jgi.p|Nanoce1779_2|599051, mRNA_7522 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599051
Unique NamemRNA_7522
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length702
Alignment locationscaffold_20:172105..172806 -

Link to JBrowse

Properties
Property NameValue
TranscriptId599137
TrackFilteredModels2
ProteinId599051
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:172105..172806 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599051gene_7522Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599051mRNA_7522-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7522CDS_7522Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7522 ID=mRNA_7522|Name=jgi.p|Nanoce1779_2|599051|organism=Nannochloropsis oceanica|type=mRNA|length=702bp
CAACAACGACGACAACAACAAAAACAAAAGTAACATCAGGCCTATTCTAC
CATTACCCTCCTCCTCCTTCTCCTCATCCTCTCCCTTCTCCTCCTCCTCC
TCCTCCTATCAGAATCATCCAACGGCCCCCCCTCCACCATTGCTGTCCTC
CCGTCGGGAACGAGAGGGGGAGAGGGAGGGGAGGAAGGAAGGAGCTGCCG
GTGCTCGTGCAAGTGCTGCTGCTGCTCCTCATCCTCATCCTCCTGCTGCT
GCTCCTCTCAAACCCCACCGCTCCATCCAAGTGGTCCGCAACCGCGAGGC
CCGCATGGCCCTCCCTGCTTATGACTGCCCGGAGTGCTCGGGCTTTCTCG
ACGCGATCGGTGGTTTGGTGGACAGGAAGGAGGTTCTCAAAAAGTGTTCG
CGGCACCGACATGCGCACAAGCCGTACGAGACACCTGAAGGTTTTTGGGA
ATTGTCGTTTGCGGACTCGCACAATCAAGAGTAGGAGAAGGAGATGCAGA
CTTCTCATTCTGGGTCGCTGTTTGACAACCTCTCCTTGTCTCCTTTCTTT
TCCCCACTTGTCTTAATTTCCCTCCCTCCCTCCCTCCCACGAGTGTAAAA
CTACCCTCTCATGCCACCTGTATCTACTTCCGAGGAAGTCTCCTCCTCTC
GACACCCAGCAAATTACAAGAAAAAGAATAAAACAAATGTTGTCGATGTG
TA
back to top

protein sequence of jgi.p|Nanoce1779_2|599051

>mRNA_7522-protein ID=mRNA_7522-protein|Name=jgi.p|Nanoce1779_2|599051|organism=Nannochloropsis oceanica|type=polypeptide|length=60bp
MALPAYDCPECSGFLDAIGGLVDRKEVLKKCSRHRHAHKPYETPEGFWEL
SFADSHNQE*
back to top

mRNA from alignment at scaffold_20:172105..172806-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7522 ID=mRNA_7522|Name=jgi.p|Nanoce1779_2|599051|organism=Nannochloropsis oceanica|type=mRNA|length=702bp|location=Sequence derived from alignment at scaffold_20:172105..172806- (Nannochloropsis oceanica)
CAACAACGACGACAACAACAAAAACAAAAGTAACATCAGGCCTATTCTAC
CATTACCCTCCTCCTCCTTCTCCTCATCCTCTCCCTTCTCCTCCTCCTCC
TCCTCCTATCAGAATCATCCAACGGCCCCCCCTCCACCATTGCTGTCCTC
CCGTCGGGAACGAGAGGGGGAGAGGGAGGGGAGGAAGGAAGGAGCTGCCG
GTGCTCGTGCAAGTGCTGCTGCTGCTCCTCATCCTCATCCTCCTGCTGCT
GCTCCTCTCAAACCCCACCGCTCCATCCAAGTGGTCCGCAACCGCGAGGC
CCGCATGGCCCTCCCTGCTTATGACTGCCCGGAGTGCTCGGGCTTTCTCG
ACGCGATCGGTGGTTTGGTGGACAGGAAGGAGGTTCTCAAAAAGTGTTCG
CGGCACCGACATGCGCACAAGCCGTACGAGACACCTGAAGGTTTTTGGGA
ATTGTCGTTTGCGGACTCGCACAATCAAGAGTAGGAGAAGGAGATGCAGA
CTTCTCATTCTGGGTCGCTGTTTGACAACCTCTCCTTGTCTCCTTTCTTT
TCCCCACTTGTCTTAATTTCCCTCCCTCCCTCCCTCCCACGAGTGTAAAA
CTACCCTCTCATGCCACCTGTATCTACTTCCGAGGAAGTCTCCTCCTCTC
GACACCCAGCAAATTACAAGAAAAAGAATAAAACAAATGTTGTCGATGTG
TA
back to top

Coding sequence (CDS) from alignment at scaffold_20:172105..172806-

>mRNA_7522 ID=mRNA_7522|Name=jgi.p|Nanoce1779_2|599051|organism=Nannochloropsis oceanica|type=CDS|length=180bp|location=Sequence derived from alignment at scaffold_20:172105..172806- (Nannochloropsis oceanica)
ATGGCCCTCCCTGCTTATGACTGCCCGGAGTGCTCGGGCTTTCTCGACGC
GATCGGTGGTTTGGTGGACAGGAAGGAGGTTCTCAAAAAGTGTTCGCGGC
ACCGACATGCGCACAAGCCGTACGAGACACCTGAAGGTTTTTGGGAATTG
TCGTTTGCGGACTCGCACAATCAAGAGTAG
back to top
Synonyms
Publications