jgi.p|Nanoce1779_2|599067, mRNA_7528 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|599067
Unique Name	mRNA_7528
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1768
Alignment location	scaffold_20:184616..186654 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	599153
Track	FilteredModels2
ProteinId	599067

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_20	supercontig	scaffold_20:184616..186654 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599067	gene_7528	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599067	mRNA_7528-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7528	CDS_7528	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_20:184616..186654-
coding sequence from alignment at scaffold_20:184616..186654-

mRNA sequence

>mRNA_7528 ID=mRNA_7528|Name=jgi.p|Nanoce1779_2|599067|organism=Nannochloropsis oceanica|type=mRNA|length=1768bp
ACAGATGCGGCGCTGAGGTGAAATGGAGGTGCGAGCAGAGATCTTGGAGG
CGCTGCATAATGCGGCGGCAGACGTAGACGAGTCCACCGATGAAGAAAAG
CTTGAAAAACTCCGCCTGAATGGCTTCTGTAATGATTTGGAAGCCCCCTT
ACCAGCTTCCTCCGCCCTCTCCTCCTCTGCCCACGCCACACCTAGCGTGG
CCCCAGCCTCCTGCACTCTCTTCATCATCGTCGCCGCCCTCGTCTCTGTC
GGGACCGTCCTAACGATTATCACCAAACTCATGACGATACCGATGGCTAA
TTACACTTCGGCTCTCACCCTTCAAACCGTCTTCGCCTTTATTCCTCTCA
CCTTCATCCACATTGGCTTCAAACACAAAATGGGCAAATTGCTCCGTGCA
GATTTCTTCTACCCCTGGAAGCCTGTCGTGATTATCTCCATCCTTTACGC
CCTCGGCCAGTTTCTCTTCATTTTTGGAACACAATTCACCAGCGGCCCAA
TACAAGTCATTATATCTCAATCAGCCATTCCATTTAGCATGGGCATTTCG
CATTTAATGCTTGGCTCGAACTACAGGAGAAGACATTACATAGGAGCCGT
ACTCGTCGTTCTCGGCATCATCCTCGCAGTCGGTGGCTCTCTTGCCAGCG
AACAAATCGATGCATTCGAAGCAGGATGGATTGTTGGCTACATACTCTCT
ATGGTGCCCCCGGTTATTTACACGGTCTACAGCGAGAGCCTCTTCAAAGA
GAGAGCTACCCCTCCTGACCCTGTCATTTTTACGGGGCTAATCTCCACCA
TTCAATTTTTCTTCCTCTGCCTTCTTGCTCCCATCTTTCCCTACCTCGAA
CAACCTCCATCTACCCTCTCTTCTCTCCTTCCCTCGCTCCTCGCGGGGGG
GAAGTGCTTGGTAGGGATAAATACATTGCCTTCGGACGACTGCTGGCCCC
TTGCTCCCTCCCTCGTCCTCACCTACAACATTTTAAATATTGTCTTACTC
TACCCCACGTTCGCCTTGCTTGACCGCGGGTCATCAAATGTCTTCTGGCT
CGCCTGCACACTGATTGTACCCTTTTCGGGATTTGCTTTCTCCCTTCCCG
TAATCCCCGACGCCCAACCAGTGACACTTGAGAACAGCCTCGCGCTCTTG
GTCATTGTGCTCGGCTTGGGGACCTACGGTTTCTCCACGAAAACGGCTGA
GGCGGGGTTAGCATACATAAGACGAGCTTTATCGGGGCAGAGAGCCATTG
CCAGCGATAGTGACAATTTGCTGACAAGGCTCGAGATGGTCTCTCTTCCT
TCGTCCTCCTCTTCCTCCTCGTCTTCCTCCTCCTCCTCCACCACGGCAAC
CGTCTCCATCATGTCCTCCTTCTCCTCCCTTCCTTCTCCACTCTCGCCCT
CAACGCCACAGGTACGCCAACGAGGGCCGAATGAAAAGAAGAAGGGAGAG
AATGTGGCCAGCACTTTGCCGTCTCCCTTCCTTCCCACCGGCGCCGGAAG
AGGATAGGGAGGAGAGAGAGAGAGAGAGCGAGAGAGGGCGAGAGAGAGAG
ATGTGGTTAGGGATGGACGATGAGGAGTGAAGGAGGAAAGAATACATTTT
GACGAGTAACAATGATTAATCTCTATCTCCGAGTATCCTGCAGAGGGCTG
TGTCGTGTCTGGCCCATACGCCTAGCAAGAAAACCCCAACCTTAGCCGAC
AACTCAAACTGTATGTAAACACCGATCCAAGAAAGAAAAGGGGCATTAGA
CATGATTGAATGAGTATC

