jgi.p|Nanoce1779_2|672808, mRNA_7527 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|672808
Unique Name	mRNA_7527
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2448
Alignment location	scaffold_20:181941..184388 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	672894
Track	FilteredModels2
ProteinId	672808

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_20	supercontig	scaffold_20:181941..184388 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|672808	gene_7527	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|672808	mRNA_7527-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7527	CDS_7527	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_20:181941..184388+
coding sequence from alignment at scaffold_20:181941..184388+

mRNA sequence

>mRNA_7527 ID=mRNA_7527|Name=jgi.p|Nanoce1779_2|672808|organism=Nannochloropsis oceanica|type=mRNA|length=2448bp
TCTAGGACCTCACCTGTGTTTTGTACGAAGGAAAGGGGAAGATGTAGGGA
GGTCAGGGAGGAGATGGGAAGTACAAATACATGCAAGAACATCGACCTTG
CGTTCCTGGACGTCCAGCCTACTCATGCGTGACTATCAAGGACAAGCGTA
GAGCTAAAACCCTCGTGGGCAGGCACGCTTGCGAGTTGTGTGTTGGTTGC
CGTCAATCGCTGATTTGCTTCAAGCTTCGTTCCTTAAGCAAGAAAGCAGC
AGTACCTTTCTGACCCACCCTACACACCGCAGAGGCTACGCACATTCATG
GCTAGACCACCATACCTTGGCCTTCTTACCGCCCTGGCTGCGCTGCGCCT
CTTCATGTCTGTGTACATCGTGGCCGTGTTGACCTTCGCCTCCTCGCGTG
ACGCCATCGGCTATCCCTCTTCCAGCAGCACCACTTCTTCTACTCAATCC
TTTCCCTCGGTTCCATCTGATCTTCGTACATCCGATGCCTGGGGTCCCAT
TTCCACACCTGTCCCCCCCGAGGCTATCACACTCTTCAATGAAGCTGTCC
GGTCTTATGCGGGGCTGCGAGGCCAGGTGCTTGAACCCCTCTTGGAGCTC
ACCACCAGCACCCCTTTCTCTCTCTCCCTCAATTCGTCATCCTCATATTT
GATGGCACATATATACCGAGGTTCCATCCTTCTGTTGTCGACAGGTGTGC
TAAAAAATAGCCCACTTGTCCGAGAAAGCTATCACGCCGCTGCTGCCTTC
TTCATGGACCTCCCTCCCTCCCACCACCTTTCCCATGAGCAACAGCTGCG
