jgi.p|Nanoce1779_2|672812, mRNA_7532 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|672812
Unique Name	mRNA_7532
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1014
Alignment location	scaffold_20:193109..194337 -

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Properties


Property Name	Value
TranscriptId	672898
Track	FilteredModels2
ProteinId	672812

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_20	supercontig	scaffold_20:193109..194337 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|672812	gene_7532	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|672812	mRNA_7532-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7532	CDS_7532	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_20:193109..194337-
coding sequence from alignment at scaffold_20:193109..194337-

mRNA sequence

>mRNA_7532 ID=mRNA_7532|Name=jgi.p|Nanoce1779_2|672812|organism=Nannochloropsis oceanica|type=mRNA|length=1014bp
AGCACAGAGAGTTCCGAAGCCCACTGCCGACCTCCTCTTCATCCTCCCCA
CTACCATGACGCCCCCTCCTTCCCCTACTCCTTCACCCTGTTTTCCTGCT
GCAGACCACAACCAACCTCGAGAAGACGTGCAAATTAATCCTGATGATGA
GGATACCATCTATGAGACGGTGCTTTTTCCGCAGAACCACACGCTCCACA
TTCTCCTCTACGAGGACGTGGTCAATGCTTCGGAGATTCGCACCGCACTG
CTCGACGGTACCCTGCCTGAATTCGCTCTCATTAAACCTAGCATGGTTCT
ATCCTCCTTCCACATCCTCCTCGCCGCCTCCACCGCCCTCCTCCAACTAG
CCCAGGGCACCATGCGTTTGAAGACTCTCCACGCCGAGCTCCTGTATTCT
CTCTCCCCCACCACTAATATCTCAGAAGCCTTCCGTGTTTTTGGTGGTGG
TGCTTCTGCTGACAGCAGCAGTAGCAACTCCTCTACTCCTCTCCTCTTAG
CGTTTATTGATTCTTCCAAGGAAGCAATAAGAGAGAAAATCATCCCTCTC
GTGCAGGGCAAGGCAGTAGCAGCGGAAAAAGTGATGGCTTATTTGAACGC
ACGGCCCTTGTCGAAAGAGCGGATAGAGAGGTTTCGAAAAGTGTTCAAGA
TAGAAGAGGGAAAGAGGGAAGGAGGGAAGGGTGGAGGGGGAGGGAGGAGG
AAGCAGAAAGGAAGTGAGAGTATTGTGGTGGAGGGAGGAGGAGGGGCAGG
AAGAAGGGCAGGGAGGGATGAGGCGGAGGAGTTGGAGCATGCAGTCGTGT
CCAGGATAGCGGCGAAGCGTCTTCTGTGATTTCAAGAAGAGATGTATTAC
GTTCCCTTCCTCCCTTCCTCCCTCCCTGCCTCCGAGGCAAGGGAGCGACC
TGTCTCCTGTAAAGAGATAACGGCGATTGAGAACTGCTGATAGTTTGGTC
CCAGACAATCGAATAGAAGTATTTGTTTGAAAATTTAAGGAATGAAAGTA
AAATGTGAAAGGTG

protein sequence of jgi.p|Nanoce1779_2|672812

>mRNA_7532-protein ID=mRNA_7532-protein|Name=jgi.p|Nanoce1779_2|672812|organism=Nannochloropsis oceanica|type=polypeptide|length=258bp
MTPPPSPTPSPCFPAADHNQPREDVQINPDDEDTIYETVLFPQNHTLHIL
LYEDVVNASEIRTALLDGTLPEFALIKPSMVLSSFHILLAASTALLQLAQ
GTMRLKTLHAELLYSLSPTTNISEAFRVFGGGASADSSSSNSSTPLLLAF
IDSSKEAIREKIIPLVQGKAVAAEKVMAYLNARPLSKERIERFRKVFKIE
EGKREGGKGGGGGRRKQKGSESIVVEGGGGAGRRAGRDEAEELEHAVVSR
IAAKRLL*

mRNA from alignment at scaffold_20:193109..194337-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7532 ID=mRNA_7532|Name=jgi.p|Nanoce1779_2|672812|organism=Nannochloropsis oceanica|type=mRNA|length=1229bp|location=Sequence derived from alignment at scaffold_20:193109..194337- (Nannochloropsis oceanica)
AGCACAGAGAGTTCCGAAGCCCACTGCCGACCTCCTCTTCATCCTCCCCA
CTACCATGACGCCCCCTCCTTCCCCTACTCCTTCACCCTGTTTTCCTGCT
GCAGACCACAACCAACCTCGAGAAGACGTGCAAATTAATCCTGATGATGA
GGATACCATCTATGAGACGGTGCTTTTTCCGCAGAACCACACGGTACGTA
GGTCGAAAAAGAGAGACATTTGCGCAGCGGCGGTGTGTGGGGATCAGGAA
AGCAGGAACGAAGACACGGTACCACCCCGTCGGCGTTTCGTTATGTCAAG
AGAATGGACATAAGATCAATTATACGCAAAACAAAGCGCCTGAGTGCAGA
CGTCACCGCACATTCAAATTAATTTACCCAAACCTCACCTCTTCTTTCAC
TCTCACAGCTCCACATTCTCCTCTACGAGGACGTGGTCAATGCTTCGGAG
ATTCGCACCGCACTGCTCGACGGTACCCTGCCTGAATTCGCTCTCATTAA
ACCTAGCATGGTTCTATCCTCCTTCCACATCCTCCTCGCCGCCTCCACCG
CCCTCCTCCAACTAGCCCAGGGCACCATGCGTTTGAAGACTCTCCACGCC
GAGCTCCTGTATTCTCTCTCCCCCACCACTAATATCTCAGAAGCCTTCCG
TGTTTTTGGTGGTGGTGCTTCTGCTGACAGCAGCAGTAGCAACTCCTCTA
CTCCTCTCCTCTTAGCGTTTATTGATTCTTCCAAGGAAGCAATAAGAGAG
AAAATCATCCCTCTCGTGCAGGGCAAGGCAGTAGCAGCGGAAAAAGTGAT
GGCTTATTTGAACGCACGGCCCTTGTCGAAAGAGCGGATAGAGAGGTTTC
GAAAAGTGTTCAAGATAGAAGAGGGAAAGAGGGAAGGAGGGAAGGGTGGA
GGGGGAGGGAGGAGGAAGCAGAAAGGAAGTGAGAGTATTGTGGTGGAGGG
AGGAGGAGGGGCAGGAAGAAGGGCAGGGAGGGATGAGGCGGAGGAGTTGG
AGCATGCAGTCGTGTCCAGGATAGCGGCGAAGCGTCTTCTGTGATTTCAA
GAAGAGATGTATTACGTTCCCTTCCTCCCTTCCTCCCTCCCTGCCTCCGA
GGCAAGGGAGCGACCTGTCTCCTGTAAAGAGATAACGGCGATTGAGAACT
GCTGATAGTTTGGTCCCAGACAATCGAATAGAAGTATTTGTTTGAAAATT
TAAGGAATGAAAGTAAAATGTGAAAGGTG

