jgi.p|Nanoce1779_2|599076, mRNA_7530 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|599076
Unique Name	mRNA_7530
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1345
Alignment location	scaffold_20:189541..191436 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	599162
Track	FilteredModels2
ProteinId	599076

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_20	supercontig	scaffold_20:189541..191436 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599076	gene_7530	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599076	mRNA_7530-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7530	CDS_7530	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_20:189541..191436+
coding sequence from alignment at scaffold_20:189541..191436+

mRNA sequence

>mRNA_7530 ID=mRNA_7530|Name=jgi.p|Nanoce1779_2|599076|organism=Nannochloropsis oceanica|type=mRNA|length=1345bp
ACAGGAACTTCTCTCGCACTTGGACATTCAAGAAGAAATGGTACTGGAAA
TACTAACACCGCGTGTGTGGGATCTCCTGAGCCCGGGCGGCAAGAACACT
CAGCAGGTCTTGCAAGGAGAACTTGACCGCATGATTGCCCGCTTCCCGGA
TGCCAAGCCCAAGGACCTGAAACGATTTTTGATGGGCTTCCACCAGAAAG
CGGACAAGGCGATTTCAGCATACGAGGCGCACTTGAAGTGGCGCGCCGAG
AACCTGCCCGTTACCAAAGAATCATGCCTGACCGAGCTGCAGAAGGGTCG
CTTCTACTTCCATGGGTCCGACAAAAAGGGTCGGCCCGTGGCTTACTACT
CGCTGGCGTGCCATGACCCCAAACATCGAGATCTTGCGGAAATCATGCGG
ATGATGACATATCAGGTCGAAAAGGCCTTGTCGGAAATGCCGGACAATGT
AAAGGGCTTTACCATCATCTGGGACACGCGCAACACGGGCATGAAGAACA
CCGACACGGAATTCCTCCGGGAATTTTTAAATTTCTTTCGTGCGCAGTAC
CCCGAGGTACTGGCTCAGCTGGTTATTGCTCCAGTGGGATTGCTGCAGCG
GACGATGTGGAATGCATTTGCGCGGTTCTTGGACGAACGCCGGGCGTCTC
GTATTCGGATGGTGGCCACGATGGAGGGGTTGAGGGAGTATGTGGACACA
GAGGAACTATTGGCGAGCTGTGGGGGGAAGAACACGTGGGCATTTGATCC
GAGTGAGGTTTAGATTTCCTGAGGGGAGGAGGAAGGGCGATAGAATGTAA
GGCTTCAATGAGGACAGAGAAAGGAATATCCGAGTGTATGTCTTTGTGAA
TGTTTGCGGTGTTTACATATCATAATTTAACAGGTATATCGAAGAGTTGC
TGTGATTTAAACGAAAAAAATGGTTGTCGCCACGGTACAATACCTTTCTC
TCTCTGACTCAAATATTACTTCGGCAAGTTTGTAAAAAATTTCAGGTCGC
TACAAGACATATGTTTCTTGTTGACGGCTCTGATTATAATCACTGCTTGA
TCTTCATTTCCTTGCTGCCTTGTGCTGTTCGACACTGACGGCCAACCTCA
TCATACCTCCATACAGTGTCTGACAAAGAGCTCATAGAAAGCAAAAATGC
TGAAGTTGACACACGAACGAAGCCTTTCCACATTCTATCGTTTTTGTGCT
TGAGGTATTCTTGGGATCAAAATATCATTCTGGCGTTCGCTTTTGTTTTA
CCTTGGGTGCAAAGTAGAAAAGAAATGATGGAGGCTTGCACGAGTCGTGG
TGGCCAGGCCAAAGCGATCAGCCAGCAGTCACAATCCGCCACCCC