CCACCAGCAGCACCAACAGCAACAGCAAGAGTACCCGTATTCAAGCCCAA
CAGCTCGTGAACGTTGGTATTATCTCGCGTTTCATGCCCTGTATTACCCG
CCCACTCCTGATTTCGCACTTGCCGCCATGTATTGGGAAGAGGTCTTAGC
AATGAACCCTCGGGAATTGTTGGCGGTAAGGAGTGTCCATGACGCGTACA
TTATTTTAGGGGATAGCGAGGGAATGAAGAGGAGCTTGGCCAGGGTGTTG
AGTCGATGGGACTTGGGGGAGGAAAGGGTGAATGGGAGGGAGGAAGCATT
GGAGGACGAGAAACGTTCGGAGCCCCAAAAGGAGAAGGAGGAGAAGGAGA
AGGAGGCGAAGGTGGAGAATGATTACCGTATGGTTCGAAGTATGTGGGCT
TTCGCCTTGGAAGAAACAGGCGATCTGAACCGTGCCGCCCTTGTAGCCCG
TCAAGTCCTGTCGGAAGACGCTACAGATGTAACTGCTTTACATGCCTTGA
TACATACCTACGAAATGACAGGTAGGAGAGAAGAAGGGGAAAAAATCTAC
AAAGAATTCAAGGGAAAATGGGAAGACCTTCCGTCCCTTTTCACTAACCA
CGTGGCCTGGCATCGGGCTGTGTTGGCGTTGGGGAGAGAGGAGGGGATTG
TGTGGGAGGTGTTGGATGGAGTGTTATTGAAGGAGGGGGGGAAGGAGGGA
GGGACAGTGGCACCGGCGACGCCGTTGGCCTTGGCAGACGCGGCAAGCTT
GTTGTGGAGAATGATGTTGATGGAGGACGAGGGAGAGGAGGAGGGAGAGA
GGGGGGGAGGCAAGGAGAGAGGGCGGGAGAGGAGGAAATGGGAGGAATTG
CGGACGTGGTATGGGGATGGGGGGTACGAGACCATGCACACCACTAGCTT
TAATGACGTCCACATGATGATGTGTCTCTCAGTCACTGACATCCCCGCCG
CCAAAGCCTCTCTCTCATCCATGAAGAGACACGCTGCTGCCAGCCTACCC
CAACAACAGCAGCAGCTCAAGCAGCAACTCAGGGAACTGAGGCAGCAGCA
CGTACAACAAGAGCAATGGCCTCGATGGTGGGAGGTTGTCTATGGGATAG
GACAGCTTGTGCGAGTGTTGAAAATACCCACATTATCTGACTGGCTTCAA
CGGACCTTTCGGGAGGAGGAGAGGGAGGGAGGGAGGGAAGGAGGGAAAAA
GAGACAGGCACGACACTTCTCTTCTTCCTCCTCCTCCGGGTTGCCCTTCC
TCCTCCCGCAACCCACGAACAGCTACGTTCTCTCTGAAGTGGGATTGGAC
ATAAGTGAGGCCTTAATTCATTATGTACAAGGCAATTATTCCCAAACTGT
AAAGTTGCTTTCCTCTTCCTCGAGTCGGTGGCATTTGATTGGAGGCTCGC
ATGCACAGAGGGATGTGCTGAAATTAACACTGATTAGTGCGTGTTTAAAA
ATGGACACTGATTTAAATTTGGGTCGGAGATTATTGGCTGAAAGAGCGAT
GGAGAAAGACGAATGGAATGAGGAGGGTGTGTGGACGTTGTTGAGGAGGG
TGGCGGAAAGGAGGAGGAGGAGAAGTGGGAGAGAAAGAGAGGACGACACG
GAGGAGTTGGGGCGTAGGGAAGTATGGTTGGAAACGGCGGAGTTGTGA

