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Properties
| Property Name | Value |
|---|
| TranscriptId | 531765 |
| Track | FilteredModels2 |
| ProteinId | 531679 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_20 | supercontig | scaffold_20:202887..205067 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_7536 ID=mRNA_7536|Name=jgi.p|Nanoce1779_2|531679|organism=Nannochloropsis oceanica|type=mRNA|length=1203bp
ATGGGTAGAGGCCGCGGTGGTTGGGGAGGAGGAGGACGGGGGAGGGGAAG
GGGAGGTAGGGGACGGGGGAAATGGGGCGATGGTGGTGGTGGTCCAAAAG
CCAACAAGCGCAAAAGTGGAGGATCAGAGGAAGTTGGAGGAGAAGACGGT
TGTGCTTATAAGCATCCTCGATTTAATGATAGCAAAGAACCTCATTCGGG
GTCTTATGCTGCGCAAGTCAGGGAGAATGAAGATGGGCAGGGCATTCAGT
TGGGGAACAAGAAAAAGGTCGCCTTGGTCATTGGGTACTGCGGGACGGAT
TTTCAAGGCATGCAGATGAATCCGGGTGCGGCCTCCATCGAAGCAGAGCT
GGAAAAGGCCATGTTTGAGGCGGGTTGTATTAAAAAAGAAAATTTTGGGA
ATTTGCAGAAAATTGGGTGGTCTCGGGCGGGAAGAACTGATAAGGGTGTT
CATGCTGCAGCGCAGATTGTGGGATCCTCCTCCTCCGCCCTTTCTCCCGA
TGATCTTGCGGACGCTTTCGAACGTACCCGCGATTCAATCAACGAAAAAC
TTCCTCCTTCCATCCGTGTCCACGGTGTATTACGTGCAACGCGAGGGTTC
AACGCTAAAAATGATTGTACCAAACGTAGATATTGCTACTGGCTCCCCAC
TTTCCTGCTGGCGGATGCTGAGGGTCGGGAAGAGAGAGAGGGAGGTAGAT
TGAAGCCTTATCGCGTGAGCCGACAAAAAATAGATTTATTAAAAAATACA
CTGAAGCGGTATCTGGGTACTCACAAATTTCACAACTTCTCGATTCGCAT
GAGCTATCGGTCGGGGGCGGTTCAGCGATATATAATGGGGGTGGAGGTAT
CGGAGCCGACAGGGAAGGGAGAAGGGATAGAGTGGTGCAGCATAACGGTG
GTGGGGCAGGCGTTTTTGTTGCATCAGATTCGGAAGATGGTGGCGGTGGC
AATTAAGATTACCCGTGGCTCCGCCACTCCCACCCTTATCGAAGACGCCT
ACGAGGACGTGATGCTCACCTTGCCCATGGCCCCGTCCGACGGCCTCTTC
CTCGACAAAGCCTTTTTTGAACAGTACAACAACCGCGCGACGCAGATCGG
CTTGGCTGCGTCCCTGGACTGGGAAGATGACAGTGGAGGTGGTGAGGAAG
GGAGGGAAAGACGGGCGGCAGGGAAGAGGGGGAGGGAGAGAGAGTGGAAA
TAA back to topprotein sequence of jgi.p|Nanoce1779_2|531679 >mRNA_7536-protein ID=mRNA_7536-protein|Name=jgi.p|Nanoce1779_2|531679|organism=Nannochloropsis oceanica|type=polypeptide|length=401bp
MGRGRGGWGGGGRGRGRGGRGRGKWGDGGGGPKANKRKSGGSEEVGGEDG