protein sequence of jgi.p|Nanoce1779_2|599067

>mRNA_7528-protein ID=mRNA_7528-protein|Name=jgi.p|Nanoce1779_2|599067|organism=Nannochloropsis oceanica|type=polypeptide|length=495bp
MEVRAEILEALHNAAADVDESTDEEKLEKLRLNGFCNDLEAPLPASSALS
SSAHATPSVAPASCTLFIIVAALVSVGTVLTIITKLMTIPMANYTSALTL
QTVFAFIPLTFIHIGFKHKMGKLLRADFFYPWKPVVIISILYALGQFLFI
FGTQFTSGPIQVIISQSAIPFSMGISHLMLGSNYRRRHYIGAVLVVLGII
LAVGGSLASEQIDAFEAGWIVGYILSMVPPVIYTVYSESLFKERATPPDP
VIFTGLISTIQFFFLCLLAPIFPYLEQPPSTLSSLLPSLLAGGKCLVGIN
TLPSDDCWPLAPSLVLTYNILNIVLLYPTFALLDRGSSNVFWLACTLIVP
FSGFAFSLPVIPDAQPVTLENSLALLVIVLGLGTYGFSTKTAEAGLAYIR
RALSGQRAIASDSDNLLTRLEMVSLPSSSSSSSSSSSSSTTATVSIMSSF
SSLPSPLSPSTPQVRQRGPNEKKKGENVASTLPSPFLPTGAGRG*

mRNA from alignment at scaffold_20:184616..186654-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7528 ID=mRNA_7528|Name=jgi.p|Nanoce1779_2|599067|organism=Nannochloropsis oceanica|type=mRNA|length=2039bp|location=Sequence derived from alignment at scaffold_20:184616..186654- (Nannochloropsis oceanica)
ACAGATGCGGCGCTGAGGTGAAATGGAGGTGCGAGCAGAGATCTTGGAGG
CGCTGCATAATGCGGCGGCAGACGTAGACGAGGTAAGCAAGCAAAGACGA
CATGGGAAAATCGTGGCGGCGCGGGGTTGGACCTCATTATCCGCAGGACA
ACAGTGGAGCAATCTTGCAGGGGGGAGAAGGGGAGAAATCAAGGGAGGAA
GAATAAGGATAGAGGAGGGTGGGTCGTGACTTCATTAGATTTTGCGTGCG
TGCGCCTTATGCGACGCGTAGAAACCGATCGCGATCATCAGGTCCTCAAT
ATGACCCTCCCATTCCTCCAAACCCATACACACAAACACACCACACAACA
CAGTCCACCGATGAAGAAAAGCTTGAAAAACTCCGCCTGAATGGCTTCTG
TAATGATTTGGAAGCCCCCTTACCAGCTTCCTCCGCCCTCTCCTCCTCTG
CCCACGCCACACCTAGCGTGGCCCCAGCCTCCTGCACTCTCTTCATCATC
GTCGCCGCCCTCGTCTCTGTCGGGACCGTCCTAACGATTATCACCAAACT
CATGACGATACCGATGGCTAATTACACTTCGGCTCTCACCCTTCAAACCG
TCTTCGCCTTTATTCCTCTCACCTTCATCCACATTGGCTTCAAACACAAA
ATGGGCAAATTGCTCCGTGCAGATTTCTTCTACCCCTGGAAGCCTGTCGT
GATTATCTCCATCCTTTACGCCCTCGGCCAGTTTCTCTTCATTTTTGGAA
CACAATTCACCAGCGGCCCAATACAAGTCATTATATCTCAATCAGCCATT
CCATTTAGCATGGGCATTTCGCATTTAATGCTTGGCTCGAACTACAGGAG
AAGACATTACATAGGAGCCGTACTCGTCGTTCTCGGCATCATCCTCGCAG
TCGGTGGCTCTCTTGCCAGCGAACAAATCGATGCATTCGAAGCAGGATGG
ATTGTTGGCTACATACTCTCTATGGTGCCCCCGGTTATTTACACGGTCTA
CAGCGAGAGCCTCTTCAAAGAGAGAGCTACCCCTCCTGACCCTGTCATTT
TTACGGGGCTAATCTCCACCATTCAATTTTTCTTCCTCTGCCTTCTTGCT
CCCATCTTTCCCTACCTCGAACAACCTCCATCTACCCTCTCTTCTCTCCT
TCCCTCGCTCCTCGCGGGGGGGAAGTGCTTGGTAGGGATAAATACATTGC
CTTCGGACGACTGCTGGCCCCTTGCTCCCTCCCTCGTCCTCACCTACAAC
ATTTTAAATATTGTCTTACTCTACCCCACGTTCGCCTTGCTTGACCGCGG
GTCATCAAATGTCTTCTGGCTCGCCTGCACACTGATTGTACCCTTTTCGG
GATTTGCTTTCTCCCTTCCCGTAATCCCCGACGCCCAACCAGTGACACTT
GAGAACAGCCTCGCGCTCTTGGTCATTGTGCTCGGCTTGGGGACCTACGG
TTTCTCCACGAAAACGGCTGAGGCGGGGTTAGCATACATAAGACGAGCTT
TATCGGGGCAGAGAGCCATTGCCAGCGATAGTGACAATTTGCTGACAAGG
CTCGAGATGGTCTCTCTTCCTTCGTCCTCCTCTTCCTCCTCGTCTTCCTC
CTCCTCCTCCACCACGGCAACCGTCTCCATCATGTCCTCCTTCTCCTCCC
TTCCTTCTCCACTCTCGCCCTCAACGCCACAGGTACGCCAACGAGGGCCG
AATGAAAAGAAGAAGGGAGAGAATGTGGCCAGCACTTTGCCGTCTCCCTT
CCTTCCCACCGGCGCCGGAAGAGGATAGGGAGGAGAGAGAGAGAGAGAGC
GAGAGAGGGCGAGAGAGAGAGATGTGGTTAGGGATGGACGATGAGGAGTG
AAGGAGGAAAGAATACATTTTGACGAGTAACAATGATTAATCTCTATCTC
CGAGTATCCTGCAGAGGGCTGTGTCGTGTCTGGCCCATACGCCTAGCAAG
AAAACCCCAACCTTAGCCGACAACTCAAACTGTATGTAAACACCGATCCA
AGAAAGAAAAGGGGCATTAGACATGATTGAATGAGTATC

