|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 574101 |
| Track | FilteredModels2 |
| ProteinId | 574015 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_2 | supercontig | scaffold_2:353323..356197 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_752 ID=mRNA_752|Name=jgi.p|Nanoce1779_2|574015|organism=Nannochloropsis oceanica|type=mRNA|length=2429bp
CAGGCAACCGCCTCCCCTCCACCTTTCACAATGGTCCGACAACTCTTCCT
TTTGGCACTGTTACCAGCAGTCGCTGTGGCCTTCATGGGCCCCGCCCGCA
TGCCAAGGGGTGTACGAATGATGTCTGATGTGATGGACAAGCCCAAGGTG
AGCCCGGCCTTTTCTACTTCCCCCCCGACCGGTGGCGAGAATAAGGGCGG
GGCCTTGGTGCCTATCAACACGCAGACTATCGAGACGAGCGCCGCGATCG
TAAGCACCTCTGCGGGGATTGTTTTCCTGGGCCCGTTGTTGGGTGTGCTT
CTGGGCTTGATCACCAATTATGCAGCCAAGGCTGATAATGAGGTCGGGGA
GGCTGCGCGTGGGGTGGGGAAGACGGCGTTGGAGGTGTTCAATTACATTG
CCAAGGTTAATAGCAAGTATCAAATTGGGGCTAAGGTCTCGGACTCGGCC
TCGTCGTTGGTGGCGAAGCTGAAGGAGAATGAGGGGGAAGATTCGGTCGT
ATCGAAACTGGAGGAGACCCTTGAGACGACCAAGACGAAGTTGACCGATT
TAGATGAGCAGTACGATCTGGTGACCAAAGCGAAGAGTGCAGTGGGCCTG
GCGGTAGACTTCAGCAACACGGCTATTGACAAGGCATTGGAGTTGAACGA
GAAGTACGCCCTGGTTGACAAGACTACGGATGCGGTCAAGAAGGCCGTGA
ACAAGGCAAAGGACTCGATTTAAATATCTGGCAGAGAGATGGGAGAGATG
GGAGAGATGGGGGATGGATTGAGAAGTGTGTGTGTGTGTGTGTGTGTGTT
TGAACAGCAGTAGCACCAGTAGGACAACAGGGGCTAAAGTGCCATATTTT
TGGTCAGAGAGGGGCCGCTTCCTGTAATTGTCGGGTCTCAGACCTAACCG
TACGCTTCGTTCTTGTGTGCTCCTTCTGTTGCACGTGCTCTGTCTGGAGT
TACCAGCCCAGGCAGAGAGAGAGAAGATATGAGTGAGCGAAATTGAGGGG
CTGGGGAAAAAGAGAGAGCCGCGCTCAGTGCGGTAGTGTTTGTTGCTTGC
CGTCCGTACGGGCGTCCGTCATTGCATTTGAGATTAATTTATTTTTATCT
CTGTTTGTTTTTCTGTTCCCCCTTCTGTCATATAATATATATATATACAT
ATATATATTATAAGGCACCCTTTTTTTCCCGACTTCTCTTTACCCCGAGT
TGAATTTTCTTCTGTGTCGGGAGGACTCCTTTTTTAAGGAGCTGAGTGTT
TCCCTTCCTCCCTCGTCGTCTGTTACCAACTCCATCATCTCCATCGTTGC
AGTCATTTGTATCGCCGTTCTTAGAAAAATAAGAGGTAAGAGATAGCAAG
GTACAGCCTGTCTTTAATGTGGCAGCACAGCGACTACGCACAGAAGGATA
TGAAAAGAAGAAGAAGGAGGACGGCGAAGGAAGAAACTTGGAGGGCAGCA
ACACAGATCGGCAGTCAGAAAAATAGATTTCACCAGAGAGAAAGGCGGTG
ATGAAAAACAGTAGCATTCGACCGATTAAACCAGTTTCCACGCCACATCA
TTCAAAGAAACAAAACAGATACCGAGAGATGATTCCCATACAGGCCAAAT
ATCATTATTTTTCATATGTTGATTCCCTATTTTTGTACCAGGAAGTATGC
AAGAGCAAAGGTGGAGAGGTCATGCCGCTTTGGTGAACAATGGAAAAAAC
AGTATTGAATACGAATGTACAAATTCAAATATTTTCTCCAAACAAAAGTG
GAGATAAAACTTACGCTTCTGTGAAAATCCTGGACGAGATATGGCAGACA
GGCAAGAGAGAGGGAGAGAATGAGAAATAGGAAAGGAAAGGAGCGAGGGA