CAYKHPRFNDSKEPHSGSYAAQVRENEDGQGIQLGNKKKVALVIGYCGTD
FQGMQMNPGAASIEAELEKAMFEAGCIKKENFGNLQKIGWSRAGRTDKGV
HAAAQIVGSSSSALSPDDLADAFERTRDSINEKLPPSIRVHGVLRATRGF
NAKNDCTKRRYCYWLPTFLLADAEGREEREGGRLKPYRVSRQKIDLLKNT
LKRYLGTHKFHNFSIRMSYRSGAVQRYIMGVEVSEPTGKGEGIEWCSITV
VGQAFLLHQIRKMVAVAIKITRGSATPTLIEDAYEDVMLTLPMAPSDGLF
LDKAFFEQYNNRATQIGLAASLDWEDDSGGGEEGRERRAAGKRGREREWK
* back to topmRNA from alignment at scaffold_20:202887..205067- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_7536 ID=mRNA_7536|Name=jgi.p|Nanoce1779_2|531679|organism=Nannochloropsis oceanica|type=mRNA|length=2181bp|location=Sequence derived from alignment at scaffold_20:202887..205067- (Nannochloropsis oceanica)
ATGGGTAGAGGCCGCGGTGGTTGGGGAGGAGGAGGACGGGGGAGGGGAAG
GGGAGGTAGGGGACGGGGGAAATGGGGCGATGGTGGTGGTGGTCCAAAAG
CCAACAAGCGCAAAAGTGGAGGATCAGAGGAAGTTGGAGGAGAAGACGGT
TGTGCTTATAAGCATCCTCGATTTAATGATAGCAAAGAACCTCATTCGGG
GTCTTATGCTGCGCAAGTCAGGGAGAATGAAGATGGGCAGGGCATTCAGT
TGGGGAACAAGAAAAAGGTCGCCTTGGTCATTGGGTACTGCGGGACGGAT
TTTCAAGGCATGCAGATGAATCCGGGTGCGGCCTCCATCGAAGCAGAGCT
GGAAAAGGCCATGTTTGAGGCGGGTTGTATTAAAAAAGAAAATTTTGGGA
ATTTGCAGAAAATTGGGTGGTCTCGGGCGGGAAGAACTGATAAGGGTGTT
CATGCTGCAGCGCAGATTGTGGGATGTAAGCTGCATGTGAAGATGAAAGA
GGAGGAAGATGAGGGGGGGGAGAAGGTGATGGCAAAAAAGGGTACGGGGG
AGAGAGGCGGAGGAGGTGGAGAGGGAGGGGGAGGGGTGGCGGTTGCAAAG
GAGGAGAAGAAAAAGAAGGAGGAAGAGGGGACTGGAATGGTGAAAGAAGG
AAATATGAGAGATATTTCCATCGCCATGACAACTGCGGACTCGGATACAG
CTGTAGCGACAGAAGCAGTGCAAACAGCAACAGCAACATCTACAACAGTA
GCGCCACCACCACCAGCAGCAGCAGCTTCACCTACCACCCAAGCCTCCTC
CTCCGCCCTTTCTCCCGATGATCTTGCGGACGCTTTCGAACGTACCCGCG
ATTCAATCAACGAAAAACTTCCTCCTTCCATCCGTGTCCACGGTGTATTA
CGTGCAACGCGAGGGTTCAACGCTAAAAATGATTGTACCAAACGTAGATA
TTGCTACTGGCTCCCCACTTTCCTGCTGGCGGATGCTGAGGGTCGGGAAG
AGAGAGAGGGAGGTGTGAAAGGAGGGGTGGGTGCGTGGTTGGATGCTTGT
GCGCAGCAGAAGAAGAAAAAGGAGAGGAAAGTGGTCTTGGATGCCAAGGC
AGAAGGGGAGGAGGGAGTAAAGAAAGAGGGGTTGGAGGTGGAGGAGCAGG
