jgi.p|Nanoce1779_2|574020, mRNA_753 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574020
Unique Name	mRNA_753
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1018
Alignment location	scaffold_2:356842..358169 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	574106
Track	FilteredModels2
ProteinId	574020

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:356842..358169 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574020	gene_753	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574020	mRNA_753-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_753	CDS_753	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:356842..358169+
coding sequence from alignment at scaffold_2:356842..358169+

mRNA sequence

>mRNA_753 ID=mRNA_753|Name=jgi.p|Nanoce1779_2|574020|organism=Nannochloropsis oceanica|type=mRNA|length=1018bp
ACAGTGCACTCGTTCCACGCACAGGTAGACAAGGAGCGAATGCGGGTGCT
GGCTGCCCTGGCGGGCTTCGTGCTTTTTGCAGTGGCAGTGGTACCACCCT
TCACACAAGGGTACATGTTTGGCGCCTCCGCCGGCACCTGCCAAACGACT
ATGTCCTTGGATGAGCCCACGCGCAAGGTCTTGATCACGGGAGCTGCCGG
TCGCACAGGTGCTTTGGTTTTTAAGAAACTGCAGGCTAAGACTGACTTTC
AACCTGTCGGCCTTGTCCGTTCCCAAAAATCAGCGGCCAAGCTCCGCAAA
GCTGCGGGGGCCACTGATGAACAAATCGTGATTGGCGATGTCATGGACTC
CATTGCCCTAGGCAAGGTATTGGAGGGCTGCGACTCTCTTATTTTGTGCA
CAAGCGCCACGCCCAAAATTTTGTTTGGTAGTATTTTGAAAATTTTGATT
AAAAAACTCTTGCGAAGGACTCCCGGCCGACCTGCGTTTAAATTCCCCCC
TGGCGGAGAGCCGGAGGAGGTCGATTGGATTGGCGCCAAGAATCAGATCG
ATGCCGCGGTGGCTGCTGGTGTGAAGCATTTTGTGTTCTTAGGGTCCATG
GGGGGAACGCAGCCGGACAACTTTTTGAACTCAATTGGGAAGAGGGAAGA
CGGAACGGGGGGGGATATTCTGTTGTGGAAACGCAAGGCCGAGAAGTATT
TGATTGAGAAGGCGAAAGCACAGGGGATGGCGTATACAATCGTGCACCCG
GGAGGACTGTTAGACAAGCCGGGGGGACAACAGGCATTGGTCGTGGATGT
TGATGATGTGTTACTGCAGAGGACGACACGGTCAATCCCAAGGGAGGACG
TGGCCGAGGTGTGCGTGCAGGCGTTGTTGCAGCCGAAGGCGAAGAATGTG
GCGTTGGATGTGATTGCTGAAGCAGTCGGAGTCGGTGTCCCCACGACAGA
TTTTGATAGTCTTTTTGGGAGTTTAAAGGGGAGGAGTTGTGCATACGAGT
CGCCTTAGAAAAGGGGAG

protein sequence of jgi.p|Nanoce1779_2|574020

>mRNA_753-protein ID=mRNA_753-protein|Name=jgi.p|Nanoce1779_2|574020|organism=Nannochloropsis oceanica|type=polypeptide|length=323bp
MRVLAALAGFVLFAVAVVPPFTQGYMFGASAGTCQTTMSLDEPTRKVLIT
GAAGRTGALVFKKLQAKTDFQPVGLVRSQKSAAKLRKAAGATDEQIVIGD
VMDSIALGKVLEGCDSLILCTSATPKILFGSILKILIKKLLRRTPGRPAF
KFPPGGEPEEVDWIGAKNQIDAAVAAGVKHFVFLGSMGGTQPDNFLNSIG
KREDGTGGDILLWKRKAEKYLIEKAKAQGMAYTIVHPGGLLDKPGGQQAL
VVDVDDVLLQRTTRSIPREDVAEVCVQALLQPKAKNVALDVIAEAVGVGV
PTTDFDSLFGSLKGRSCAYESP*