protein sequence of jgi.p|Nanoce1779_2|672808

>mRNA_7527-protein ID=mRNA_7527-protein|Name=jgi.p|Nanoce1779_2|672808|organism=Nannochloropsis oceanica|type=polypeptide|length=717bp
MARPPYLGLLTALAALRLFMSVYIVAVLTFASSRDAIGYPSSSSTTSSTQ
SFPSVPSDLRTSDAWGPISTPVPPEAITLFNEAVRSYAGLRGQVLEPLLE
LTTSTPFSLSLNSSSSYLMAHIYRGSILLLSTGVLKNSPLVRESYHAAAA
FFMDLPPSHHLSHEQQLRHQQHQQQQQEYPYSSPTARERWYYLAFHALYY
PPTPDFALAAMYWEEVLAMNPRELLAVRSVHDAYIILGDSEGMKRSLARV
LSRWDLGEERVNGREEALEDEKRSEPQKEKEEKEKEAKVENDYRMVRSMW
AFALEETGDLNRAALVARQVLSEDATDVTALHALIHTYEMTGRREEGEKI
YKEFKGKWEDLPSLFTNHVAWHRAVLALGREEGIVWEVLDGVLLKEGGKE
GGTVAPATPLALADAASLLWRMMLMEDEGEEEGERGGGKERGRERRKWEE
LRTWYGDGGYETMHTTSFNDVHMMMCLSVTDIPAAKASLSSMKRHAAASL
PQQQQQLKQQLRELRQQHVQQEQWPRWWEVVYGIGQLVRVLKIPTLSDWL
QRTFREEEREGGREGGKKRQARHFSSSSSSGLPFLLPQPTNSYVLSEVGL
DISEALIHYVQGNYSQTVKLLSSSSSRWHLIGGSHAQRDVLKLTLISACL
KMDTDLNLGRRLLAERAMEKDEWNEEGVWTLLRRVAERRRRRSGREREDD
TEELGRREVWLETAEL*

