jgi.p|Nanoce1779_2|599062, mRNA_7526 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599062
Unique NamemRNA_7526
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1421
Alignment locationscaffold_20:179989..181409 -

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Properties
Property NameValue
TranscriptId599148
TrackFilteredModels2
ProteinId599062
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:179989..181409 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599062gene_7526Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599062mRNA_7526-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7526CDS_7526Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7526 ID=mRNA_7526|Name=jgi.p|Nanoce1779_2|599062|organism=Nannochloropsis oceanica|type=mRNA|length=1421bp
GTGTCATCGAAGCCTTCTTTCCCCTCTTCGCCGCGCAGCCCACGAAAATT
CTCTTCGATTCTGAAGGCGATGCAGCCTTAGCTAGTAAAGCCTACAGCCG
CGGTTTTGACATCCCTGCGACTTGTTCCTTTGCTGGACTCTCCCCACAGT
CCATCGCGCCAACCGACGAAATCATTTTTTTAATCGAACCGACCAACCGC
CCGGGCTCCCCCGTGATTAGCGCTATTCAGTCTTTGCTTGACACTAATCC
AGATAAGACTTTTATTCTGTTTAACCCTAACCTTGAGCCGTCCGGTGCAG
GGCTTGGAATCCGCGAACGCGATCGCCGGCAGCAATTTCTTGACTCCTTC
AAATCTGCGTACATCTACTTGTGTCTCGCCTCGCTCTCGCGCCCCGCGCT
GATTCCTAGGGAATTAGGGACCTTTCATTATCAATTTGAACAGAACAACT
ATCGCCTTTTGCGGTGTCTCCTGACAGAAGATGGCCCTGGGAGCCTTAAC
CGTTTCCTCAAACGCCCAATCTACCCTTCCTCGTCCCTCACCCCTACTGC
TACGAATCCGCCCAAGTTTTATCTGGTTAAGGAATGGGCAGGCGTACGAC
CGGCTCAGGAAGAGTTGTCAAGAGCAATGCAAGGAGCTGAGGCAGTCTTG
GAAGGATTGATTCGAGGACTGAGCGAGGGTGAGGGAGGGAAGGAAGGAGC
GGCACGGAGCGTAATGAAAATAGAAACAGTCGACGAAGCCAAGCGCGTCC
TAGTCGAGGCTTCACAAACTCGAAAGGTCGCCCCTGAACTCGTCGGCGCT
GCCATATCTTTCCTGGAGAAAAGTGCGCGAAAAGGGAAAAAGTCCCCTGA
AGACGGCGAGAAAGAGGCAGAAGAGCTCTTGAGGAAAATAACAGGTCGCT
GGCGCCTCATTTTCACCACGGGGACCAAAGGCACACAAAACACAATTGGC
AAAATTAATTACTTCCCCGTCAAGGCTGTGCAAAGCTTCGGAGTGCCGTT
CTCGTCTTCCCTCCCTCCCTCGTCCCCGAGTGAGTATGCGAATGTTATTT
ATCTCGGTCCCTGGCCAGTTGTGCAAGTGCTCGGGTCGTTTAATTGCCCG
AAATTTCAAAAATTGGAATTCAAAGTTGATAGTATTAAGCTGGGTCCCGT
TGGGTTTGGATCAAAGGGGGATGGATTCTTCACTTTTTTTTATGTGGATG
AGGCGGTGGCTGTTGCGAGGGGGCAGGGAGGGGGCTTGGCTCTATGGTAT
AAGCAGTAGGGAATAAGGAAACGCAGGGAGGAGACGAGGAGGAAGAGGAG
CAGAATTGTCGTGTTTGTACATTGCACTTATCATTTTAGTGAATAATTTA
TTCTATTAACCACTCAACCATTAAAGAAAAAGCGTGTAAGTGAGTGAAAA
ACAGAAACAGTCATGAAAAAA
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protein sequence of jgi.p|Nanoce1779_2|599062

