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Properties
| Property Name | Value |
|---|
| TranscriptId | 545367 |
| Track | FilteredModels2 |
| ProteinId | 545281 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_20 | supercontig | scaffold_20:160604..162992 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_7518 ID=mRNA_7518|Name=jgi.p|Nanoce1779_2|545281|organism=Nannochloropsis oceanica|type=mRNA|length=2158bp
ACAGCGAGCGTCCTGTCATTAATATACATGTCAGCGGATCCAAGTCTGGT
TGGATCGTAGCTTTATCTGTAAAACGTTGGCAGACGCACCAAGCCAAGCC
AAATCGGAAATCTGGCGTGGCAATCAAGTATCAAACCAGCACTTAGTCAA
ACACACGCGAGTGGACAGCTGCACGCACATCAGCCCTAGCCGCGCACAAA
CTAACCCTAGCTAGCATGCGAGGGGTGCTGGCTTTGGCCACTGTTGCCGG
TACAGGCGTCATTTTCATGGCTGGCGGGGTAACATCCCTTGTTGTCGAGC
AGCCCTGCTGTTCGAAGCATCTGCATGTCCCCGCCGCGTTTGGTCCGGAC
ATCCTTTCCCTGGATTCCCCTATTCGTTCCCGCCAGCTCTTCGTCGTTGA
ACCGGAAGACGCCTGCTCCGACCTAATCTTTCCCACGAAATTCAGCGCCT
TGCCCCAGCCATCCTCTTCCTCTTCCTCTTCATTGAGAGGGAAAGTCGCC
TTGATCAAAAGGGACGGATGCAATTTCACGGAAAAGATTTGGCGGGCCCA
GCAAGCGCAAGCCGCTGCCGCCATAGTGTACGACTCGGTGGATCGAGAGA
AATGGGGCACCATCATGTCAGGCACCGACGAATGGACCTCCCGCATCACC
ATCCCCTCTGTTTTCGTCTCCTACTCCACGGGACTAGCCCTCAAGAATGC
CGCACAGCAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTATCGAC
AGAAGCAACTCGATGGTGGTAGCGTCGTGTTGGTCACCATCAACGACACC
GGGCACGTCAAACCCAAAACGAAACAGATTGGTCCCATCGAAACACTGGC
AACATACGTGGTAGTCTCCCTTGTCCTCCTCTCCTTCTCGGGCTGCTGCG
GCTTACTGCTTGCCCTCTGTGTCACCTGCTACCAGCGTGCGTTTCGACAG
CGGGCCTTGCGGGGACTCCGGGTGCAGAAATATAGAAGGAAGAAGCCTGT
CGCTGGGAAGCCGTCGCCACAGCAGCCGCTGGTAGCTCACAGCAGCAGCG
ACAGCCGCAGTAGCAGCAATAGTAATTGTAGTAATGGTACCCATACCTCT
GCTTCTTTGCTGGCGCCAGGTGGCAGTAATCGCAGCAGCAGCAGCAGCAG
CAGCCGCTGCAGCGCGTGGGGCCTGCCAAATCTGCGTCGACTTTTCCAGA
AGTCACAACCACAACCGCAGCAGCAGCAGCGACGGAAACATGATTCGTGG
ATTGATCCCGCAGCAGCGCAATATACAGCAGCAGGGACAGCAGCAGGAGC
AGCAGGAGCAGGAGCAGGAGCAAGAGTAGGAGCACCAGCAGCCGAAGGAA
GAGTATCGGGAGGAGCGAAAGGGGCGGAATGGGGGGAGAGGGACGGAGAG
GACGACCAAACGACGTGTGCTATCTGCCTGGATGAATATGAGGATGGGGA
CCTCCTGCGATTCCTCCCCTGTCATCACCGGTACCATGACAGGTGTATTT
TACCCTGGTTATTGGAAAAGTCAGAGATGTGCCCAATGTGTAAGCGACCT
TGTTTCTCCCCTGCCGCCCCTCAGGTGGCTCGTGCGGTTGCGGGTGGTAG
TGAAGGAGGGGAAGTGGAAGGGTCTTCATCTTCTACATTGTTGGGAGGAG
AAGGGGGACGAGGGGGACGAGAGATGGAGGGAGAAGGGACAAGAGGGGCC
TATGCCAACACATTGGACGTGCAGATTTTGGATGAGGTGGTTTTATTTTT
GACTAACAATTTGTCATTGATGGCCATGCTGGTGGTGGGGGTTGTGACAT
GCTGTGTGTTGTTGGGGGCGGTGGCCTTGTTGCAGCCGGACGCTTGAGTT
TGAGTGCGAGGGGGGATAACGAAGGTTGGTTGACGAAGGTATTTTTTTTC
TGGGAAATGACACAAAAGACAAGACACGGAGAAAAGGATTTACATAGAGT
ACAGAAATAAACAGTAATAAACAGATAGACCTGACTTGCAGAGGAAGAGT
GTATATTTTCAACAGGAGTGGAGTAAGAAGCGGATGGTTAGGGGTGGTTC
ACACACTTGCAGCACGTGTGTCATCTTGTCCATGACGGGTAGGTGGGTAG
