVAKRLVDRLEDIMREFPEALE
LGAYGPHVAKEICAVQGLSGKGGAGGIERLVRCGVTEQGLLLPSSSHSSS
SPLKILPVLADEEHLPFSPQSFDLIISNLSLHWINDLPHAMRQACQALKP
DGVLLASMLGGNTLKELRIALQLAEQEREGGISPHVSPAAHVADCGALLQ
AAGFALPTVDVDTLIVNFPDALVLMEHLQGMGESSAILTRRQHVSRETFL
AAAAIYQELYGENDGSVPATFQVVYMIGWAPHESQPQPKKRGSGKVSLKM
LQKGDISEGGNDGSGGCSRHK*

mRNA from alignment at scaffold_20:210162..211911+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7539 ID=mRNA_7539|Name=jgi.p|Nanoce1779_2|599103|organism=Nannochloropsis oceanica|type=mRNA|length=1750bp|location=Sequence derived from alignment at scaffold_20:210162..211911+ (Nannochloropsis oceanica)
AACAGGACAATGTTGGTAATAAAAAGAAGCCAGGCGTCTGCCGCGACTGC
AACAGCAAAGGCATTCGGCAGGCTCAGACACAGGCCTATTTCCGTCCCAG
TAACGATTGTAGCAGGCCGGCCGGCAGCCTCCTCCTTCTCATCCATGCCC
ACCATGAACATCTTTGACCGGGCGGGGAAGAAACGTCAGCGTGCCCGGGC
TTCCTTGGCATCTAACTGGCCCGAATACGATTATTTGAGGGCGGAAGTTG
CCAAGAGACTTGTGGATCGGTTGGAAGACATTATGCGTGAATTCCCAGAG
GCCTTGGAGTTGGGGGCGTACGGCCCTCACGTTGCCAAGGAGATTTGTGC
TGTCCAGGGATTGAGTGGCAGTAAGTAGTAGAGTCACCTTACACCAAGAG
AGTATGCTCGTCGTCTTCCCTTTCAGCACATACATACGCTCATATACACA
CACATACAAATATACGCATACATCTTTACGCAGAGGGTGGTGCAGGTGGA
ATCGAACGCCTGGTCCGCTGCGGCGTCACCGAGCAAGGCCTCCTCCTTCC
CTCTTCCTCTCATTCTTCTTCTTCACCGCTCAAAATCCTTCCCGTCCTGG
CTGACGAGGAACATCTTCCCTTCTCCCCCCAGTCCTTCGATTTGATCATC
AGCAATCTCTCTTTGCATTGGATCAATGACCTCCCCCACGCGATGAGACA
AGCCTGCCAAGCCCTAAAACCCGACGGCGTCCTCCTTGCTTCCATGCTCG
GCGGCAACACCCTCAAAGAGCTTAGGATCGCTCTACAACTCGCCGAACAA
GAAAGAGAAGGGGGTATCTCCCCCCATGTCTCCCCAGCGGCGCATGTGGC
TGATTGTGGGGCACTATTGCAAGCGGCGGGCTTTGCGTTGCCAACGGTGG
ACGTGGATACACTGATTGTAAATTTCCCGGACGCTTTGGTGTTGATGGAG
CATCTGCAGGGAATGGGAGAGAGCAGTGCCATATTGACGCGTAGACAACA
CGTTAGTCGAGAGACCTTCCTGGCAGCAGCTGCTATATATCAGGTAGGGG
CATAGAGATGGAGGGATGGAGAGGAAGCGTTGGTGTTGATGGGCCATTGG
CAGGGAACGAGAGAGTCACGGTCCATTCTGCTGACACGGTGGCCATGTGT
GAGTCAAGCAATTTTTGTGGCAGCATCCACCAGATATCAGATTGGGGAGG
AGGGGCAAGGGCAAGGGCGGGAGGGTAAAAGATTATAGTTGCAGGGCATC
TTTGTGTTATGCTCACACATACTCATTTGAACCTTCCACTCATTCCTGTT
TTCTTCTTCAGGAGCTCTATGGGGAAAACGACGGGTCGGTCCCGGCTACG
TTTCAAGTTGTGTACATGATTGGATGGGCGCCGCACGAGTCGCAGCCACA
GCCCAAGAAGCGGGGTTCGGGGAAGGTGAGTCTCAAGATGCTGCAGAAAG
GGGATATTAGCGAGGGCGGGAATGATGGCAGTGGTGGGTGTTCAAGGCAC
AAATAGAAGTAAACATGGAAATGGAAGGAAAAGAGGAGAGTGAGTGATAC
TTTCTAAATTGAGTAGTCGCAGTTCAATAGAAAAATGAAGTAAAAGAAAT
GGAAAGCTGTGGACTTCCAAAAAAATCAGAGTTCAAATTTGCTGTATGAG
TAGTCGATAGGAAGAAAATGCAGAGAGACTAAAAGGAGGGAGGAATGAAT
GAGAAACGAGAGAGGGACGAGCTACGGGATCCTCTTTTCCATGTGTGATA