AGGAGGAGCAGGAGGAGGAAAAAGACGGGATAAGTACAGAGCAGCAGGAT
GAAGAAGACGAAGAAACGGGCACTGGCGGGGCAGATGACGACGACGATGA
CGATGCCCCCCCTCCTCCTCCTCTTGTCCCTGCCCTTGTCTCCTCCTCCC
CCCCTCCCTCCTCATCCAACCGGGGAAGTCCCTCCGCGAACTACCCTCAG
CCTGACATGGGCTTGCTGAAACAGTGCTACCTGGAGAGATTGAAGCCTTA
TCGCGTGAGCCGACAAAAAATAGATTTATTAAAAAATACACTGAAGCGGT
ATCTGGGTACTCACAAATTTCACAACTTCTCGATTCGCATGAGCTATCGG
TCGGGGGCGGTTCAGCGATATATAATGGGGGTGGAGGTATCGGAGCCGGT
GGTGGTGATGGAGGGAGGGGAGGAGACAAGTGAAGAGACAGGGAAGGGAG
AAGGGATAGAGTGGTGCAGCATAACGGTGGTGGGGCAGGCGTTTTTGTTG
CATCAGATTCGGAAGATGGTGGCGGTGGCAATTAAGGTAAGCAGCTTAGT
TTTTTATTTAGTTCTTTTTGGGTCTATCTTCTATTTATTTGCCTATACAT
ATTTTTATTAATCTCTCTGTATTATACATACAAATTTATTTGTCTTTGAT
TTAACCAATTTATTTATTTCTTAATTTATACATGCACTGCAGCCATGATG
GCAGCTGTGCATGTTCATACTTTCTTCCTTTTAAAATCACAAATAAAAAA
ATAAATGTTTATTCCATACCGAAATATACGCACAGATTACCCGTGGCTCC
GCCACTCCCACCCTTATCGAAGACGCCTACGAGGACGTGATGCTCACCTT
GCCCATGGCCCCGTCCGACGGCCTCTTCCTCGACAAAGCCTTTTTTGAAC
AGTACAACAACCGCGCGACGCAGATCGGCTTGGCTGCGTCCCTGGACTGG
GAAGATGACAGTGGAGGTGGTGAGGAAGGGAGGGAAAGACGGGCGGCAGG
GAAGAGGGGGAGGGAGAGAGAGTGGAAATAA back to topCoding sequence (CDS) from alignment at scaffold_20:202887..205067- >mRNA_7536 ID=mRNA_7536|Name=jgi.p|Nanoce1779_2|531679|organism=Nannochloropsis oceanica|type=CDS|length=6015bp|location=Sequence derived from alignment at scaffold_20:202887..205067- (Nannochloropsis oceanica)
ATTACCCGTGGCTCCGCCACTCCCACCCTTATCGAAGACGCCTACGAGGA
CGTGATGCTCACCTTGCCCATGGCCCCGTCCGACGGCCTCTTCCTCGACA
AAGCCTTTTTTGAACAGTACAACAACCGCGCGACGCAGATCGGCTTGGCT
GCGTCCCTGGACTGGGAAGATGACAGTGGAGGTGGTGAGGAAGGGAGGGA
AAGACGGGCGGCAGGGAAGAGGGGGAGGGAGAGAGAGTGGAAATAAACAG
GGAAGGGAGAAGGGATAGAGTGGTGCAGCATAACGGTGGTGGGGCAGGCG
TTTTTGTTGCATCAGATTCGGAAGATGGTGGCGGTGGCAATTAAGAGATT
GAAGCCTTATCGCGTGAGCCGACAAAAAATAGATTTATTAAAAAATACAC
TGAAGCGGTATCTGGGTACTCACAAATTTCACAACTTCTCGATTCGCATG
AGCTATCGGTCGGGGGCGGTTCAGCGATATATAATGGGGGTGGAGGTATC
GGAGCCGCCTCCTCCTCCGCCCTTTCTCCCGATGATCTTGCGGACGCTTT
