jgi.p|Nanoce1779_2|641204, mRNA_7523 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|641204
Unique Name	mRNA_7523
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	906
Alignment location	scaffold_20:174270..175562 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	641290
Track	FilteredModels2
ProteinId	641204

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_20	supercontig	scaffold_20:174270..175562 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|641204	gene_7523	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|641204	mRNA_7523-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7523	CDS_7523	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_20:174270..175562+
coding sequence from alignment at scaffold_20:174270..175562+

mRNA sequence

>mRNA_7523 ID=mRNA_7523|Name=jgi.p|Nanoce1779_2|641204|organism=Nannochloropsis oceanica|type=mRNA|length=906bp
ATGTTTGGGGTGTTGGCAACGGACGAGACTTGGCGAAGGGGGAAGTACCT
TGTCTTGACGAGCTGGGCTCGTCGGCACGTTTTTGTTGCTGCCGCTAACT
GGTCGCTCAAGCCAGATCCCACATATACCACAGCCACCATGACAGACACG
GCCCCGACGATGACAGAAGCGCCAATGTCAGCAGGCGAGCCGGAGCCCCA
GCAGGAACCCCAGCATGGAGAAGTCTCCGTCCCCGCGGCGATGGAACAGC
AAGGCGAGAACGACCGCAGCCAGAGCCAGGAAACAGGCGCTGCCGCCGCG
ACCACCAACACTACCACCACCATCACCACCAACCACAACAAGAGCCCTGA
ATTCGAGCCGCCCTTGTCGAGCGTTACAAAGGTGATACGTCGGGCAGTTG
GAGACAGTGTCCAAGTGGGGAAGGAGGCCAAGGCAACGTTTACCCGCGCG
GCCGGAATTTTTATATTGTATATTACTGCGTGCGCGAATGACTTTTCGAG
GGATGGGAAGCGGTCGACACTGACGGCGAACGACGTGTTTGCTGCCTTGA
AGGAGTTGGATTTCGAGGATATGATAGAACCATTACAAGATTTTCTTAAA
CGGTCGAGTGAGGAGAAGAAGAACAAGATCGAAAGGAAGGCGATCCTGAA
GAGGGAGGAGGCCGCGGAAGGAGGAGCAGAAAAGGAGGGAGCTACCTCAG
GCAAGGAAGAAGAAGAGGAAGAAGGCAGCGCCGCCGAAATGGACCAGGAC
CAGGACGAGGGCGAGGAAGAGGAAGAGGAGGAGGAAGGGGAAGAGGGAGA
GGGGGAAGGGGAGGATGCAAGTCAGGAGGATGCCAAGGCACCTTCCGAGA
TGATGGGGGAGGAAGACGACGAGGAGGAGGAAGAGGAAGATGAGGAGGCA
AATTGA

protein sequence of jgi.p|Nanoce1779_2|641204

>mRNA_7523-protein ID=mRNA_7523-protein|Name=jgi.p|Nanoce1779_2|641204|organism=Nannochloropsis oceanica|type=polypeptide|length=302bp
MFGVLATDETWRRGKYLVLTSWARRHVFVAAANWSLKPDPTYTTATMTDT
APTMTEAPMSAGEPEPQQEPQHGEVSVPAAMEQQGENDRSQSQETGAAAA
TTNTTTTITTNHNKSPEFEPPLSSVTKVIRRAVGDSVQVGKEAKATFTRA
AGIFILYITACANDFSRDGKRSTLTANDVFAALKELDFEDMIEPLQDFLK
RSSEEKKNKIERKAILKREEAAEGGAEKEGATSGKEEEEEEGSAAEMDQD
QDEGEEEEEEEEGEEGEGEGEDASQEDAKAPSEMMGEEDDEEEEEEDEEA
N*