Coding sequence (CDS) from alignment at scaffold_20:210162..211911+

>mRNA_7539 ID=mRNA_7539|Name=jgi.p|Nanoce1779_2|599103|organism=Nannochloropsis oceanica|type=CDS|length=3348bp|location=Sequence derived from alignment at scaffold_20:210162..211911+ (Nannochloropsis oceanica)
ATGTTGGTAATAAAAAGAAGCCAGGCGTCTGCCGCGACTGCAACAGCAAA
GGCATTCGGCAGGCTCAGACACAGGCCTATTTCCGTCCCAGTAACGATTG
TAGCAGGCCGGCCGGCAGCCTCCTCCTTCTCATCCATGCCCACCATGAAC
ATCTTTGACCGGGCGGGGAAGAAACGTCAGCGTGCCCGGGCTTCCTTGGC
ATCTAACTGGCCCGAATACGATTATTTGAGGGCGGAAGTTGCCAAGAGAC
TTGTGGATCGGTTGGAAGACATTATGCGTGAATTCCCAGAGGCCTTGGAG
TTGGGGGCGTACGGCCCTCACGTTGCCAAGGAGATTTGTGCTGTCCAGGG
ATTGAGTGGCAAGGGTGGTGCAGGTGGAATCGAACGCCTGGTCCGCTGCG
GCGTCACCGAGCAAGGCCTCCTCCTTCCCTCTTCCTCTCATTCTTCTTCT
TCACCGCTCAAAATCCTTCCCGTCCTGGCTGACGAGGAACATCTTCCCTT
CTCCCCCCAGTCCTTCGATTTGATCATCAGCAATCTCTCTTTGCATTGGA
TCAATGACCTCCCCCACGCGATGAGACAAGCCTGCCAAGCCCTAAAACCC
GACGGCGTCCTCCTTGCTTCCATGCTCGGCGGCAACACCCTCAAAGAGCT
TAGGATCGCTCTACAACTCGCCGAACAAGAAAGAGAAGGGGGTATCTCCC
CCCATGTCTCCCCAGCGGCGCATGTGGCTGATTGTGGGGCACTATTGCAA
GCGGCGGGCTTTGCGTTGCCAACGGTGGACGTGGATACACTGATTGTAAA
TTTCCCGGACGCTTTGGTGTTGATGGAGCATCTGCAGGGAATGGGAGAGA
GCAGTGCCATATTGACGCGTAGACAACACGTTAGTCGAGAGACCTTCCTG
GCAGCAGCTGCTATATATCAGGAGCTCTATGGGGAAAACGACGGGTCGGT
CCCGGCTACGTTTCAAGTTGTGTACATGATTGGATGGGCGCCGCACGAGT
CGCAGCCACAGCCCAAGAAGCGGGGTTCGGGGAAGGTGAGTCTCAAGATG
CTGCAGAAAGGGGATATTAGCGAGGGCGGGAATGATGGCAGTGGTGGGTG
TTCAAGGCACAAATAGATGTTGGTAATAAAAAGAAGCCAGGCGTCTGCCG
CGACTGCAACAGCAAAGGCATTCGGCAGGCTCAGACACAGGCCTATTTCC
GTCCCAGTAACGATTGTAGCAGGCCGGCCGGCAGCCTCCTCCTTCTCATC
CATGCCCACCATGAACATCTTTGACCGGGCGGGGAAGAAACGTCAGCGTG
CCCGGGCTTCCTTGGCATCTAACTGGCCCGAATACGATTATTTGAGGGCG
GAAGTTGCCAAGAGACTTGTGGATCGGTTGGAAGACATTATGCGTGAATT
CCCAGAGGCCTTGGAGTTGGGGGCGTACGGCCCTCACGTTGCCAAGGAGA
TTTGTGCTGTCCAGGGATTGAGTGGCAAGGGTGGTGCAGGTGGAATCGAA
CGCCTGGTCCGCTGCGGCGTCACCGAGCAAGGCCTCCTCCTTCCCTCTTC