CGAACGTACCCGCGATTCAATCAACGAAAAACTTCCTCCTTCCATCCGTG
TCCACGGTGTATTACGTGCAACGCGAGGGTTCAACGCTAAAAATGATTGT
ACCAAACGTAGATATTGCTACTGGCTCCCCACTTTCCTGCTGGCGGATGC
TGAGGGTCGGGAAGAGAGAGAGGGAGGTATGGGTAGAGGCCGCGGTGGTT
GGGGAGGAGGAGGACGGGGGAGGGGAAGGGGAGGTAGGGGACGGGGGAAA
TGGGGCGATGGTGGTGGTGGTCCAAAAGCCAACAAGCGCAAAAGTGGAGG
ATCAGAGGAAGTTGGAGGAGAAGACGGTTGTGCTTATAAGCATCCTCGAT
TTAATGATAGCAAAGAACCTCATTCGGGGTCTTATGCTGCGCAAGTCAGG
GAGAATGAAGATGGGCAGGGCATTCAGTTGGGGAACAAGAAAAAGGTCGC
CTTGGTCATTGGGTACTGCGGGACGGATTTTCAAGGCATGCAGATGAATC
CGGGTGCGGCCTCCATCGAAGCAGAGCTGGAAAAGGCCATGTTTGAGGCG
GGTTGTATTAAAAAAGAAAATTTTGGGAATTTGCAGAAAATTGGGTGGTC
TCGGGCGGGAAGAACTGATAAGGGTGTTCATGCTGCAGCGCAGATTGTGG
GATATTACCCGTGGCTCCGCCACTCCCACCCTTATCGAAGACGCCTACGA
GGACGTGATGCTCACCTTGCCCATGGCCCCGTCCGACGGCCTCTTCCTCG
ACAAAGCCTTTTTTGAACAGTACAACAACCGCGCGACGCAGATCGGCTTG
GCTGCGTCCCTGGACTGGGAAGATGACAGTGGAGGTGGTGAGGAAGGGAG
GGAAAGACGGGCGGCAGGGAAGAGGGGGAGGGAGAGAGAGTGGAAATAAA
CAGGGAAGGGAGAAGGGATAGAGTGGTGCAGCATAACGGTGGTGGGGCAG
GCGTTTTTGTTGCATCAGATTCGGAAGATGGTGGCGGTGGCAATTAAGAG
ATTGAAGCCTTATCGCGTGAGCCGACAAAAAATAGATTTATTAAAAAATA
CACTGAAGCGGTATCTGGGTACTCACAAATTTCACAACTTCTCGATTCGC
ATGAGCTATCGGTCGGGGGCGGTTCAGCGATATATAATGGGGGTGGAGGT
ATCGGAGCCGCCTCCTCCTCCGCCCTTTCTCCCGATGATCTTGCGGACGC
TTTCGAACGTACCCGCGATTCAATCAACGAAAAACTTCCTCCTTCCATCC
GTGTCCACGGTGTATTACGTGCAACGCGAGGGTTCAACGCTAAAAATGAT
TGTACCAAACGTAGATATTGCTACTGGCTCCCCACTTTCCTGCTGGCGGA
TGCTGAGGGTCGGGAAGAGAGAGAGGGAGGTATGGGTAGAGGCCGCGGTG
GTTGGGGAGGAGGAGGACGGGGGAGGGGAAGGGGAGGTAGGGGACGGGGG
AAATGGGGCGATGGTGGTGGTGGTCCAAAAGCCAACAAGCGCAAAAGTGG
AGGATCAGAGGAAGTTGGAGGAGAAGACGGTTGTGCTTATAAGCATCCTC
GATTTAATGATAGCAAAGAACCTCATTCGGGGTCTTATGCTGCGCAAGTC
AGGGAGAATGAAGATGGGCAGGGCATTCAGTTGGGGAACAAGAAAAAGGT
CGCCTTGGTCATTGGGTACTGCGGGACGGATTTTCAAGGCATGCAGATGA
ATCCGGGTGCGGCCTCCATCGAAGCAGAGCTGGAAAAGGCCATGTTTGAG
GCGGGTTGTATTAAAAAAGAAAATTTTGGGAATTTGCAGAAAATTGGGTG
GTCTCGGGCGGGAAGAACTGATAAGGGTGTTCATGCTGCAGCGCAGATTG