protein sequence of jgi.p|Nanoce1779_2|599076

>mRNA_7530-protein ID=mRNA_7530-protein|Name=jgi.p|Nanoce1779_2|599076|organism=Nannochloropsis oceanica|type=polypeptide|length=242bp
MVLEILTPRVWDLLSPGGKNTQQVLQGELDRMIARFPDAKPKDLKRFLMG
FHQKADKAISAYEAHLKWRAENLPVTKESCLTELQKGRFYFHGSDKKGRP
VAYYSLACHDPKHRDLAEIMRMMTYQVEKALSEMPDNVKGFTIIWDTRNT
GMKNTDTEFLREFLNFFRAQYPEVLAQLVIAPVGLLQRTMWNAFARFLDE
RRASRIRMVATMEGLREYVDTEELLASCGGKNTWAFDPSEV*

mRNA from alignment at scaffold_20:189541..191436+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7530 ID=mRNA_7530|Name=jgi.p|Nanoce1779_2|599076|organism=Nannochloropsis oceanica|type=mRNA|length=1896bp|location=Sequence derived from alignment at scaffold_20:189541..191436+ (Nannochloropsis oceanica)
ACAGGAACTTCTCTCGCACTTGGACATTCAAGAAGAAATGGTACTGGAAA
TACTAACACCGCGTGTGTGGGATCTCCTGAGCCCGGGCGGCAAGAACACT
CAGCAGGTCTTGCAAGGAGAACTTGACCGCATGATTGCCCGCTTCCCGGA
TGCCAAGCCCAAGGACCTGAAACGATTTTTGATGGGCTTCCACCAGAAAG
CGGACAAGGCGATTTCAGCATACGAGGCGCACTTGAAGTGGTGAGTGTTT
TGCTGCTTGAAATGATGTTGTCATGGTATGGCACAGGGAAAGGAGAGAGA
GACGAGAGAGGGATAACAAAGAATTATCTCCACACCCTTTTCCCTCCCCA
CTTTCCAAGGCGCGCCGAGAACCTGCCCGTTACCAAAGAATCATGCCTGA
CCGAGCTGCAGAAGGGTCGCTTCTACTTCCATGGGTCCGACAAAAAGGGT
CGGCCCGTGGCTTACTACTCGCTGGCGTGCCATGACCCCAAACATCGAGA
TCTTGCGGAAATCATGCGGATGATGACATATCAGGTAGTCTTACTCATAA
AATTCTTTTCATCATTTTGCTTCCTCTACCCCTTTTACCCTTTGCCTCGT
TCATTGCCTCTTGCTCTTGCTTGGGCCACAAGCAAAAGAGAACTTCTTAT
TCCTCCCTCCATTCCCCACTGACTAATTCCCTTCTTTCTCCCTCCACGCC
ACAGGTCGAAAAGGCCTTGTCGGAAATGCCGGACAATGTAAAGGGCTTTA
CCATCATCTGGGACACGCGCAACACGGGCATGAAGGTAGGGATAGTATGG
GGAAAGGAAAGGGAGGAAAGGCCGTTTACCTACACTCACACACTCTCCGC
TAAATTCACTGAAAACAGAACACCGACACGGAATTCCTCCGGGAATTTTT
AAATTTCTTTCGTGCGCAGTACCCCGAGGTACTGGCTCAGCTGGTTATTG
CTCCAGTGGGATTGCTGCAGCGGACGATGTGGAATGCATTTGCGCGGTTC
TTGGACGAACGCCGGGCGTCTCGTATTCGGATGGTGGCCACGATGGAGGG
GTTGAGGGAGTATGTGGACACAGAGGAACTATTGGCGAGCTGTGGGGGGA
AGAACACGTGGGCATTTGATCCGAGTGAGGTTTAGATTTCCTGAGGGGAG
GAGGAAGGGCGATAGAATGTAAGGCTTCAATGAGGACAGAGAAAGGAATA
TCCGAGTGTATGTCTTTGTGAATGTTTGCGGTGTTTACATATCATAATTT
AACAGGTATATCGAAGAGTTGCTGTGATTTAAACGAAAAAAATGGTTGTC
GCCACGGTACAATACCTTTCTCTCTCTGACTCAAATATTACTTCGGCAAG
TTTGTAAAAAATTTCAGGTCGCTACAAGACATATGTTTCTTGTTGACGGC
TCTGATTATAATCACTGCTTGATCTTCATTTCCTTGCTGCCTTGTGCTGT
TCGACACTGACGGCCAACCTCATCATACCTCCATACAGTGTCTGACAAAG
AGCTCATAGAAAGCAAAAATGCTGAAGTTGACACACGAACGAAGCCTTTC
CACATTCTATCGTTTTTGTGCTTGAGGTATTCTTGGGATCAAAATATCAT
TCTGGCGTTCGCTTTTGTTTTACCTTGGGTGCAAAGTAGAAAAGAAATGA
TGGTAAGTTCGCGACGGACAGAAATCGATTAACACTTTTGATGAAGAACA
GACACAACGGCAACGGCTGAAGCTGCGGCTTCGTCATGATGACTGACCGG
CGACCAAATGCGAACCTTCTGCATCGCCCACATCAAACACAGCCCACTCA
CCAGCAAACTTCCCTCTCACTGCCGTCACAGGAGGCTTGCACGAGTCGTG
GTGGCCAGGCCAAAGCGATCAGCCAGCAGTCACAATCCGCCACCCC