mRNA from alignment at scaffold_20:181941..184388+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7527 ID=mRNA_7527|Name=jgi.p|Nanoce1779_2|672808|organism=Nannochloropsis oceanica|type=mRNA|length=2448bp|location=Sequence derived from alignment at scaffold_20:181941..184388+ (Nannochloropsis oceanica)
TCTAGGACCTCACCTGTGTTTTGTACGAAGGAAAGGGGAAGATGTAGGGA
GGTCAGGGAGGAGATGGGAAGTACAAATACATGCAAGAACATCGACCTTG
CGTTCCTGGACGTCCAGCCTACTCATGCGTGACTATCAAGGACAAGCGTA
GAGCTAAAACCCTCGTGGGCAGGCACGCTTGCGAGTTGTGTGTTGGTTGC
CGTCAATCGCTGATTTGCTTCAAGCTTCGTTCCTTAAGCAAGAAAGCAGC
AGTACCTTTCTGACCCACCCTACACACCGCAGAGGCTACGCACATTCATG
GCTAGACCACCATACCTTGGCCTTCTTACCGCCCTGGCTGCGCTGCGCCT
CTTCATGTCTGTGTACATCGTGGCCGTGTTGACCTTCGCCTCCTCGCGTG
ACGCCATCGGCTATCCCTCTTCCAGCAGCACCACTTCTTCTACTCAATCC
TTTCCCTCGGTTCCATCTGATCTTCGTACATCCGATGCCTGGGGTCCCAT
TTCCACACCTGTCCCCCCCGAGGCTATCACACTCTTCAATGAAGCTGTCC
GGTCTTATGCGGGGCTGCGAGGCCAGGTGCTTGAACCCCTCTTGGAGCTC
ACCACCAGCACCCCTTTCTCTCTCTCCCTCAATTCGTCATCCTCATATTT
GATGGCACATATATACCGAGGTTCCATCCTTCTGTTGTCGACAGGTGTGC
TAAAAAATAGCCCACTTGTCCGAGAAAGCTATCACGCCGCTGCTGCCTTC
TTCATGGACCTCCCTCCCTCCCACCACCTTTCCCATGAGCAACAGCTGCG
CCACCAGCAGCACCAACAGCAACAGCAAGAGTACCCGTATTCAAGCCCAA
CAGCTCGTGAACGTTGGTATTATCTCGCGTTTCATGCCCTGTATTACCCG
CCCACTCCTGATTTCGCACTTGCCGCCATGTATTGGGAAGAGGTCTTAGC
AATGAACCCTCGGGAATTGTTGGCGGTAAGGAGTGTCCATGACGCGTACA
TTATTTTAGGGGATAGCGAGGGAATGAAGAGGAGCTTGGCCAGGGTGTTG
AGTCGATGGGACTTGGGGGAGGAAAGGGTGAATGGGAGGGAGGAAGCATT
GGAGGACGAGAAACGTTCGGAGCCCCAAAAGGAGAAGGAGGAGAAGGAGA
AGGAGGCGAAGGTGGAGAATGATTACCGTATGGTTCGAAGTATGTGGGCT
TTCGCCTTGGAAGAAACAGGCGATCTGAACCGTGCCGCCCTTGTAGCCCG
TCAAGTCCTGTCGGAAGACGCTACAGATGTAACTGCTTTACATGCCTTGA
TACATACCTACGAAATGACAGGTAGGAGAGAAGAAGGGGAAAAAATCTAC
AAAGAATTCAAGGGAAAATGGGAAGACCTTCCGTCCCTTTTCACTAACCA
CGTGGCCTGGCATCGGGCTGTGTTGGCGTTGGGGAGAGAGGAGGGGATTG
TGTGGGAGGTGTTGGATGGAGTGTTATTGAAGGAGGGGGGGAAGGAGGGA
GGGACAGTGGCACCGGCGACGCCGTTGGCCTTGGCAGACGCGGCAAGCTT
GTTGTGGAGAATGATGTTGATGGAGGACGAGGGAGAGGAGGAGGGAGAGA
GGGGGGGAGGCAAGGAGAGAGGGCGGGAGAGGAGGAAATGGGAGGAATTG
CGGACGTGGTATGGGGATGGGGGGTACGAGACCATGCACACCACTAGCTT
TAATGACGTCCACATGATGATGTGTCTCTCAGTCACTGACATCCCCGCCG
CCAAAGCCTCTCTCTCATCCATGAAGAGACACGCTGCTGCCAGCCTACCC
CAACAACAGCAGCAGCTCAAGCAGCAACTCAGGGAACTGAGGCAGCAGCA
CGTACAACAAGAGCAATGGCCTCGATGGTGGGAGGTTGTCTATGGGATAG
GACAGCTTGTGCGAGTGTTGAAAATACCCACATTATCTGACTGGCTTCAA
CGGACCTTTCGGGAGGAGGAGAGGGAGGGAGGGAGGGAAGGAGGGAAAAA
GAGACAGGCACGACACTTCTCTTCTTCCTCCTCCTCCGGGTTGCCCTTCC
TCCTCCCGCAACCCACGAACAGCTACGTTCTCTCTGAAGTGGGATTGGAC
ATAAGTGAGGCCTTAATTCATTATGTACAAGGCAATTATTCCCAAACTGT
AAAGTTGCTTTCCTCTTCCTCGAGTCGGTGGCATTTGATTGGAGGCTCGC
ATGCACAGAGGGATGTGCTGAAATTAACACTGATTAGTGCGTGTTTAAAA
ATGGACACTGATTTAAATTTGGGTCGGAGATTATTGGCTGAAAGAGCGAT
GGAGAAAGACGAATGGAATGAGGAGGGTGTGTGGACGTTGTTGAGGAGGG
TGGCGGAAAGGAGGAGGAGGAGAAGTGGGAGAGAAAGAGAGGACGACACG
GAGGAGTTGGGGCGTAGGGAAGTATGGTTGGAAACGGCGGAGTTGTGA