TGGGATATTACCCGTGGCTCCGCCACTCCCACCCTTATCGAAGACGCCTA
CGAGGACGTGATGCTCACCTTGCCCATGGCCCCGTCCGACGGCCTCTTCC
TCGACAAAGCCTTTTTTGAACAGTACAACAACCGCGCGACGCAGATCGGC
TTGGCTGCGTCCCTGGACTGGGAAGATGACAGTGGAGGTGGTGAGGAAGG
GAGGGAAAGACGGGCGGCAGGGAAGAGGGGGAGGGAGAGAGAGTGGAAAT
AAACAGGGAAGGGAGAAGGGATAGAGTGGTGCAGCATAACGGTGGTGGGG
CAGGCGTTTTTGTTGCATCAGATTCGGAAGATGGTGGCGGTGGCAATTAA
GAGATTGAAGCCTTATCGCGTGAGCCGACAAAAAATAGATTTATTAAAAA
ATACACTGAAGCGGTATCTGGGTACTCACAAATTTCACAACTTCTCGATT
CGCATGAGCTATCGGTCGGGGGCGGTTCAGCGATATATAATGGGGGTGGA
GGTATCGGAGCCGCCTCCTCCTCCGCCCTTTCTCCCGATGATCTTGCGGA
CGCTTTCGAACGTACCCGCGATTCAATCAACGAAAAACTTCCTCCTTCCA
TCCGTGTCCACGGTGTATTACGTGCAACGCGAGGGTTCAACGCTAAAAAT
GATTGTACCAAACGTAGATATTGCTACTGGCTCCCCACTTTCCTGCTGGC
GGATGCTGAGGGTCGGGAAGAGAGAGAGGGAGGTATGGGTAGAGGCCGCG
GTGGTTGGGGAGGAGGAGGACGGGGGAGGGGAAGGGGAGGTAGGGGACGG
GGGAAATGGGGCGATGGTGGTGGTGGTCCAAAAGCCAACAAGCGCAAAAG
TGGAGGATCAGAGGAAGTTGGAGGAGAAGACGGTTGTGCTTATAAGCATC
CTCGATTTAATGATAGCAAAGAACCTCATTCGGGGTCTTATGCTGCGCAA
GTCAGGGAGAATGAAGATGGGCAGGGCATTCAGTTGGGGAACAAGAAAAA
GGTCGCCTTGGTCATTGGGTACTGCGGGACGGATTTTCAAGGCATGCAGA
TGAATCCGGGTGCGGCCTCCATCGAAGCAGAGCTGGAAAAGGCCATGTTT
GAGGCGGGTTGTATTAAAAAAGAAAATTTTGGGAATTTGCAGAAAATTGG
GTGGTCTCGGGCGGGAAGAACTGATAAGGGTGTTCATGCTGCAGCGCAGA
TTGTGGGATATTACCCGTGGCTCCGCCACTCCCACCCTTATCGAAGACGC
CTACGAGGACGTGATGCTCACCTTGCCCATGGCCCCGTCCGACGGCCTCT
TCCTCGACAAAGCCTTTTTTGAACAGTACAACAACCGCGCGACGCAGATC
GGCTTGGCTGCGTCCCTGGACTGGGAAGATGACAGTGGAGGTGGTGAGGA
AGGGAGGGAAAGACGGGCGGCAGGGAAGAGGGGGAGGGAGAGAGAGTGGA
AATAAACAGGGAAGGGAGAAGGGATAGAGTGGTGCAGCATAACGGTGGTG
GGGCAGGCGTTTTTGTTGCATCAGATTCGGAAGATGGTGGCGGTGGCAAT
TAAGAGATTGAAGCCTTATCGCGTGAGCCGACAAAAAATAGATTTATTAA
AAAATACACTGAAGCGGTATCTGGGTACTCACAAATTTCACAACTTCTCG
ATTCGCATGAGCTATCGGTCGGGGGCGGTTCAGCGATATATAATGGGGGT
GGAGGTATCGGAGCCGCCTCCTCCTCCGCCCTTTCTCCCGATGATCTTGC
GGACGCTTTCGAACGTACCCGCGATTCAATCAACGAAAAACTTCCTCCTT
CCATCCGTGTCCACGGTGTATTACGTGCAACGCGAGGGTTCAACGCTAAA
