jgi.p|Nanoce1779_2|599086, mRNA_7534 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|599086
Unique Name	mRNA_7534
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1173
Alignment location	scaffold_20:197715..198887 +

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Properties


Property Name	Value
TranscriptId	599172
Track	FilteredModels2
ProteinId	599086

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_20	supercontig	scaffold_20:197715..198887 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599086	gene_7534	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599086	mRNA_7534-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7534	CDS_7534	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_20:197715..198887+
coding sequence from alignment at scaffold_20:197715..198887+

mRNA sequence

>mRNA_7534 ID=mRNA_7534|Name=jgi.p|Nanoce1779_2|599086|organism=Nannochloropsis oceanica|type=mRNA|length=1173bp
CGAGCACTAACGGCATTTGTCGTTGCCTTCTGTTATTTTCATATGTCCAT
GGATTTTTACTTATCGTTGCTATCTTTCTCATCATTTTTTCCTGTCATCG
GCTAGGTGTGTATTCAAACATGCCATAACACACAAAATAAAGCCAATACC
ACGCAATTTTCAATGAAACTACATGCACACTCATTCCGACGCATCCACGC
ACGTCCACTCTCCTGGGTTCCTTTTGTTTGTCCGAGACTCTCATTTCTTT
CGCTGCTCTTATTGATTCTCCAGCTCCTGCTACTGTGCCTGCTGGGGATG
ACTAAAAGCACACATGTTCTCTCTCATTTGCTTTATCTACTCGCTCATGG
CCTGAATTCTTCTCCTATTACTGTGATCATGTTATTATTCTTTCGTGCAT
TTGCTCTTGTCATTTACCACTTTCCCACTCTGCAAACTCCCTTAACGATT
CTTCTTCCTTTCTTTCACTGGCTTTGCTTCCATTATTCTTGCGGCCTGAG
GTGGAAAAATGTGGAAGGCGTTTGGCTCCCAGCCAGCAAAGCCCCCCTCC
TTCCCTCCCTTTCTCCTTTATACCCTCCCTCGCTTCTTTTCTCGCTCCTC
TTAATTTTAAATTGATTGTGATAATTTAAATGGTTGTCGTAATCATAATT
ATATTATGATTGCACAGACAGGTCGTGAAGGTACCATTGCCTTTTTTTTT
CCCCACACACACTTTACAAATTGCACCAAGGAGCAATGAATGAAAGACAA
GACAAGATGTCTTCCCTTCCTCCTTTCACTTAAAAACATTCAAGAAGGGT
GTGTGTTGGTGGTGTGGATCGTCTGCTCTCTTAATTCCTCTCGTATCTTT
TCTGTTATCAGAGAATGATTGTATGAGTGCACATGGACAGCATCTACCCT
TCCCTCTTTTCTCTTTTTGTATCTCTTTTTTGTCCCCTTATCACTCTCCC
CTCATTTCTCTTTCTCTCGCTTACCAGCAAATCAAATCCTTCCCGTTGGT
CTATCTGTTTGCGCATCTTGCAATGTTAATCGTCTGTCTGTACACCCCTC
TCTCCCTTCCTGCCTCCTTCTAGTGCAAACTGCACTGGAAGAACGACGGA
TTCTGCCCATGCTGTCTAACTAAAGAAATCGTTATGTACAACAATAATCC
TCCCTCTTCCCCGCCCGCCCTTC

protein sequence of jgi.p|Nanoce1779_2|599086

>mRNA_7534-protein ID=mRNA_7534-protein|Name=jgi.p|Nanoce1779_2|599086|organism=Nannochloropsis oceanica|type=polypeptide|length=151bp
MKLHAHSFRRIHARPLSWVPFVCPRLSFLSLLLLILQLLLLCLLGMTKST
HVLSHLLYLLAHGLNSSPITVIMLLFFRAFALVIYHFPTLQTPLTILLPF
FHWLCFHYSCGLRWKNVEGVWLPASKAPLLPSLSPLYPPSLLFSLLLILN
*