GCAGGCTACGGCCCGTTTACCACGGCGATATTGGTTGTGTCGTTGTTCAA
TACATACATAATCTGTTCTCAGTAAGTTCCTTTGCCTTCTCAAAGAGTGC
AGTGATCGACTTGTCCAAAGCACGCCTCAGGCCCGTCAGTCTCGAGCACC
TTTCTTACGAGCTCGTATGAGAAGGCACGGTTTGCCCGAAGAAATAGTTT
TCTGTTATCTCGACAACCGCAGACATAGTGAACACCAATGCAGCTGTCTG
TCGTTATATGGGGCTACGCACCGCATGTATAGGAGAGCCCGGAGTAGTAT
GGTTCGTTTCTACCTGAAATGATTCTCCAATTGGATGTTCTTGTCCTGCA
CCAAAAAGGGAACCAACCCCCCTCCCTGACAGTCACTTGTAATTTTGTCG
ACCACTTTTCTTTCGATTTCTTGATCTGTGTCGGTCGCCGAGAAAACATG
AGGTAGTGTCGGCGATCAGCGATCCTCCCTTCCTCCCCCCTCTCGCATTC
CCTCCCTCCCTCTTTCCCTATTGCTGATTAGAGATAGTAGGAGAAGGATA
AAAAGCCATCCTTCTTTCCTCTGTTCATT back to topprotein sequence of jgi.p|Nanoce1779_2|574015 >mRNA_752-protein ID=mRNA_752-protein|Name=jgi.p|Nanoce1779_2|574015|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
MVRQLFLLALLPAVAVAFMGPARMPRGVRMMSDVMDKPKVSPAFSTSPPT
GGENKGGALVPINTQTIETSAAIVSTSAGIVFLGPLLGVLLGLITNYAAK
ADNEVGEAARGVGKTALEVFNYIAKVNSKYQIGAKVSDSASSLVAKLKEN
EGEDSVVSKLEETLETTKTKLTDLDEQYDLVTKAKSAVGLAVDFSNTAID
KALELNEKYALVDKTTDAVKKAVNKAKDSI* back to topmRNA from alignment at scaffold_2:353323..356197- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_752 ID=mRNA_752|Name=jgi.p|Nanoce1779_2|574015|organism=Nannochloropsis oceanica|type=mRNA|length=2875bp|location=Sequence derived from alignment at scaffold_2:353323..356197- (Nannochloropsis oceanica)
CAGGCAACCGCCTCCCCTCCACCTTTCACAATGGTCCGACAACTCTTCCT
TTTGGCACTGTTACCAGCAGTCGCTGTGGCCTTCATGGGTAAGTACATCA
TCTCTTGCGAAAGAAGGAAGGAAGGGAGGGAGCTGTTGGCAAGGATGCCC
TAAGCGGCGTGTGCCCGCGATAACGATTAATCCCACGCTCACATGCATGC
TCACCCACACGACCCACTCGCGCCTGCTTCTCCTCCACCTCTTCTCACGA
CTCATCTCAGGCCCCGCCCGCATGCCAAGGGGGTAAGTACAACTGTGGGA
ATGGATGCCGTTTGACTCGTAGCAGTGGTCTTAGCTGACGTTCAGCATTA
TATGTGGGAGGCTTCAATGCATCCTCCTCATTTTTTACATGGAGTTTTGC
TTACACCCGTAACTCCTCAACGCTTAATCTGCCTTATGTGCTTTTGTGCG
AACCAAACCTCTGTTTTCCTCAGCTTCATCGCAACTTCACCAGCAACAGC
CAAGCAACTCATCCTCTCTCTCCTTTTTCCCCCTTCTTACCTCCAGTGTA
CGAATGATGTCTGATGTGATGGACAAGCCCAAGGTGAGCCCGGCCTTTTC
TACTTCCCCCCCGACCGGTGGCGAGAATAAGGGCGGGGCCTTGGTGCCTA
TCAACACGCAGACTATCGAGACGAGCGCCGCGATCGTAAGCACCTCTGCG
GGGATTGTTTTCCTGGGCCCGTTGTTGGGTGTGCTTCTGGGCTTGATCAC
CAATTATGCAGCCAAGGCTGATAATGAGGTCGGGGAGGCTGCGCGTGGGG
TGGGGAAGACGGCGTTGGAGGTGTTCAATTACATTGCCAAGGTTAATAGC
AAGTATCAAATTGGGGCTAAGGTCTCGGACTCGGCCTCGTCGTTGGTGGC