mRNA from alignment at scaffold_2:356842..358169+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_753 ID=mRNA_753|Name=jgi.p|Nanoce1779_2|574020|organism=Nannochloropsis oceanica|type=mRNA|length=1328bp|location=Sequence derived from alignment at scaffold_2:356842..358169+ (Nannochloropsis oceanica)
ACAGTGCACTCGTTCCACGCACAGGTAGACAAGGAGCGAATGCGGGTGCT
GGCTGCCCTGGCGGGCTTCGTGCTTTTTGCAGGTACGTGATCGGACCCAG
TCCAACCTGGAGCTCAGGCGAGACCCTCTCCAAGACCCCTTTCGCTTTAG
CTTGTCTTTTTGTATCAGGAACAAATTTGTCGTGCATGTGTACGGAGTTG
TTGGCATGCTCCGTGCTAGTCTCGTGGTCCTTTGTCCCTTGAAACGACAA
TCAAGGCTTCTTCGGACCCCTGGCCCCAAGGTTTTTGTTGATGTTTGCGC
CGTGTGCTTTCCCCTTTTCTATATGAATCCCGCAGGTAGTTCCATGCCTT
ATCCCTTGTCTCCCATTCCCTCCCTATATAAATATCCCTCAGTGGCAGTG
GTACCACCCTTCACACAAGGGTACATGTTTGGCGCCTCCGCCGGCACCTG
CCAAACGACTATGTCCTTGGATGAGCCCACGCGCAAGGTCTTGATCACGG
GAGCTGCCGGTCGCACAGGTGCTTTGGTTTTTAAGAAACTGCAGGCTAAG
ACTGACTTTCAACCTGTCGGCCTTGTCCGTTCCCAAAAATCAGCGGCCAA
GCTCCGCAAAGCTGCGGGGGCCACTGATGAACAAATCGTGATTGGCGATG
TCATGGACTCCATTGCCCTAGGCAAGGTATTGGAGGGCTGCGACTCTCTT
ATTTTGTGCACAAGCGCCACGCCCAAAATTTTGTTTGGTAGTATTTTGAA
AATTTTGATTAAAAAACTCTTGCGAAGGACTCCCGGCCGACCTGCGTTTA
AATTCCCCCCTGGCGGAGAGCCGGAGGAGGTCGATTGGATTGGCGCCAAG
AATCAGATCGATGCCGCGGTGGCTGCTGGTGTGAAGCATTTTGTGTTCTT
AGGGTCCATGGGGGGAACGCAGCCGGACAACTTTTTGAACTCAATTGGGA
AGAGGGAAGACGGAACGGGGGGGGATATTCTGTTGTGGAAACGCAAGGCC
GAGAAGTATTTGATTGAGAAGGCGAAAGCACAGGGGATGGCGTATACAAT
CGTGCACCCGGGAGGACTGTTAGACAAGCCGGGGGGACAACAGGCATTGG
TCGTGGATGTTGATGATGTGTTACTGCAGAGGACGACACGGTCAATCCCA
AGGGAGGACGTGGCCGAGGTGTGCGTGCAGGCGTTGTTGCAGCCGAAGGC
GAAGAATGTGGCGTTGGATGTGATTGCTGAAGCAGTCGGAGTCGGTGTCC
CCACGACAGATTTTGATAGTCTTTTTGGGAGTTTAAAGGGGAGGAGTTGT
GCATACGAGTCGCCTTAGAAAAGGGGAG

