jgi.p|Nanoce1779_2|599098, mRNA_7538 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599098
Unique NamemRNA_7538
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1013
Alignment locationscaffold_20:206414..207426 -

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Properties
Property NameValue
TranscriptId599184
TrackFilteredModels2
ProteinId599098
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:206414..207426 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599098gene_7538Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599098mRNA_7538-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7538CDS_7538Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7538 ID=mRNA_7538|Name=jgi.p|Nanoce1779_2|599098|organism=Nannochloropsis oceanica|type=mRNA|length=1013bp
GGCGGCGGCATTTGTACTACAGGCGGACGAGGAGGAGAAAGAGAAAATGG
CGAGCGCGGTAGCCACCGCGGTGGTTCCTGAGGAAGACGAGGAGAAAGAG
GAAAAGGAAGAGGAGGAGGAAAAGCAGCAGCAGCCTGCGTTGGAACCGAG
AAAGAAGGAAAGAGGTAGAAAGGAACAAAGAGATGAGGAGGAAGCAGGGG
CGTGTGGTCCTCTCCATGCGGCGGCAGAAGCTTTTGAAGCAGTCCCCTCT
GTTGACAGGGAAGAGGTGCTTGAAGCAGGGGCTGAGGCAGATGCAGGTAG
CATGGTTGAACCTACGGTGGTCCTGTCCTCCGTCTTGGTGGAAGGGGGAG
AGGAGGACCAAGAAAGTTCCATTCGGCTCGAAGCGAGTGGGGCGGGCGAT
GCGACGGAGGAGCAAAAGCAAGAGAAGGATGAGGATGAGGGCAGCTCCAG
CAATGGAAAGGACAGGACAGTGGAAGAGGCAGGCCTGATTGAGGAGGAGT
AGCAAGCTACGACAAGTATAGAAGAGAAGAATGAAGAAAATGGGGTGACA
GTGACGACAGTTGTCTCTGGCGCCGAGCAAGAGGTTGAGAATTAGAAACG
TGGTGGACGACAGTGCATGGAACGAGGAGAAAGATATAGAGAGAGGAGAA
TATAATCTACCAATGTAGGAAAATGAGAGCAAGTACAATTAATTTTAAAA
GAATTGGAGGGTGGAGAATCATGAGGGATGCTGTGTCGCTGATCTCTCCG
GCCAAGAGAAAGTGGTCGAATGACAGATGAGTCGTGGCGTAGAGATCGTA
CTGTGTGAAACATGCCCGGATGTGTCGTGTTGATGTGTGTGTGCACCATA
TCTTTGTATGTACTAACTCAGGAAAGTCGCACTGGAATTTGGTTTCATTG
GAATACGGTGCCATGCGCAGTGCGACATCAAGGAGAGACACAAGCAAGAA
GACAAATAAAAAAAACTCAAATGTATAGGCTACAATTGGTTATGTAGTCG
CTTTCCGTGTTCC
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protein sequence of jgi.p|Nanoce1779_2|599098

>mRNA_7538-protein ID=mRNA_7538-protein|Name=jgi.p|Nanoce1779_2|599098|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MASAVATAVVPEEDEEKEEKEEEEEKQQQPALEPRKKERGRKEQRDEEEA
GACGPLHAAAEAFEAVPSVDREEVLEAGAEADAGSMVEPTVVLSSVLVEG
GEEDQESSIRLEASGAGDATEEQKQEKDEDEGSSSNGKDRTVEEAGLIEE
E*
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mRNA from alignment at scaffold_20:206414..207426-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7538 ID=mRNA_7538|Name=jgi.p|Nanoce1779_2|599098|organism=Nannochloropsis oceanica|type=mRNA|length=1013bp|location=Sequence derived from alignment at scaffold_20:206414..207426- (Nannochloropsis oceanica)
GGCGGCGGCATTTGTACTACAGGCGGACGAGGAGGAGAAAGAGAAAATGG
CGAGCGCGGTAGCCACCGCGGTGGTTCCTGAGGAAGACGAGGAGAAAGAG
GAAAAGGAAGAGGAGGAGGAAAAGCAGCAGCAGCCTGCGTTGGAACCGAG
AAAGAAGGAAAGAGGTAGAAAGGAACAAAGAGATGAGGAGGAAGCAGGGG
CGTGTGGTCCTCTCCATGCGGCGGCAGAAGCTTTTGAAGCAGTCCCCTCT
GTTGACAGGGAAGAGGTGCTTGAAGCAGGGGCTGAGGCAGATGCAGGTAG
CATGGTTGAACCTACGGTGGTCCTGTCCTCCGTCTTGGTGGAAGGGGGAG
AGGAGGACCAAGAAAGTTCCATTCGGCTCGAAGCGAGTGGGGCGGGCGAT
GCGACGGAGGAGCAAAAGCAAGAGAAGGATGAGGATGAGGGCAGCTCCAG
CAATGGAAAGGACAGGACAGTGGAAGAGGCAGGCCTGATTGAGGAGGAGT
AGCAAGCTACGACAAGTATAGAAGAGAAGAATGAAGAAAATGGGGTGACA
GTGACGACAGTTGTCTCTGGCGCCGAGCAAGAGGTTGAGAATTAGAAACG
TGGTGGACGACAGTGCATGGAACGAGGAGAAAGATATAGAGAGAGGAGAA
TATAATCTACCAATGTAGGAAAATGAGAGCAAGTACAATTAATTTTAAAA
GAATTGGAGGGTGGAGAATCATGAGGGATGCTGTGTCGCTGATCTCTCCG
GCCAAGAGAAAGTGGTCGAATGACAGATGAGTCGTGGCGTAGAGATCGTA
CTGTGTGAAACATGCCCGGATGTGTCGTGTTGATGTGTGTGTGCACCATA
TCTTTGTATGTACTAACTCAGGAAAGTCGCACTGGAATTTGGTTTCATTG
GAATACGGTGCCATGCGCAGTGCGACATCAAGGAGAGACACAAGCAAGAA
GACAAATAAAAAAAACTCAAATGTATAGGCTACAATTGGTTATGTAGTCG
CTTTCCGTGTTCC
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Coding sequence (CDS) from alignment at scaffold_20:206414..207426-

>mRNA_7538 ID=mRNA_7538|Name=jgi.p|Nanoce1779_2|599098|organism=Nannochloropsis oceanica|type=CDS|length=456bp|location=Sequence derived from alignment at scaffold_20:206414..207426- (Nannochloropsis oceanica)
ATGGCGAGCGCGGTAGCCACCGCGGTGGTTCCTGAGGAAGACGAGGAGAA
AGAGGAAAAGGAAGAGGAGGAGGAAAAGCAGCAGCAGCCTGCGTTGGAAC
CGAGAAAGAAGGAAAGAGGTAGAAAGGAACAAAGAGATGAGGAGGAAGCA
GGGGCGTGTGGTCCTCTCCATGCGGCGGCAGAAGCTTTTGAAGCAGTCCC
CTCTGTTGACAGGGAAGAGGTGCTTGAAGCAGGGGCTGAGGCAGATGCAG
GTAGCATGGTTGAACCTACGGTGGTCCTGTCCTCCGTCTTGGTGGAAGGG
GGAGAGGAGGACCAAGAAAGTTCCATTCGGCTCGAAGCGAGTGGGGCGGG
CGATGCGACGGAGGAGCAAAAGCAAGAGAAGGATGAGGATGAGGGCAGCT
CCAGCAATGGAAAGGACAGGACAGTGGAAGAGGCAGGCCTGATTGAGGAG
GAGTAG
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Synonyms
Publications