mRNA from alignment at scaffold_20:174270..175562+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7523 ID=mRNA_7523|Name=jgi.p|Nanoce1779_2|641204|organism=Nannochloropsis oceanica|type=mRNA|length=1293bp|location=Sequence derived from alignment at scaffold_20:174270..175562+ (Nannochloropsis oceanica)
ATGTTTGGGGTGTTGGCAACGGACGAGACTTGGCGAAGGGGGAAGGTACG
TCCTGACGGTAGACGCTCCCGCCGTCGGTCTCTTGCCGCTACCCCGTAAA
TTCTCACCCACCACTCACAACACATCCTTGCACCGCACATTCACCACAAG
TACCTTGTCTTGACGAGCTGGGCTCGTCGGCACGTTTTTGTTGCTGCCGC
TAACTGGTCGCTCAAGCCAGATGTAAACGAAGCGAGGCATCGCTCATCAT
GCAAAAGAAGTCAGCGGGGAGCGAAATACACCCACTCCATGTCACTTAGT
CACTGTAGCCCACATATACCACAGCCACCATGACAGACACGGCCCCGACG
ATGACAGAAGCGCCAATGTCAGCAGGCGAGCCGGAGCCCCAGCAGGAACC
CCAGCATGGAGAAGTCTCCGTCCCCGCGGCGATGGAACAGCAAGGCGAGA
ACGACCGCAGCCAGAGCCAGGAAACAGGCGCTGCCGCCGCGACCACCAAC
ACTACCACCACCATCACCACCAACCACAACAAGAGCCCTGAATTCGAGCC
GCCCTTGTCGAGCGTTACAAAGGTGATACGTCGGGCAGTTGGAGACAGTG
TCCAAGTGGGGAAGGAGGCCAAGGCAACGTTTACCCGCGCGGCCGGAATT
TTTATATTGTATATTACTGCGTGCGCGAATGACTTTTCGAGGGATGGGAA
GCGGTCGACACTGACGGCGAACGACGTGTTTGCTGCCTTGAAGGAGTTGG
ATTTCGAGGATATGATAGAACCATTACAAGATTTTCTTAAACGGTCGAGT
GAGGAGAAGAAGAACAAGATCGAAAGGAAGGCGATCCTGAAGAGGGAGGA
GGCCGCGGAAGGAGGAGCAGAAAAGGAGGTACGTATGGAAATGCAAGGAA
GGAAGGGAGGGAGGGAGAATACGGTATGGATATATGTATCGTGTCTTGAC
TACCTTCTTCCCTCCTTCCCTATCTTCATTCCTCTCTCCCTCCCTCCCTC
CCGCCCTTTCTTTCCTCCCTGCCCTCCCTCTTTTCTCTCTCTCTCTTCCC
TTTCTTCGACCCACCAAATAATAGGGAGCTACCTCAGGCAAGGAAGAAGA
AGAGGAAGAAGGCAGCGCCGCCGAAATGGACCAGGACCAGGACGAGGGCG
AGGAAGAGGAAGAGGAGGAGGAAGGGGAAGAGGGAGAGGGGGAAGGGGAG
GATGCAAGTCAGGAGGATGCCAAGGCACCTTCCGAGATGATGGGGGAGGA
AGACGACGAGGAGGAGGAAGAGGAAGATGAGGAGGCAAATTGA