Coding sequence (CDS) from alignment at scaffold_2:356842..358169+

>mRNA_753 ID=mRNA_753|Name=jgi.p|Nanoce1779_2|574020|organism=Nannochloropsis oceanica|type=CDS|length=1938bp|location=Sequence derived from alignment at scaffold_2:356842..358169+ (Nannochloropsis oceanica)
ATGCGGGTGCTGGCTGCCCTGGCGGGCTTCGTGCTTTTTGCAGTGGCAGT
GGTACCACCCTTCACACAAGGGTACATGTTTGGCGCCTCCGCCGGCACCT
GCCAAACGACTATGTCCTTGGATGAGCCCACGCGCAAGGTCTTGATCACG
GGAGCTGCCGGTCGCACAGGTGCTTTGGTTTTTAAGAAACTGCAGGCTAA
GACTGACTTTCAACCTGTCGGCCTTGTCCGTTCCCAAAAATCAGCGGCCA
AGCTCCGCAAAGCTGCGGGGGCCACTGATGAACAAATCGTGATTGGCGAT
GTCATGGACTCCATTGCCCTAGGCAAGGTATTGGAGGGCTGCGACTCTCT
TATTTTGTGCACAAGCGCCACGCCCAAAATTTTGTTTGGTAGTATTTTGA
AAATTTTGATTAAAAAACTCTTGCGAAGGACTCCCGGCCGACCTGCGTTT
AAATTCCCCCCTGGCGGAGAGCCGGAGGAGGTCGATTGGATTGGCGCCAA
GAATCAGATCGATGCCGCGGTGGCTGCTGGTGTGAAGCATTTTGTGTTCT
TAGGGTCCATGGGGGGAACGCAGCCGGACAACTTTTTGAACTCAATTGGG
AAGAGGGAAGACGGAACGGGGGGGGATATTCTGTTGTGGAAACGCAAGGC
CGAGAAGTATTTGATTGAGAAGGCGAAAGCACAGGGGATGGCGTATACAA
TCGTGCACCCGGGAGGACTGTTAGACAAGCCGGGGGGACAACAGGCATTG
GTCGTGGATGTTGATGATGTGTTACTGCAGAGGACGACACGGTCAATCCC
AAGGGAGGACGTGGCCGAGGTGTGCGTGCAGGCGTTGTTGCAGCCGAAGG
CGAAGAATGTGGCGTTGGATGTGATTGCTGAAGCAGTCGGAGTCGGTGTC
CCCACGACAGATTTTGATAGTCTTTTTGGGAGTTTAAAGGGGAGGAGTTG
TGCATACGAGTCGCCTTAGATGCGGGTGCTGGCTGCCCTGGCGGGCTTCG
TGCTTTTTGCAGTGGCAGTGGTACCACCCTTCACACAAGGGTACATGTTT
GGCGCCTCCGCCGGCACCTGCCAAACGACTATGTCCTTGGATGAGCCCAC
GCGCAAGGTCTTGATCACGGGAGCTGCCGGTCGCACAGGTGCTTTGGTTT
TTAAGAAACTGCAGGCTAAGACTGACTTTCAACCTGTCGGCCTTGTCCGT
TCCCAAAAATCAGCGGCCAAGCTCCGCAAAGCTGCGGGGGCCACTGATGA
ACAAATCGTGATTGGCGATGTCATGGACTCCATTGCCCTAGGCAAGGTAT
TGGAGGGCTGCGACTCTCTTATTTTGTGCACAAGCGCCACGCCCAAAATT
TTGTTTGGTAGTATTTTGAAAATTTTGATTAAAAAACTCTTGCGAAGGAC
TCCCGGCCGACCTGCGTTTAAATTCCCCCCTGGCGGAGAGCCGGAGGAGG
TCGATTGGATTGGCGCCAAGAATCAGATCGATGCCGCGGTGGCTGCTGGT
GTGAAGCATTTTGTGTTCTTAGGGTCCATGGGGGGAACGCAGCCGGACAA
CTTTTTGAACTCAATTGGGAAGAGGGAAGACGGAACGGGGGGGGATATTC
TGTTGTGGAAACGCAAGGCCGAGAAGTATTTGATTGAGAAGGCGAAAGCA
CAGGGGATGGCGTATACAATCGTGCACCCGGGAGGACTGTTAGACAAGCC
GGGGGGACAACAGGCATTGGTCGTGGATGTTGATGATGTGTTACTGCAGA
GGACGACACGGTCAATCCCAAGGGAGGACGTGGCCGAGGTGTGCGTGCAG
GCGTTGTTGCAGCCGAAGGCGAAGAATGTGGCGTTGGATGTGATTGCTGA
AGCAGTCGGAGTCGGTGTCCCCACGACAGATTTTGATAGTCTTTTTGGGA
GTTTAAAGGGGAGGAGTTGTGCATACGAGTCGCCTTAG

Synonyms

Publications