Coding sequence (CDS) from alignment at scaffold_20:184616..186654-

>mRNA_7528 ID=mRNA_7528|Name=jgi.p|Nanoce1779_2|599067|organism=Nannochloropsis oceanica|type=CDS|length=2970bp|location=Sequence derived from alignment at scaffold_20:184616..186654- (Nannochloropsis oceanica)
TCCACCGATGAAGAAAAGCTTGAAAAACTCCGCCTGAATGGCTTCTGTAA
TGATTTGGAAGCCCCCTTACCAGCTTCCTCCGCCCTCTCCTCCTCTGCCC
ACGCCACACCTAGCGTGGCCCCAGCCTCCTGCACTCTCTTCATCATCGTC
GCCGCCCTCGTCTCTGTCGGGACCGTCCTAACGATTATCACCAAACTCAT
GACGATACCGATGGCTAATTACACTTCGGCTCTCACCCTTCAAACCGTCT
TCGCCTTTATTCCTCTCACCTTCATCCACATTGGCTTCAAACACAAAATG
GGCAAATTGCTCCGTGCAGATTTCTTCTACCCCTGGAAGCCTGTCGTGAT
TATCTCCATCCTTTACGCCCTCGGCCAGTTTCTCTTCATTTTTGGAACAC
AATTCACCAGCGGCCCAATACAAGTCATTATATCTCAATCAGCCATTCCA
TTTAGCATGGGCATTTCGCATTTAATGCTTGGCTCGAACTACAGGAGAAG
ACATTACATAGGAGCCGTACTCGTCGTTCTCGGCATCATCCTCGCAGTCG
GTGGCTCTCTTGCCAGCGAACAAATCGATGCATTCGAAGCAGGATGGATT
GTTGGCTACATACTCTCTATGGTGCCCCCGGTTATTTACACGGTCTACAG
CGAGAGCCTCTTCAAAGAGAGAGCTACCCCTCCTGACCCTGTCATTTTTA
CGGGGCTAATCTCCACCATTCAATTTTTCTTCCTCTGCCTTCTTGCTCCC
ATCTTTCCCTACCTCGAACAACCTCCATCTACCCTCTCTTCTCTCCTTCC
CTCGCTCCTCGCGGGGGGGAAGTGCTTGGTAGGGATAAATACATTGCCTT
CGGACGACTGCTGGCCCCTTGCTCCCTCCCTCGTCCTCACCTACAACATT
TTAAATATTGTCTTACTCTACCCCACGTTCGCCTTGCTTGACCGCGGGTC
ATCAAATGTCTTCTGGCTCGCCTGCACACTGATTGTACCCTTTTCGGGAT
TTGCTTTCTCCCTTCCCGTAATCCCCGACGCCCAACCAGTGACACTTGAG
AACAGCCTCGCGCTCTTGGTCATTGTGCTCGGCTTGGGGACCTACGGTTT
CTCCACGAAAACGGCTGAGGCGGGGTTAGCATACATAAGACGAGCTTTAT
CGGGGCAGAGAGCCATTGCCAGCGATAGTGACAATTTGCTGACAAGGCTC
GAGATGGTCTCTCTTCCTTCGTCCTCCTCTTCCTCCTCGTCTTCCTCCTC
CTCCTCCACCACGGCAACCGTCTCCATCATGTCCTCCTTCTCCTCCCTTC
CTTCTCCACTCTCGCCCTCAACGCCACAGGTACGCCAACGAGGGCCGAAT