Coding sequence (CDS) from alignment at scaffold_20:181941..184388+

>mRNA_7527 ID=mRNA_7527|Name=jgi.p|Nanoce1779_2|672808|organism=Nannochloropsis oceanica|type=CDS|length=2151bp|location=Sequence derived from alignment at scaffold_20:181941..184388+ (Nannochloropsis oceanica)
ATGGCTAGACCACCATACCTTGGCCTTCTTACCGCCCTGGCTGCGCTGCG
CCTCTTCATGTCTGTGTACATCGTGGCCGTGTTGACCTTCGCCTCCTCGC
GTGACGCCATCGGCTATCCCTCTTCCAGCAGCACCACTTCTTCTACTCAA
TCCTTTCCCTCGGTTCCATCTGATCTTCGTACATCCGATGCCTGGGGTCC
CATTTCCACACCTGTCCCCCCCGAGGCTATCACACTCTTCAATGAAGCTG
TCCGGTCTTATGCGGGGCTGCGAGGCCAGGTGCTTGAACCCCTCTTGGAG
CTCACCACCAGCACCCCTTTCTCTCTCTCCCTCAATTCGTCATCCTCATA
TTTGATGGCACATATATACCGAGGTTCCATCCTTCTGTTGTCGACAGGTG
TGCTAAAAAATAGCCCACTTGTCCGAGAAAGCTATCACGCCGCTGCTGCC
TTCTTCATGGACCTCCCTCCCTCCCACCACCTTTCCCATGAGCAACAGCT
GCGCCACCAGCAGCACCAACAGCAACAGCAAGAGTACCCGTATTCAAGCC
CAACAGCTCGTGAACGTTGGTATTATCTCGCGTTTCATGCCCTGTATTAC
CCGCCCACTCCTGATTTCGCACTTGCCGCCATGTATTGGGAAGAGGTCTT
AGCAATGAACCCTCGGGAATTGTTGGCGGTAAGGAGTGTCCATGACGCGT
ACATTATTTTAGGGGATAGCGAGGGAATGAAGAGGAGCTTGGCCAGGGTG
TTGAGTCGATGGGACTTGGGGGAGGAAAGGGTGAATGGGAGGGAGGAAGC
ATTGGAGGACGAGAAACGTTCGGAGCCCCAAAAGGAGAAGGAGGAGAAGG
AGAAGGAGGCGAAGGTGGAGAATGATTACCGTATGGTTCGAAGTATGTGG
GCTTTCGCCTTGGAAGAAACAGGCGATCTGAACCGTGCCGCCCTTGTAGC
CCGTCAAGTCCTGTCGGAAGACGCTACAGATGTAACTGCTTTACATGCCT
TGATACATACCTACGAAATGACAGGTAGGAGAGAAGAAGGGGAAAAAATC
TACAAAGAATTCAAGGGAAAATGGGAAGACCTTCCGTCCCTTTTCACTAA
CCACGTGGCCTGGCATCGGGCTGTGTTGGCGTTGGGGAGAGAGGAGGGGA
TTGTGTGGGAGGTGTTGGATGGAGTGTTATTGAAGGAGGGGGGGAAGGAG
GGAGGGACAGTGGCACCGGCGACGCCGTTGGCCTTGGCAGACGCGGCAAG
CTTGTTGTGGAGAATGATGTTGATGGAGGACGAGGGAGAGGAGGAGGGAG
AGAGGGGGGGAGGCAAGGAGAGAGGGCGGGAGAGGAGGAAATGGGAGGAA
TTGCGGACGTGGTATGGGGATGGGGGGTACGAGACCATGCACACCACTAG
CTTTAATGACGTCCACATGATGATGTGTCTCTCAGTCACTGACATCCCCG
CCGCCAAAGCCTCTCTCTCATCCATGAAGAGACACGCTGCTGCCAGCCTA
CCCCAACAACAGCAGCAGCTCAAGCAGCAACTCAGGGAACTGAGGCAGCA
GCACGTACAACAAGAGCAATGGCCTCGATGGTGGGAGGTTGTCTATGGGA
TAGGACAGCTTGTGCGAGTGTTGAAAATACCCACATTATCTGACTGGCTT
CAACGGACCTTTCGGGAGGAGGAGAGGGAGGGAGGGAGGGAAGGAGGGAA
AAAGAGACAGGCACGACACTTCTCTTCTTCCTCCTCCTCCGGGTTGCCCT
TCCTCCTCCCGCAACCCACGAACAGCTACGTTCTCTCTGAAGTGGGATTG
GACATAAGTGAGGCCTTAATTCATTATGTACAAGGCAATTATTCCCAAAC
TGTAAAGTTGCTTTCCTCTTCCTCGAGTCGGTGGCATTTGATTGGAGGCT
CGCATGCACAGAGGGATGTGCTGAAATTAACACTGATTAGTGCGTGTTTA
AAAATGGACACTGATTTAAATTTGGGTCGGAGATTATTGGCTGAAAGAGC
GATGGAGAAAGACGAATGGAATGAGGAGGGTGTGTGGACGTTGTTGAGGA
GGGTGGCGGAAAGGAGGAGGAGGAGAAGTGGGAGAGAAAGAGAGGACGAC
ACGGAGGAGTTGGGGCGTAGGGAAGTATGGTTGGAAACGGCGGAGTTGTG
A

Synonyms

Publications