GAAGCTGAAGGAGAATGAGGGGGAAGATTCGGTCGTATCGAAACTGGAGG
AGACCCTTGAGACGACCAAGACGAAGTTGACCGATTTAGATGAGCAGTAC
GATCTGGTGACCAAAGCGAAGAGTGCAGTGGGCCTGGCGGTAGACTTCAG
CAACACGGCTATTGACAAGGCATTGGAGTTGAACGAGAAGTACGCCCTGG
TTGACAAGACTACGGATGCGGTCAAGAAGGCCGTGAACAAGGCAAAGGAC
TCGATTTAAATATCTGGCAGAGAGATGGGAGAGATGGGAGAGATGGGGGA
TGGATTGAGAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGAA
CAGCAGTAGCACCAGTAGGACAACAGGGGCTAAAGTGCCATATTTTTGGT
CAGAGAGGGGCCGCTTCCTGTAATTGTCGGGTCTCAGACCTAACCGTACG
CTTCGTTCTTGTGTGCTCCTTCTGTTGCACGTGCTCTGTCTGGAGTTACC
AGCCCAGGCAGAGAGAGAGAAGATATGAGTGAGCGAAATTGAGGGGCTGG
GGAAAAAGAGAGAGCCGCGCTCAGTGCGGTAGTGTTTGTTGCTTGCCGTC
CGTACGGGCGTCCGTCATTGCATTTGAGATTAATTTATTTTTATCTCTGT
TTGTTTTTCTGTTCCCCCTTCTGTCATATAATATATATATATACATATAT
ATATTATAAGGCACCCTTTTTTTCCCGACTTCTCTTTACCCCGAGTTGAA
TTTTCTTCTGTGTCGGGAGGACTCCTTTTTTAAGGAGCTGAGTGTTTCCC
TTCCTCCCTCGTCGTCTGTTACCAACTCCATCATCTCCATCGTTGCAGTC
ATTTGTATCGCCGTTCTTAGAAAAATAAGAGGTAAGAGATAGCAAGGTAC
AGCCTGTCTTTAATGTGGCAGCACAGCGACTACGCACAGAAGGATATGAA
AAGAAGAAGAAGGAGGACGGCGAAGGAAGAAACTTGGAGGGCAGCAACAC
AGATCGGCAGTCAGAAAAATAGATTTCACCAGAGAGAAAGGCGGTGATGA
AAAACAGTAGCATTCGACCGATTAAACCAGTTTCCACGCCACATCATTCA
AAGAAACAAAACAGATACCGAGAGATGATTCCCATACAGGCCAAATATCA
TTATTTTTCATATGTTGATTCCCTATTTTTGTACCAGGAAGTATGCAAGA
GCAAAGGTGGAGAGGTCATGCCGCTTTGGTGAACAATGGAAAAAACAGTA
TTGAATACGAATGTACAAATTCAAATATTTTCTCCAAACAAAAGTGGAGA
TAAAACTTACGCTTCTGTGAAAATCCTGGACGAGATATGGCAGACAGGCA
AGAGAGAGGGAGAGAATGAGAAATAGGAAAGGAAAGGAGCGAGGGAGCAG
GCTACGGCCCGTTTACCACGGCGATATTGGTTGTGTCGTTGTTCAATACA
TACATAATCTGTTCTCAGTAAGTTCCTTTGCCTTCTCAAAGAGTGCAGTG
ATCGACTTGTCCAAAGCACGCCTCAGGCCCGTCAGTCTCGAGCACCTTTC
TTACGAGCTCGTATGAGAAGGCACGGTTTGCCCGAAGAAATAGTTTTCTG
TTATCTCGACAACCGCAGACATAGTGAACACCAATGCAGCTGTCTGTCGT
TATATGGGGCTACGCACCGCATGTATAGGAGAGCCCGGAGTAGTATGGTT
CGTTTCTACCTGAAATGATTCTCCAATTGGATGTTCTTGTCCTGCACCAA
AAAGGGAACCAACCCCCCTCCCTGACAGTCACTTGTAATTTTGTCGACCA
CTTTTCTTTCGATTTCTTGATCTGTGTCGGTCGCCGAGAAAACATGAGGT
AGTGTCGGCGATCAGCGATCCTCCCTTCCTCCCCCCTCTCGCATTCCCTC
CCTCCCTCTTTCCCTATTGCTGATTAGAGATAGTAGGAGAAGGATAAAAA
GCCATCCTTCTTTCCTCTGTTCATT back to topCoding sequence (CDS) from alignment at scaffold_2:353323..356197- >mRNA_752 ID=mRNA_752|Name=jgi.p|Nanoce1779_2|574015|organism=Nannochloropsis oceanica|type=CDS|length=2079bp|location=Sequence derived from alignment at scaffold_2:353323..356197- (Nannochloropsis oceanica)