GAAAAGAAGAAGGGAGAGAATGTGGCCAGCACTTTGCCGTCTCCCTTCCT
TCCCACCGGCGCCGGAAGAGGATAGATGGAGGTGCGAGCAGAGATCTTGG
AGGCGCTGCATAATGCGGCGGCAGACGTAGACGAGTCCACCGATGAAGAA
AAGCTTGAAAAACTCCGCCTGAATGGCTTCTGTAATGATTTGGAAGCCCC
CTTACCAGCTTCCTCCGCCCTCTCCTCCTCTGCCCACGCCACACCTAGCG
TGGCCCCAGCCTCCTGCACTCTCTTCATCATCGTCGCCGCCCTCGTCTCT
GTCGGGACCGTCCTAACGATTATCACCAAACTCATGACGATACCGATGGC
TAATTACACTTCGGCTCTCACCCTTCAAACCGTCTTCGCCTTTATTCCTC
TCACCTTCATCCACATTGGCTTCAAACACAAAATGGGCAAATTGCTCCGT
GCAGATTTCTTCTACCCCTGGAAGCCTGTCGTGATTATCTCCATCCTTTA
CGCCCTCGGCCAGTTTCTCTTCATTTTTGGAACACAATTCACCAGCGGCC
CAATACAAGTCATTATATCTCAATCAGCCATTCCATTTAGCATGGGCATT
TCGCATTTAATGCTTGGCTCGAACTACAGGAGAAGACATTACATAGGAGC
CGTACTCGTCGTTCTCGGCATCATCCTCGCAGTCGGTGGCTCTCTTGCCA
GCGAACAAATCGATGCATTCGAAGCAGGATGGATTGTTGGCTACATACTC
TCTATGGTGCCCCCGGTTATTTACACGGTCTACAGCGAGAGCCTCTTCAA
AGAGAGAGCTACCCCTCCTGACCCTGTCATTTTTACGGGGCTAATCTCCA
CCATTCAATTTTTCTTCCTCTGCCTTCTTGCTCCCATCTTTCCCTACCTC
GAACAACCTCCATCTACCCTCTCTTCTCTCCTTCCCTCGCTCCTCGCGGG
GGGGAAGTGCTTGGTAGGGATAAATACATTGCCTTCGGACGACTGCTGGC
CCCTTGCTCCCTCCCTCGTCCTCACCTACAACATTTTAAATATTGTCTTA
CTCTACCCCACGTTCGCCTTGCTTGACCGCGGGTCATCAAATGTCTTCTG
GCTCGCCTGCACACTGATTGTACCCTTTTCGGGATTTGCTTTCTCCCTTC
CCGTAATCCCCGACGCCCAACCAGTGACACTTGAGAACAGCCTCGCGCTC
TTGGTCATTGTGCTCGGCTTGGGGACCTACGGTTTCTCCACGAAAACGGC
TGAGGCGGGGTTAGCATACATAAGACGAGCTTTATCGGGGCAGAGAGCCA
TTGCCAGCGATAGTGACAATTTGCTGACAAGGCTCGAGATGGTCTCTCTT
CCTTCGTCCTCCTCTTCCTCCTCGTCTTCCTCCTCCTCCTCCACCACGGC
AACCGTCTCCATCATGTCCTCCTTCTCCTCCCTTCCTTCTCCACTCTCGC
CCTCAACGCCACAGGTACGCCAACGAGGGCCGAATGAAAAGAAGAAGGGA
GAGAATGTGGCCAGCACTTTGCCGTCTCCCTTCCTTCCCACCGGCGCCGG
AAGAGGATAGATGGAGGTGCGAGCAGAGATCTTGGAGGCGCTGCATAATG
CGGCGGCAGACGTAGACGAG

Synonyms

Publications