jgi.p|Nanoce1779_2|599096, mRNA_7537 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599096
Unique NamemRNA_7537
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1205
Alignment locationscaffold_20:205228..206432 +

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Properties
Property NameValue
TranscriptId599182
TrackFilteredModels2
ProteinId599096
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:205228..206432 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599096gene_7537Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599096mRNA_7537-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7537CDS_7537Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7537 ID=mRNA_7537|Name=jgi.p|Nanoce1779_2|599096|organism=Nannochloropsis oceanica|type=mRNA|length=1205bp
GCAACAGCAACTTTCTAGACGCCGGCGTCCTGCTGTTTCTGTGTCTTGCC
ACTTTGCAGCGTGTCCAGCTGCAACAGCAGCTACGGCGCTGTAACGACGA
TAGCAACCTTATCTTTTCCCCTTCTCAACCCCATCCGCAAACCAGTCGAA
CAGTCTCTGCTCTCTTCTCCAAGCCGCACGGGCAAAGCAAGCAAGAAATG
ACGCAGCGCCACGGCACAACCCACACCGCCACATTGCTGGGCCTGCTCCT
GGCTACCAACAGTTTGGTAAATGCCTTCCTGCCCATTACTCCCGTGCTAA
TGCGCAGTAGCATCAGGATCCAGACTTTGTCTTCCAATATTGCAATGAAT
TACATCTCCTTCCGCCCTGCCTCCCCCGCGTTCAACCACGCCCCCGTCGC
CCTTGCGGCCGCCGCTATGGACGACGACAAAGGAAAGACGGACAAGATTA
AAGAAGAGCTTGAGCATGAGCTACCGGTAGGAGAGCACGAAGAGGAAGGA
GCTGAGGCAGCAGGCAAGCCTGCAGCAGGTGCCGCGCCTACTACGGTGGT
GGACGACGTGTTCAACTCGCTTCCCTTCTTGCAGAAACGGAAGGAGGCGA
TGGAGAAGGAAATGGCGTCCATCGACGAAAACCTCCAAACACTGTCCGAA
CAATTTGGGGAACTGGCTGGAGAATGGGATGGGAAAGTGGCAGTGATGAA
GAGGGACTACGATAACCTGAAGGCTAAATACTACAACGACACGCTTGAGG
TAGCGACGACTGGTCGATCCAACGTATTCGTCGAAATCATGGGTGTCGTC
GATGATTTCGAGAGGGCGCGGATGGCGTACAAGCCGGGGGGGGAGGAAGA
GGCGGCGATTCTGGAGAGCTACGAGGGAGTGAAAGATGCCATTGTAAAGG
GGATGATGAATGAGGGCTTGGTGGAGGTCAAGACTGTGGGGGAACCGTTT
GATTTCAAATTGCACGATTGCATGTTCACGGAGGCGAGTGATGAGTGGCC
GGAAGATATCATTACGCGGGAGTTTAGTAAAGGGTTTATGATAGGGGAGA
AGGTGGTGAGGCCCGCCAAGGTAGCTTGTTCTTTAGGCCCTGGTCCGTAG
AAAATTGAGCGGTTCGCCCTTCCCTTCTTTCATTCCTCGTCACTCAATCA
ATCCAGCGATAGTGACATCTCCGAATTTAAAGAACAGGAACACGGAAAGC
GACTA
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protein sequence of jgi.p|Nanoce1779_2|599096