Coding sequence (CDS) from alignment at scaffold_20:193109..194337-

>mRNA_7532 ID=mRNA_7532|Name=jgi.p|Nanoce1779_2|672812|organism=Nannochloropsis oceanica|type=CDS|length=1548bp|location=Sequence derived from alignment at scaffold_20:193109..194337- (Nannochloropsis oceanica)
CTCCACATTCTCCTCTACGAGGACGTGGTCAATGCTTCGGAGATTCGCAC
CGCACTGCTCGACGGTACCCTGCCTGAATTCGCTCTCATTAAACCTAGCA
TGGTTCTATCCTCCTTCCACATCCTCCTCGCCGCCTCCACCGCCCTCCTC
CAACTAGCCCAGGGCACCATGCGTTTGAAGACTCTCCACGCCGAGCTCCT
GTATTCTCTCTCCCCCACCACTAATATCTCAGAAGCCTTCCGTGTTTTTG
GTGGTGGTGCTTCTGCTGACAGCAGCAGTAGCAACTCCTCTACTCCTCTC
CTCTTAGCGTTTATTGATTCTTCCAAGGAAGCAATAAGAGAGAAAATCAT
CCCTCTCGTGCAGGGCAAGGCAGTAGCAGCGGAAAAAGTGATGGCTTATT
TGAACGCACGGCCCTTGTCGAAAGAGCGGATAGAGAGGTTTCGAAAAGTG
TTCAAGATAGAAGAGGGAAAGAGGGAAGGAGGGAAGGGTGGAGGGGGAGG
GAGGAGGAAGCAGAAAGGAAGTGAGAGTATTGTGGTGGAGGGAGGAGGAG
GGGCAGGAAGAAGGGCAGGGAGGGATGAGGCGGAGGAGTTGGAGCATGCA
GTCGTGTCCAGGATAGCGGCGAAGCGTCTTCTGTGAATGACGCCCCCTCC
TTCCCCTACTCCTTCACCCTGTTTTCCTGCTGCAGACCACAACCAACCTC
GAGAAGACGTGCAAATTAATCCTGATGATGAGGATACCATCTATGAGACG
GTGCTTTTTCCGCAGAACCACACGCTCCACATTCTCCTCTACGAGGACGT
GGTCAATGCTTCGGAGATTCGCACCGCACTGCTCGACGGTACCCTGCCTG
AATTCGCTCTCATTAAACCTAGCATGGTTCTATCCTCCTTCCACATCCTC
CTCGCCGCCTCCACCGCCCTCCTCCAACTAGCCCAGGGCACCATGCGTTT
GAAGACTCTCCACGCCGAGCTCCTGTATTCTCTCTCCCCCACCACTAATA
TCTCAGAAGCCTTCCGTGTTTTTGGTGGTGGTGCTTCTGCTGACAGCAGC
AGTAGCAACTCCTCTACTCCTCTCCTCTTAGCGTTTATTGATTCTTCCAA
GGAAGCAATAAGAGAGAAAATCATCCCTCTCGTGCAGGGCAAGGCAGTAG
CAGCGGAAAAAGTGATGGCTTATTTGAACGCACGGCCCTTGTCGAAAGAG
CGGATAGAGAGGTTTCGAAAAGTGTTCAAGATAGAAGAGGGAAAGAGGGA
AGGAGGGAAGGGTGGAGGGGGAGGGAGGAGGAAGCAGAAAGGAAGTGAGA
GTATTGTGGTGGAGGGAGGAGGAGGGGCAGGAAGAAGGGCAGGGAGGGAT
GAGGCGGAGGAGTTGGAGCATGCAGTCGTGTCCAGGATAGCGGCGAAGCG
TCTTCTGTGAATGACGCCCCCTCCTTCCCCTACTCCTTCACCCTGTTTTC
CTGCTGCAGACCACAACCAACCTCGAGAAGACGTGCAAATTAATCCTGAT
GATGAGGATACCATCTATGAGACGGTGCTTTTTCCGCAGAACCACACG

Synonyms

Publications