TGTACGAATGATGTCTGATGTGATGGACAAGCCCAAGGTGAGCCCGGCCT
TTTCTACTTCCCCCCCGACCGGTGGCGAGAATAAGGGCGGGGCCTTGGTG
CCTATCAACACGCAGACTATCGAGACGAGCGCCGCGATCGTAAGCACCTC
TGCGGGGATTGTTTTCCTGGGCCCGTTGTTGGGTGTGCTTCTGGGCTTGA
TCACCAATTATGCAGCCAAGGCTGATAATGAGGTCGGGGAGGCTGCGCGT
GGGGTGGGGAAGACGGCGTTGGAGGTGTTCAATTACATTGCCAAGGTTAA
TAGCAAGTATCAAATTGGGGCTAAGGTCTCGGACTCGGCCTCGTCGTTGG
TGGCGAAGCTGAAGGAGAATGAGGGGGAAGATTCGGTCGTATCGAAACTG
GAGGAGACCCTTGAGACGACCAAGACGAAGTTGACCGATTTAGATGAGCA
GTACGATCTGGTGACCAAAGCGAAGAGTGCAGTGGGCCTGGCGGTAGACT
TCAGCAACACGGCTATTGACAAGGCATTGGAGTTGAACGAGAAGTACGCC
CTGGTTGACAAGACTACGGATGCGGTCAAGAAGGCCGTGAACAAGGCAAA
GGACTCGATTTAAGCCCCGCCCGCATGCCAAGGGGATGGTCCGACAACTC
TTCCTTTTGGCACTGTTACCAGCAGTCGCTGTGGCCTTCATGGTGTACGA
ATGATGTCTGATGTGATGGACAAGCCCAAGGTGAGCCCGGCCTTTTCTAC
TTCCCCCCCGACCGGTGGCGAGAATAAGGGCGGGGCCTTGGTGCCTATCA
ACACGCAGACTATCGAGACGAGCGCCGCGATCGTAAGCACCTCTGCGGGG
ATTGTTTTCCTGGGCCCGTTGTTGGGTGTGCTTCTGGGCTTGATCACCAA
TTATGCAGCCAAGGCTGATAATGAGGTCGGGGAGGCTGCGCGTGGGGTGG
GGAAGACGGCGTTGGAGGTGTTCAATTACATTGCCAAGGTTAATAGCAAG
TATCAAATTGGGGCTAAGGTCTCGGACTCGGCCTCGTCGTTGGTGGCGAA
GCTGAAGGAGAATGAGGGGGAAGATTCGGTCGTATCGAAACTGGAGGAGA
CCCTTGAGACGACCAAGACGAAGTTGACCGATTTAGATGAGCAGTACGAT
CTGGTGACCAAAGCGAAGAGTGCAGTGGGCCTGGCGGTAGACTTCAGCAA
CACGGCTATTGACAAGGCATTGGAGTTGAACGAGAAGTACGCCCTGGTTG
ACAAGACTACGGATGCGGTCAAGAAGGCCGTGAACAAGGCAAAGGACTCG
ATTTAAGCCCCGCCCGCATGCCAAGGGGATGGTCCGACAACTCTTCCTTT
TGGCACTGTTACCAGCAGTCGCTGTGGCCTTCATGGTGTACGAATGATGT
CTGATGTGATGGACAAGCCCAAGGTGAGCCCGGCCTTTTCTACTTCCCCC
CCGACCGGTGGCGAGAATAAGGGCGGGGCCTTGGTGCCTATCAACACGCA
GACTATCGAGACGAGCGCCGCGATCGTAAGCACCTCTGCGGGGATTGTTT
TCCTGGGCCCGTTGTTGGGTGTGCTTCTGGGCTTGATCACCAATTATGCA
GCCAAGGCTGATAATGAGGTCGGGGAGGCTGCGCGTGGGGTGGGGAAGAC
GGCGTTGGAGGTGTTCAATTACATTGCCAAGGTTAATAGCAAGTATCAAA
TTGGGGCTAAGGTCTCGGACTCGGCCTCGTCGTTGGTGGCGAAGCTGAAG
GAGAATGAGGGGGAAGATTCGGTCGTATCGAAACTGGAGGAGACCCTTGA
GACGACCAAGACGAAGTTGACCGATTTAGATGAGCAGTACGATCTGGTGA
CCAAAGCGAAGAGTGCAGTGGGCCTGGCGGTAGACTTCAGCAACACGGCT
ATTGACAAGGCATTGGAGTTGAACGAGAAGTACGCCCTGGTTGACAAGAC
TACGGATGCGGTCAAGAAGGCCGTGAACAAGGCAAAGGACTCGATTTAAG
CCCCGCCCGCATGCCAAGGGGATGGTCCGACAACTCTTCCTTTTGGCACT
GTTACCAGCAGTCGCTGTGGCCTTCATGG back to top
|