mRNA from alignment at scaffold_20:197715..198887+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7534 ID=mRNA_7534|Name=jgi.p|Nanoce1779_2|599086|organism=Nannochloropsis oceanica|type=mRNA|length=1173bp|location=Sequence derived from alignment at scaffold_20:197715..198887+ (Nannochloropsis oceanica)
CGAGCACTAACGGCATTTGTCGTTGCCTTCTGTTATTTTCATATGTCCAT
GGATTTTTACTTATCGTTGCTATCTTTCTCATCATTTTTTCCTGTCATCG
GCTAGGTGTGTATTCAAACATGCCATAACACACAAAATAAAGCCAATACC
ACGCAATTTTCAATGAAACTACATGCACACTCATTCCGACGCATCCACGC
ACGTCCACTCTCCTGGGTTCCTTTTGTTTGTCCGAGACTCTCATTTCTTT
CGCTGCTCTTATTGATTCTCCAGCTCCTGCTACTGTGCCTGCTGGGGATG
ACTAAAAGCACACATGTTCTCTCTCATTTGCTTTATCTACTCGCTCATGG
CCTGAATTCTTCTCCTATTACTGTGATCATGTTATTATTCTTTCGTGCAT
TTGCTCTTGTCATTTACCACTTTCCCACTCTGCAAACTCCCTTAACGATT
CTTCTTCCTTTCTTTCACTGGCTTTGCTTCCATTATTCTTGCGGCCTGAG
GTGGAAAAATGTGGAAGGCGTTTGGCTCCCAGCCAGCAAAGCCCCCCTCC
TTCCCTCCCTTTCTCCTTTATACCCTCCCTCGCTTCTTTTCTCGCTCCTC
TTAATTTTAAATTGATTGTGATAATTTAAATGGTTGTCGTAATCATAATT
ATATTATGATTGCACAGACAGGTCGTGAAGGTACCATTGCCTTTTTTTTT
CCCCACACACACTTTACAAATTGCACCAAGGAGCAATGAATGAAAGACAA
GACAAGATGTCTTCCCTTCCTCCTTTCACTTAAAAACATTCAAGAAGGGT
GTGTGTTGGTGGTGTGGATCGTCTGCTCTCTTAATTCCTCTCGTATCTTT
TCTGTTATCAGAGAATGATTGTATGAGTGCACATGGACAGCATCTACCCT
TCCCTCTTTTCTCTTTTTGTATCTCTTTTTTGTCCCCTTATCACTCTCCC
CTCATTTCTCTTTCTCTCGCTTACCAGCAAATCAAATCCTTCCCGTTGGT
CTATCTGTTTGCGCATCTTGCAATGTTAATCGTCTGTCTGTACACCCCTC
TCTCCCTTCCTGCCTCCTTCTAGTGCAAACTGCACTGGAAGAACGACGGA
TTCTGCCCATGCTGTCTAACTAAAGAAATCGTTATGTACAACAATAATCC
TCCCTCTTCCCCGCCCGCCCTTC

Coding sequence (CDS) from alignment at scaffold_20:197715..198887+

>mRNA_7534 ID=mRNA_7534|Name=jgi.p|Nanoce1779_2|599086|organism=Nannochloropsis oceanica|type=CDS|length=453bp|location=Sequence derived from alignment at scaffold_20:197715..198887+ (Nannochloropsis oceanica)
ATGAAACTACATGCACACTCATTCCGACGCATCCACGCACGTCCACTCTC
CTGGGTTCCTTTTGTTTGTCCGAGACTCTCATTTCTTTCGCTGCTCTTAT
TGATTCTCCAGCTCCTGCTACTGTGCCTGCTGGGGATGACTAAAAGCACA
CATGTTCTCTCTCATTTGCTTTATCTACTCGCTCATGGCCTGAATTCTTC
TCCTATTACTGTGATCATGTTATTATTCTTTCGTGCATTTGCTCTTGTCA
TTTACCACTTTCCCACTCTGCAAACTCCCTTAACGATTCTTCTTCCTTTC
TTTCACTGGCTTTGCTTCCATTATTCTTGCGGCCTGAGGTGGAAAAATGT
GGAAGGCGTTTGGCTCCCAGCCAGCAAAGCCCCCCTCCTTCCCTCCCTTT
CTCCTTTATACCCTCCCTCGCTTCTTTTCTCGCTCCTCTTAATTTTAAAT
TGA

Synonyms

Publications