Coding sequence (CDS) from alignment at scaffold_20:189541..191436+

>mRNA_7530 ID=mRNA_7530|Name=jgi.p|Nanoce1779_2|599076|organism=Nannochloropsis oceanica|type=CDS|length=2904bp|location=Sequence derived from alignment at scaffold_20:189541..191436+ (Nannochloropsis oceanica)
ATGGTACTGGAAATACTAACACCGCGTGTGTGGGATCTCCTGAGCCCGGG
CGGCAAGAACACTCAGCAGGTCTTGCAAGGAGAACTTGACCGCATGATTG
CCCGCTTCCCGGATGCCAAGCCCAAGGACCTGAAACGATTTTTGATGGGC
TTCCACCAGAAAGCGGACAAGGCGATTTCAGCATACGAGGCGCACTTGAA
GTGGCGCGCCGAGAACCTGCCCGTTACCAAAGAATCATGCCTGACCGAGC
TGCAGAAGGGTCGCTTCTACTTCCATGGGTCCGACAAAAAGGGTCGGCCC
GTGGCTTACTACTCGCTGGCGTGCCATGACCCCAAACATCGAGATCTTGC
GGAAATCATGCGGATGATGACATATCAGGTCGAAAAGGCCTTGTCGGAAA
TGCCGGACAATGTAAAGGGCTTTACCATCATCTGGGACACGCGCAACACG
GGCATGAAGAACACCGACACGGAATTCCTCCGGGAATTTTTAAATTTCTT
TCGTGCGCAGTACCCCGAGGTACTGGCTCAGCTGGTTATTGCTCCAGTGG
GATTGCTGCAGCGGACGATGTGGAATGCATTTGCGCGGTTCTTGGACGAA
CGCCGGGCGTCTCGTATTCGGATGGTGGCCACGATGGAGGGGTTGAGGGA
GTATGTGGACACAGAGGAACTATTGGCGAGCTGTGGGGGGAAGAACACGT
GGGCATTTGATCCGAGTGAGGTTTAGATGGTACTGGAAATACTAACACCG
CGTGTGTGGGATCTCCTGAGCCCGGGCGGCAAGAACACTCAGCAGGTCTT
GCAAGGAGAACTTGACCGCATGATTGCCCGCTTCCCGGATGCCAAGCCCA
AGGACCTGAAACGATTTTTGATGGGCTTCCACCAGAAAGCGGACAAGGCG
ATTTCAGCATACGAGGCGCACTTGAAGTGGCGCGCCGAGAACCTGCCCGT
TACCAAAGAATCATGCCTGACCGAGCTGCAGAAGGGTCGCTTCTACTTCC
ATGGGTCCGACAAAAAGGGTCGGCCCGTGGCTTACTACTCGCTGGCGTGC
CATGACCCCAAACATCGAGATCTTGCGGAAATCATGCGGATGATGACATA
TCAGGTCGAAAAGGCCTTGTCGGAAATGCCGGACAATGTAAAGGGCTTTA
CCATCATCTGGGACACGCGCAACACGGGCATGAAGAACACCGACACGGAA
TTCCTCCGGGAATTTTTAAATTTCTTTCGTGCGCAGTACCCCGAGGTACT
GGCTCAGCTGGTTATTGCTCCAGTGGGATTGCTGCAGCGGACGATGTGGA
ATGCATTTGCGCGGTTCTTGGACGAACGCCGGGCGTCTCGTATTCGGATG