Coding sequence (CDS) from alignment at scaffold_20:174270..175562+

>mRNA_7523 ID=mRNA_7523|Name=jgi.p|Nanoce1779_2|641204|organism=Nannochloropsis oceanica|type=CDS|length=3624bp|location=Sequence derived from alignment at scaffold_20:174270..175562+ (Nannochloropsis oceanica)
ATGTTTGGGGTGTTGGCAACGGACGAGACTTGGCGAAGGGGGAAGTACCT
TGTCTTGACGAGCTGGGCTCGTCGGCACGTTTTTGTTGCTGCCGCTAACT
GGTCGCTCAAGCCAGATCCCACATATACCACAGCCACCATGACAGACACG
GCCCCGACGATGACAGAAGCGCCAATGTCAGCAGGCGAGCCGGAGCCCCA
GCAGGAACCCCAGCATGGAGAAGTCTCCGTCCCCGCGGCGATGGAACAGC
AAGGCGAGAACGACCGCAGCCAGAGCCAGGAAACAGGCGCTGCCGCCGCG
ACCACCAACACTACCACCACCATCACCACCAACCACAACAAGAGCCCTGA
ATTCGAGCCGCCCTTGTCGAGCGTTACAAAGGTGATACGTCGGGCAGTTG
GAGACAGTGTCCAAGTGGGGAAGGAGGCCAAGGCAACGTTTACCCGCGCG
GCCGGAATTTTTATATTGTATATTACTGCGTGCGCGAATGACTTTTCGAG
GGATGGGAAGCGGTCGACACTGACGGCGAACGACGTGTTTGCTGCCTTGA
AGGAGTTGGATTTCGAGGATATGATAGAACCATTACAAGATTTTCTTAAA
CGGTCGAGTGAGGAGAAGAAGAACAAGATCGAAAGGAAGGCGATCCTGAA
GAGGGAGGAGGCCGCGGAAGGAGGAGCAGAAAAGGAGGGAGCTACCTCAG
GCAAGGAAGAAGAAGAGGAAGAAGGCAGCGCCGCCGAAATGGACCAGGAC
CAGGACGAGGGCGAGGAAGAGGAAGAGGAGGAGGAAGGGGAAGAGGGAGA
GGGGGAAGGGGAGGATGCAAGTCAGGAGGATGCCAAGGCACCTTCCGAGA
TGATGGGGGAGGAAGACGACGAGGAGGAGGAAGAGGAAGATGAGGAGGCA
AATTGAATGTTTGGGGTGTTGGCAACGGACGAGACTTGGCGAAGGGGGAA
GTACCTTGTCTTGACGAGCTGGGCTCGTCGGCACGTTTTTGTTGCTGCCG
CTAACTGGTCGCTCAAGCCAGATCCCACATATACCACAGCCACCATGACA
GACACGGCCCCGACGATGACAGAAGCGCCAATGTCAGCAGGCGAGCCGGA
GCCCCAGCAGGAACCCCAGCATGGAGAAGTCTCCGTCCCCGCGGCGATGG
AACAGCAAGGCGAGAACGACCGCAGCCAGAGCCAGGAAACAGGCGCTGCC
GCCGCGACCACCAACACTACCACCACCATCACCACCAACCACAACAAGAG
CCCTGAATTCGAGCCGCCCTTGTCGAGCGTTACAAAGGTGATACGTCGGG
CAGTTGGAGACAGTGTCCAAGTGGGGAAGGAGGCCAAGGCAACGTTTACC
CGCGCGGCCGGAATTTTTATATTGTATATTACTGCGTGCGCGAATGACTT
TTCGAGGGATGGGAAGCGGTCGACACTGACGGCGAACGACGTGTTTGCTG
CCTTGAAGGAGTTGGATTTCGAGGATATGATAGAACCATTACAAGATTTT
CTTAAACGGTCGAGTGAGGAGAAGAAGAACAAGATCGAAAGGAAGGCGAT
CCTGAAGAGGGAGGAGGCCGCGGAAGGAGGAGCAGAAAAGGAGGGAGCTA
CCTCAGGCAAGGAAGAAGAAGAGGAAGAAGGCAGCGCCGCCGAAATGGAC
CAGGACCAGGACGAGGGCGAGGAAGAGGAAGAGGAGGAGGAAGGGGAAGA