CTCTCATTCTTCTTCTTCACCGCTCAAAATCCTTCCCGTCCTGGCTGACG
AGGAACATCTTCCCTTCTCCCCCCAGTCCTTCGATTTGATCATCAGCAAT
CTCTCTTTGCATTGGATCAATGACCTCCCCCACGCGATGAGACAAGCCTG
CCAAGCCCTAAAACCCGACGGCGTCCTCCTTGCTTCCATGCTCGGCGGCA
ACACCCTCAAAGAGCTTAGGATCGCTCTACAACTCGCCGAACAAGAAAGA
GAAGGGGGTATCTCCCCCCATGTCTCCCCAGCGGCGCATGTGGCTGATTG
TGGGGCACTATTGCAAGCGGCGGGCTTTGCGTTGCCAACGGTGGACGTGG
ATACACTGATTGTAAATTTCCCGGACGCTTTGGTGTTGATGGAGCATCTG
CAGGGAATGGGAGAGAGCAGTGCCATATTGACGCGTAGACAACACGTTAG
TCGAGAGACCTTCCTGGCAGCAGCTGCTATATATCAGGAGCTCTATGGGG
AAAACGACGGGTCGGTCCCGGCTACGTTTCAAGTTGTGTACATGATTGGA
TGGGCGCCGCACGAGTCGCAGCCACAGCCCAAGAAGCGGGGTTCGGGGAA
GGTGAGTCTCAAGATGCTGCAGAAAGGGGATATTAGCGAGGGCGGGAATG
ATGGCAGTGGTGGGTGTTCAAGGCACAAATAGATGTTGGTAATAAAAAGA
AGCCAGGCGTCTGCCGCGACTGCAACAGCAAAGGCATTCGGCAGGCTCAG
ACACAGGCCTATTTCCGTCCCAGTAACGATTGTAGCAGGCCGGCCGGCAG
CCTCCTCCTTCTCATCCATGCCCACCATGAACATCTTTGACCGGGCGGGG
AAGAAACGTCAGCGTGCCCGGGCTTCCTTGGCATCTAACTGGCCCGAATA
CGATTATTTGAGGGCGGAAGTTGCCAAGAGACTTGTGGATCGGTTGGAAG
ACATTATGCGTGAATTCCCAGAGGCCTTGGAGTTGGGGGCGTACGGCCCT
CACGTTGCCAAGGAGATTTGTGCTGTCCAGGGATTGAGTGGCAAGGGTGG
TGCAGGTGGAATCGAACGCCTGGTCCGCTGCGGCGTCACCGAGCAAGGCC
TCCTCCTTCCCTCTTCCTCTCATTCTTCTTCTTCACCGCTCAAAATCCTT
CCCGTCCTGGCTGACGAGGAACATCTTCCCTTCTCCCCCCAGTCCTTCGA
TTTGATCATCAGCAATCTCTCTTTGCATTGGATCAATGACCTCCCCCACG
CGATGAGACAAGCCTGCCAAGCCCTAAAACCCGACGGCGTCCTCCTTGCT
TCCATGCTCGGCGGCAACACCCTCAAAGAGCTTAGGATCGCTCTACAACT
CGCCGAACAAGAAAGAGAAGGGGGTATCTCCCCCCATGTCTCCCCAGCGG
CGCATGTGGCTGATTGTGGGGCACTATTGCAAGCGGCGGGCTTTGCGTTG
CCAACGGTGGACGTGGATACACTGATTGTAAATTTCCCGGACGCTTTGGT
GTTGATGGAGCATCTGCAGGGAATGGGAGAGAGCAGTGCCATATTGACGC
GTAGACAACACGTTAGTCGAGAGACCTTCCTGGCAGCAGCTGCTATATAT
CAGGAGCTCTATGGGGAAAACGACGGGTCGGTCCCGGCTACGTTTCAAGT
TGTGTACATGATTGGATGGGCGCCGCACGAGTCGCAGCCACAGCCCAAGA
AGCGGGGTTCGGGGAAGGTGAGTCTCAAGATGCTGCAGAAAGGGGATATT
AGCGAGGGCGGGAATGATGGCAGTGGTGGGTGTTCAAGGCACAAATAG

Synonyms

Publications