AATGATTGTACCAAACGTAGATATTGCTACTGGCTCCCCACTTTCCTGCT
GGCGGATGCTGAGGGTCGGGAAGAGAGAGAGGGAGGTATGGGTAGAGGCC
GCGGTGGTTGGGGAGGAGGAGGACGGGGGAGGGGAAGGGGAGGTAGGGGA
CGGGGGAAATGGGGCGATGGTGGTGGTGGTCCAAAAGCCAACAAGCGCAA
AAGTGGAGGATCAGAGGAAGTTGGAGGAGAAGACGGTTGTGCTTATAAGC
ATCCTCGATTTAATGATAGCAAAGAACCTCATTCGGGGTCTTATGCTGCG
CAAGTCAGGGAGAATGAAGATGGGCAGGGCATTCAGTTGGGGAACAAGAA
AAAGGTCGCCTTGGTCATTGGGTACTGCGGGACGGATTTTCAAGGCATGC
AGATGAATCCGGGTGCGGCCTCCATCGAAGCAGAGCTGGAAAAGGCCATG
TTTGAGGCGGGTTGTATTAAAAAAGAAAATTTTGGGAATTTGCAGAAAAT
TGGGTGGTCTCGGGCGGGAAGAACTGATAAGGGTGTTCATGCTGCAGCGC
AGATTGTGGGATATTACCCGTGGCTCCGCCACTCCCACCCTTATCGAAGA
CGCCTACGAGGACGTGATGCTCACCTTGCCCATGGCCCCGTCCGACGGCC
TCTTCCTCGACAAAGCCTTTTTTGAACAGTACAACAACCGCGCGACGCAG
ATCGGCTTGGCTGCGTCCCTGGACTGGGAAGATGACAGTGGAGGTGGTGA
GGAAGGGAGGGAAAGACGGGCGGCAGGGAAGAGGGGGAGGGAGAGAGAGT
GGAAATAAACAGGGAAGGGAGAAGGGATAGAGTGGTGCAGCATAACGGTG
GTGGGGCAGGCGTTTTTGTTGCATCAGATTCGGAAGATGGTGGCGGTGGC
AATTAAGAGATTGAAGCCTTATCGCGTGAGCCGACAAAAAATAGATTTAT
TAAAAAATACACTGAAGCGGTATCTGGGTACTCACAAATTTCACAACTTC
TCGATTCGCATGAGCTATCGGTCGGGGGCGGTTCAGCGATATATAATGGG
GGTGGAGGTATCGGAGCCGCCTCCTCCTCCGCCCTTTCTCCCGATGATCT
TGCGGACGCTTTCGAACGTACCCGCGATTCAATCAACGAAAAACTTCCTC
CTTCCATCCGTGTCCACGGTGTATTACGTGCAACGCGAGGGTTCAACGCT
AAAAATGATTGTACCAAACGTAGATATTGCTACTGGCTCCCCACTTTCCT
GCTGGCGGATGCTGAGGGTCGGGAAGAGAGAGAGGGAGGTATGGGTAGAG
GCCGCGGTGGTTGGGGAGGAGGAGGACGGGGGAGGGGAAGGGGAGGTAGG
GGACGGGGGAAATGGGGCGATGGTGGTGGTGGTCCAAAAGCCAACAAGCG
CAAAAGTGGAGGATCAGAGGAAGTTGGAGGAGAAGACGGTTGTGCTTATA
AGCATCCTCGATTTAATGATAGCAAAGAACCTCATTCGGGGTCTTATGCT
GCGCAAGTCAGGGAGAATGAAGATGGGCAGGGCATTCAGTTGGGGAACAA
GAAAAAGGTCGCCTTGGTCATTGGGTACTGCGGGACGGATTTTCAAGGCA
TGCAGATGAATCCGGGTGCGGCCTCCATCGAAGCAGAGCTGGAAAAGGCC
ATGTTTGAGGCGGGTTGTATTAAAAAAGAAAATTTTGGGAATTTGCAGAA
AATTGGGTGGTCTCGGGCGGGAAGAACTGATAAGGGTGTTCATGCTGCAG
CGCAGATTGTGGGAT back to top
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