GGGAGAGGGGGAAGGGGAGGATGCAAGTCAGGAGGATGCCAAGGCACCTT
CCGAGATGATGGGGGAGGAAGACGACGAGGAGGAGGAAGAGGAAGATGAG
GAGGCAAATTGAATGTTTGGGGTGTTGGCAACGGACGAGACTTGGCGAAG
GGGGAAGTACCTTGTCTTGACGAGCTGGGCTCGTCGGCACGTTTTTGTTG
CTGCCGCTAACTGGTCGCTCAAGCCAGATCCCACATATACCACAGCCACC
ATGACAGACACGGCCCCGACGATGACAGAAGCGCCAATGTCAGCAGGCGA
GCCGGAGCCCCAGCAGGAACCCCAGCATGGAGAAGTCTCCGTCCCCGCGG
CGATGGAACAGCAAGGCGAGAACGACCGCAGCCAGAGCCAGGAAACAGGC
GCTGCCGCCGCGACCACCAACACTACCACCACCATCACCACCAACCACAA
CAAGAGCCCTGAATTCGAGCCGCCCTTGTCGAGCGTTACAAAGGTGATAC
GTCGGGCAGTTGGAGACAGTGTCCAAGTGGGGAAGGAGGCCAAGGCAACG
TTTACCCGCGCGGCCGGAATTTTTATATTGTATATTACTGCGTGCGCGAA
TGACTTTTCGAGGGATGGGAAGCGGTCGACACTGACGGCGAACGACGTGT
TTGCTGCCTTGAAGGAGTTGGATTTCGAGGATATGATAGAACCATTACAA
GATTTTCTTAAACGGTCGAGTGAGGAGAAGAAGAACAAGATCGAAAGGAA
GGCGATCCTGAAGAGGGAGGAGGCCGCGGAAGGAGGAGCAGAAAAGGAGG
GAGCTACCTCAGGCAAGGAAGAAGAAGAGGAAGAAGGCAGCGCCGCCGAA
ATGGACCAGGACCAGGACGAGGGCGAGGAAGAGGAAGAGGAGGAGGAAGG
GGAAGAGGGAGAGGGGGAAGGGGAGGATGCAAGTCAGGAGGATGCCAAGG
CACCTTCCGAGATGATGGGGGAGGAAGACGACGAGGAGGAGGAAGAGGAA
GATGAGGAGGCAAATTGAATGTTTGGGGTGTTGGCAACGGACGAGACTTG
GCGAAGGGGGAAGTACCTTGTCTTGACGAGCTGGGCTCGTCGGCACGTTT
TTGTTGCTGCCGCTAACTGGTCGCTCAAGCCAGATCCCACATATACCACA
GCCACCATGACAGACACGGCCCCGACGATGACAGAAGCGCCAATGTCAGC
AGGCGAGCCGGAGCCCCAGCAGGAACCCCAGCATGGAGAAGTCTCCGTCC
CCGCGGCGATGGAACAGCAAGGCGAGAACGACCGCAGCCAGAGCCAGGAA
ACAGGCGCTGCCGCCGCGACCACCAACACTACCACCACCATCACCACCAA
CCACAACAAGAGCCCTGAATTCGAGCCGCCCTTGTCGAGCGTTACAAAGG
TGATACGTCGGGCAGTTGGAGACAGTGTCCAAGTGGGGAAGGAGGCCAAG
GCAACGTTTACCCGCGCGGCCGGAATTTTTATATTGTATATTACTGCGTG
CGCGAATGACTTTTCGAGGGATGGGAAGCGGTCGACACTGACGGCGAACG
ACGTGTTTGCTGCCTTGAAGGAGTTGGATTTCGAGGATATGATAGAACCA
TTACAAGATTTTCTTAAACGGTCGAGTGAGGAGAAGAAGAACAAGATCGA
AAGGAAGGCGATCCTGAAGAGGGAGGAGGCCGCGGAAGGAGGAGCAGAAA
AGGAGGGAGCTACCTCAGGCAAGGAAGAAGAAGAGGAAGAAGGCAGCGCC
GCCGAAATGGACCAGGACCAGGACGAGGGCGAGGAAGAGGAAGAGGAGGA
GGAAGGGGAAGAGGGAGAGGGGGAAGGGGAGGATGCAAGTCAGGAGGATG
CCAAGGCACCTTCCGAGATGATGGGGGAGGAAGACGACGAGGAGGAGGAA
GAGGAAGATGAGGAGGCAAATTGA

Synonyms

Publications