>mRNA_7537-protein ID=mRNA_7537-protein|Name=jgi.p|Nanoce1779_2|599096|organism=Nannochloropsis oceanica|type=polypeptide|length=301bp
MTQRHGTTHTATLLGLLLATNSLVNAFLPITPVLMRSSIRIQTLSSNIAM
NYISFRPASPAFNHAPVALAAAAMDDDKGKTDKIKEELEHELPVGEHEEE
GAEAAGKPAAGAAPTTVVDDVFNSLPFLQKRKEAMEKEMASIDENLQTLS
EQFGELAGEWDGKVAVMKRDYDNLKAKYYNDTLEVATTGRSNVFVEIMGV
VDDFERARMAYKPGGEEEAAILESYEGVKDAIVKGMMNEGLVEVKTVGEP
FDFKLHDCMFTEASDEWPEDIITREFSKGFMIGEKVVRPAKVACSLGPGP
*
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mRNA from alignment at scaffold_20:205228..206432+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7537 ID=mRNA_7537|Name=jgi.p|Nanoce1779_2|599096|organism=Nannochloropsis oceanica|type=mRNA|length=1205bp|location=Sequence derived from alignment at scaffold_20:205228..206432+ (Nannochloropsis oceanica)
GCAACAGCAACTTTCTAGACGCCGGCGTCCTGCTGTTTCTGTGTCTTGCC
ACTTTGCAGCGTGTCCAGCTGCAACAGCAGCTACGGCGCTGTAACGACGA
TAGCAACCTTATCTTTTCCCCTTCTCAACCCCATCCGCAAACCAGTCGAA
CAGTCTCTGCTCTCTTCTCCAAGCCGCACGGGCAAAGCAAGCAAGAAATG
ACGCAGCGCCACGGCACAACCCACACCGCCACATTGCTGGGCCTGCTCCT
GGCTACCAACAGTTTGGTAAATGCCTTCCTGCCCATTACTCCCGTGCTAA
TGCGCAGTAGCATCAGGATCCAGACTTTGTCTTCCAATATTGCAATGAAT
TACATCTCCTTCCGCCCTGCCTCCCCCGCGTTCAACCACGCCCCCGTCGC
CCTTGCGGCCGCCGCTATGGACGACGACAAAGGAAAGACGGACAAGATTA
AAGAAGAGCTTGAGCATGAGCTACCGGTAGGAGAGCACGAAGAGGAAGGA
GCTGAGGCAGCAGGCAAGCCTGCAGCAGGTGCCGCGCCTACTACGGTGGT
GGACGACGTGTTCAACTCGCTTCCCTTCTTGCAGAAACGGAAGGAGGCGA
TGGAGAAGGAAATGGCGTCCATCGACGAAAACCTCCAAACACTGTCCGAA
CAATTTGGGGAACTGGCTGGAGAATGGGATGGGAAAGTGGCAGTGATGAA
GAGGGACTACGATAACCTGAAGGCTAAATACTACAACGACACGCTTGAGG
TAGCGACGACTGGTCGATCCAACGTATTCGTCGAAATCATGGGTGTCGTC
GATGATTTCGAGAGGGCGCGGATGGCGTACAAGCCGGGGGGGGAGGAAGA
GGCGGCGATTCTGGAGAGCTACGAGGGAGTGAAAGATGCCATTGTAAAGG
GGATGATGAATGAGGGCTTGGTGGAGGTCAAGACTGTGGGGGAACCGTTT
GATTTCAAATTGCACGATTGCATGTTCACGGAGGCGAGTGATGAGTGGCC
GGAAGATATCATTACGCGGGAGTTTAGTAAAGGGTTTATGATAGGGGAGA
AGGTGGTGAGGCCCGCCAAGGTAGCTTGTTCTTTAGGCCCTGGTCCGTAG
AAAATTGAGCGGTTCGCCCTTCCCTTCTTTCATTCCTCGTCACTCAATCA
ATCCAGCGATAGTGACATCTCCGAATTTAAAGAACAGGAACACGGAAAGC
GACTA
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Coding sequence (CDS) from alignment at scaffold_20:205228..206432+

>mRNA_7537 ID=mRNA_7537|Name=jgi.p|Nanoce1779_2|599096|organism=Nannochloropsis oceanica|type=CDS|length=903bp|location=Sequence derived from alignment at scaffold_20:205228..206432+ (Nannochloropsis oceanica)
ATGACGCAGCGCCACGGCACAACCCACACCGCCACATTGCTGGGCCTGCT
CCTGGCTACCAACAGTTTGGTAAATGCCTTCCTGCCCATTACTCCCGTGC
TAATGCGCAGTAGCATCAGGATCCAGACTTTGTCTTCCAATATTGCAATG
AATTACATCTCCTTCCGCCCTGCCTCCCCCGCGTTCAACCACGCCCCCGT
CGCCCTTGCGGCCGCCGCTATGGACGACGACAAAGGAAAGACGGACAAGA
TTAAAGAAGAGCTTGAGCATGAGCTACCGGTAGGAGAGCACGAAGAGGAA
GGAGCTGAGGCAGCAGGCAAGCCTGCAGCAGGTGCCGCGCCTACTACGGT
GGTGGACGACGTGTTCAACTCGCTTCCCTTCTTGCAGAAACGGAAGGAGG
CGATGGAGAAGGAAATGGCGTCCATCGACGAAAACCTCCAAACACTGTCC
GAACAATTTGGGGAACTGGCTGGAGAATGGGATGGGAAAGTGGCAGTGAT
GAAGAGGGACTACGATAACCTGAAGGCTAAATACTACAACGACACGCTTG
AGGTAGCGACGACTGGTCGATCCAACGTATTCGTCGAAATCATGGGTGTC
GTCGATGATTTCGAGAGGGCGCGGATGGCGTACAAGCCGGGGGGGGAGGA
AGAGGCGGCGATTCTGGAGAGCTACGAGGGAGTGAAAGATGCCATTGTAA
AGGGGATGATGAATGAGGGCTTGGTGGAGGTCAAGACTGTGGGGGAACCG
TTTGATTTCAAATTGCACGATTGCATGTTCACGGAGGCGAGTGATGAGTG
GCCGGAAGATATCATTACGCGGGAGTTTAGTAAAGGGTTTATGATAGGGG
AGAAGGTGGTGAGGCCCGCCAAGGTAGCTTGTTCTTTAGGCCCTGGTCCG
TAG
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Synonyms
Publications