GTGGCCACGATGGAGGGGTTGAGGGAGTATGTGGACACAGAGGAACTATT
GGCGAGCTGTGGGGGGAAGAACACGTGGGCATTTGATCCGAGTGAGGTTT
AGATGGTACTGGAAATACTAACACCGCGTGTGTGGGATCTCCTGAGCCCG
GGCGGCAAGAACACTCAGCAGGTCTTGCAAGGAGAACTTGACCGCATGAT
TGCCCGCTTCCCGGATGCCAAGCCCAAGGACCTGAAACGATTTTTGATGG
GCTTCCACCAGAAAGCGGACAAGGCGATTTCAGCATACGAGGCGCACTTG
AAGTGGCGCGCCGAGAACCTGCCCGTTACCAAAGAATCATGCCTGACCGA
GCTGCAGAAGGGTCGCTTCTACTTCCATGGGTCCGACAAAAAGGGTCGGC
CCGTGGCTTACTACTCGCTGGCGTGCCATGACCCCAAACATCGAGATCTT
GCGGAAATCATGCGGATGATGACATATCAGGTCGAAAAGGCCTTGTCGGA
AATGCCGGACAATGTAAAGGGCTTTACCATCATCTGGGACACGCGCAACA
CGGGCATGAAGAACACCGACACGGAATTCCTCCGGGAATTTTTAAATTTC
TTTCGTGCGCAGTACCCCGAGGTACTGGCTCAGCTGGTTATTGCTCCAGT
GGGATTGCTGCAGCGGACGATGTGGAATGCATTTGCGCGGTTCTTGGACG
AACGCCGGGCGTCTCGTATTCGGATGGTGGCCACGATGGAGGGGTTGAGG
GAGTATGTGGACACAGAGGAACTATTGGCGAGCTGTGGGGGGAAGAACAC
GTGGGCATTTGATCCGAGTGAGGTTTAGATGGTACTGGAAATACTAACAC
CGCGTGTGTGGGATCTCCTGAGCCCGGGCGGCAAGAACACTCAGCAGGTC
TTGCAAGGAGAACTTGACCGCATGATTGCCCGCTTCCCGGATGCCAAGCC
CAAGGACCTGAAACGATTTTTGATGGGCTTCCACCAGAAAGCGGACAAGG
CGATTTCAGCATACGAGGCGCACTTGAAGTGGCGCGCCGAGAACCTGCCC
GTTACCAAAGAATCATGCCTGACCGAGCTGCAGAAGGGTCGCTTCTACTT
CCATGGGTCCGACAAAAAGGGTCGGCCCGTGGCTTACTACTCGCTGGCGT
GCCATGACCCCAAACATCGAGATCTTGCGGAAATCATGCGGATGATGACA
TATCAGGTCGAAAAGGCCTTGTCGGAAATGCCGGACAATGTAAAGGGCTT
TACCATCATCTGGGACACGCGCAACACGGGCATGAAGAACACCGACACGG
AATTCCTCCGGGAATTTTTAAATTTCTTTCGTGCGCAGTACCCCGAGGTA
CTGGCTCAGCTGGTTATTGCTCCAGTGGGATTGCTGCAGCGGACGATGTG
GAATGCATTTGCGCGGTTCTTGGACGAACGCCGGGCGTCTCGTATTCGGA
TGGTGGCCACGATGGAGGGGTTGAGGGAGTATGTGGACACAGAGGAACTA
TTGGCGAGCTGTGGGGGGAAGAACACGTGGGCATTTGATCCGAGTGAGGT
TTAG

Synonyms

Publications