>mRNA_7526-protein ID=mRNA_7526-protein|Name=jgi.p|Nanoce1779_2|599062|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MQGAEAVLEGLIRGLSEGEGGKEGAARSVMKIETVDEAKRVLVEASQTRK
VAPELVGAAISFLEKSARKGKKSPEDGEKEAEELLRKITGRWRLIFTTGT
KGTQNTIGKINYFPVKAVQSFGVPFSSSLPPSSPSEYANVIYLGPWPVVQ
VLGSFNCPKFQKLEFKVDSIKLGPVGFGSKGDGFFTFFYVDEAVAVARGQ
GGGLALWYKQ*
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mRNA from alignment at scaffold_20:179989..181409-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7526 ID=mRNA_7526|Name=jgi.p|Nanoce1779_2|599062|organism=Nannochloropsis oceanica|type=mRNA|length=1421bp|location=Sequence derived from alignment at scaffold_20:179989..181409- (Nannochloropsis oceanica)
GTGTCATCGAAGCCTTCTTTCCCCTCTTCGCCGCGCAGCCCACGAAAATT
CTCTTCGATTCTGAAGGCGATGCAGCCTTAGCTAGTAAAGCCTACAGCCG
CGGTTTTGACATCCCTGCGACTTGTTCCTTTGCTGGACTCTCCCCACAGT
CCATCGCGCCAACCGACGAAATCATTTTTTTAATCGAACCGACCAACCGC
CCGGGCTCCCCCGTGATTAGCGCTATTCAGTCTTTGCTTGACACTAATCC
AGATAAGACTTTTATTCTGTTTAACCCTAACCTTGAGCCGTCCGGTGCAG
GGCTTGGAATCCGCGAACGCGATCGCCGGCAGCAATTTCTTGACTCCTTC
AAATCTGCGTACATCTACTTGTGTCTCGCCTCGCTCTCGCGCCCCGCGCT
GATTCCTAGGGAATTAGGGACCTTTCATTATCAATTTGAACAGAACAACT
ATCGCCTTTTGCGGTGTCTCCTGACAGAAGATGGCCCTGGGAGCCTTAAC
CGTTTCCTCAAACGCCCAATCTACCCTTCCTCGTCCCTCACCCCTACTGC
TACGAATCCGCCCAAGTTTTATCTGGTTAAGGAATGGGCAGGCGTACGAC
CGGCTCAGGAAGAGTTGTCAAGAGCAATGCAAGGAGCTGAGGCAGTCTTG
GAAGGATTGATTCGAGGACTGAGCGAGGGTGAGGGAGGGAAGGAAGGAGC
GGCACGGAGCGTAATGAAAATAGAAACAGTCGACGAAGCCAAGCGCGTCC
TAGTCGAGGCTTCACAAACTCGAAAGGTCGCCCCTGAACTCGTCGGCGCT
GCCATATCTTTCCTGGAGAAAAGTGCGCGAAAAGGGAAAAAGTCCCCTGA
AGACGGCGAGAAAGAGGCAGAAGAGCTCTTGAGGAAAATAACAGGTCGCT
GGCGCCTCATTTTCACCACGGGGACCAAAGGCACACAAAACACAATTGGC
AAAATTAATTACTTCCCCGTCAAGGCTGTGCAAAGCTTCGGAGTGCCGTT
CTCGTCTTCCCTCCCTCCCTCGTCCCCGAGTGAGTATGCGAATGTTATTT
ATCTCGGTCCCTGGCCAGTTGTGCAAGTGCTCGGGTCGTTTAATTGCCCG
AAATTTCAAAAATTGGAATTCAAAGTTGATAGTATTAAGCTGGGTCCCGT
TGGGTTTGGATCAAAGGGGGATGGATTCTTCACTTTTTTTTATGTGGATG
AGGCGGTGGCTGTTGCGAGGGGGCAGGGAGGGGGCTTGGCTCTATGGTAT
AAGCAGTAGGGAATAAGGAAACGCAGGGAGGAGACGAGGAGGAAGAGGAG
CAGAATTGTCGTGTTTGTACATTGCACTTATCATTTTAGTGAATAATTTA
TTCTATTAACCACTCAACCATTAAAGAAAAAGCGTGTAAGTGAGTGAAAA
ACAGAAACAGTCATGAAAAAA
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Coding sequence (CDS) from alignment at scaffold_20:179989..181409-

>mRNA_7526 ID=mRNA_7526|Name=jgi.p|Nanoce1779_2|599062|organism=Nannochloropsis oceanica|type=CDS|length=633bp|location=Sequence derived from alignment at scaffold_20:179989..181409- (Nannochloropsis oceanica)
ATGCAAGGAGCTGAGGCAGTCTTGGAAGGATTGATTCGAGGACTGAGCGA
GGGTGAGGGAGGGAAGGAAGGAGCGGCACGGAGCGTAATGAAAATAGAAA
CAGTCGACGAAGCCAAGCGCGTCCTAGTCGAGGCTTCACAAACTCGAAAG
GTCGCCCCTGAACTCGTCGGCGCTGCCATATCTTTCCTGGAGAAAAGTGC
GCGAAAAGGGAAAAAGTCCCCTGAAGACGGCGAGAAAGAGGCAGAAGAGC
TCTTGAGGAAAATAACAGGTCGCTGGCGCCTCATTTTCACCACGGGGACC
AAAGGCACACAAAACACAATTGGCAAAATTAATTACTTCCCCGTCAAGGC
TGTGCAAAGCTTCGGAGTGCCGTTCTCGTCTTCCCTCCCTCCCTCGTCCC
CGAGTGAGTATGCGAATGTTATTTATCTCGGTCCCTGGCCAGTTGTGCAA
GTGCTCGGGTCGTTTAATTGCCCGAAATTTCAAAAATTGGAATTCAAAGT
TGATAGTATTAAGCTGGGTCCCGTTGGGTTTGGATCAAAGGGGGATGGAT
TCTTCACTTTTTTTTATGTGGATGAGGCGGTGGCTGTTGCGAGGGGGCAG
GGAGGGGGCTTGGCTCTATGGTATAAGCAGTAG
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Synonyms
Publications