GGGTAGGGCTGTGGATAAACGCAAAGGAACATTAACAAAAGAAGAAATTT
GGACAGGG back to topprotein sequence of jgi.p|Nanoce1779_2|545281 >mRNA_7518-protein ID=mRNA_7518-protein|Name=jgi.p|Nanoce1779_2|545281|organism=Nannochloropsis oceanica|type=polypeptide|length=544bp
MRGVLALATVAGTGVIFMAGGVTSLVVEQPCCSKHLHVPAAFGPDILSLD
SPIRSRQLFVVEPEDACSDLIFPTKFSALPQPSSSSSSSLRGKVALIKRD
GCNFTEKIWRAQQAQAAAAIVYDSVDREKWGTIMSGTDEWTSRITIPSVF
VSYSTGLALKNAAQQQQQQQQQQQQQYRQKQLDGGSVVLVTINDTGHVKP
KTKQIGPIETLATYVVVSLVLLSFSGCCGLLLALCVTCYQRAFRQRALRG
LRVQKYRRKKPVAGKPSPQQPLVAHSSSDSRSSSNSNCSNGTHTSASLLA
PGGSNRSSSSSSSRCSAWGLPNLRRLFQKSQPQPQQQQRRKHDSWIDPAA
AQYTAAGTAAGAAGAGAGARVGAPAAEGRVSGGAKGAEWGERDGEDDQTT
CAICLDEYEDGDLLRFLPCHHRYHDRCILPWLLEKSEMCPMCKRPCFSPA
APQVARAVAGGSEGGEVEGSSSSTLLGGEGGRGGREMEGEGTRGAYANTL
DVQILDEVVLFLTNNLSLMAMLVVGVVTCCVLLGAVALLQPDA* back to topmRNA from alignment at scaffold_20:160604..162992- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_7518 ID=mRNA_7518|Name=jgi.p|Nanoce1779_2|545281|organism=Nannochloropsis oceanica|type=mRNA|length=2389bp|location=Sequence derived from alignment at scaffold_20:160604..162992- (Nannochloropsis oceanica)
ACAGCGAGCGTCCTGTCATTAATATACATGTCAGCGGATCCAAGTCTGGT
TGGATCGTAGCTTTATCTGTAAAACGTTGGCAGACGCACCAAGCCAAGCC
AAATCGGAAATCTGGCGTGGCAATCAAGTATCAAACCAGCACTTAGTCAA
ACACACGCGAGTGGACAGCTGCACGCACATCAGCCCTAGCCGCGCACAAA
CTAACCCTAGCTAGCATGCGAGGGGTGCTGGCTTTGGCCACTGTTGCCGG
TACAGGCGTCATTTTCATGGCTGGCGGGGTAACATCCCTTGTTGTCGAGC
AGCCCTGCTGTTCGAAGCATCTGCATGTGTAAGTCTCTCTGTTTCTTCTT
TCTTGTATGTGCGTGTCCTACTCGCCAGCTGTTGCATGGTCTTTTACGAA
TAAGAAGCCTCCGCTCTATCCCTTCTCGTCCCTCCCATCATCCTCCTCTC
ACTCAATCCTCTCCCCGGCTTCACAAACAGCCTGTTTTATCAATCCTCTT
CCGAAAACTCACACGCCCTTCTCCCTGATCCTTTTCCACCCATTTACACA
CGTGCGTAGCCCCGCCGCGTTTGGTCCGGACATCCTTTCCCTGGATTCCC
CTATTCGTTCCCGCCAGCTCTTCGTCGTTGAACCGGAAGACGCCTGCTCC
GACCTAATCTTTCCCACGAAATTCAGCGCCTTGCCCCAGCCATCCTCTTC
CTCTTCCTCTTCATTGAGAGGGAAAGTCGCCTTGATCAAAAGGGACGGAT
GCAATTTCACGGAAAAGATTTGGCGGGCCCAGCAAGCGCAAGCCGCTGCC
GCCATAGTGTACGACTCGGTGGATCGAGAGAAATGGGGCACCATCATGTC
AGGCACCGACGAATGGACCTCCCGCATCACCATCCCCTCTGTTTTCGTCT
CCTACTCCACGGGACTAGCCCTCAAGAATGCCGCACAGCAACAACAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGTATCGACAGAAGCAACTCGATGGTGG
TAGCGTCGTGTTGGTCACCATCAACGACACCGGGCACGTCAAACCCAAAA
CGAAACAGATTGGTCCCATCGAAACACTGGCAACATACGTGGTAGTCTCC
CTTGTCCTCCTCTCCTTCTCGGGCTGCTGCGGCTTACTGCTTGCCCTCTG
TGTCACCTGCTACCAGCGTGCGTTTCGACAGCGGGCCTTGCGGGGACTCC
GGGTGCAGAAATATAGAAGGAAGAAGCCTGTCGCTGGGAAGCCGTCGCCA
CAGCAGCCGCTGGTAGCTCACAGCAGCAGCGACAGCCGCAGTAGCAGCAA
TAGTAATTGTAGTAATGGTACCCATACCTCTGCTTCTTTGCTGGCGCCAG
GTGGCAGTAATCGCAGCAGCAGCAGCAGCAGCAGCCGCTGCAGCGCGTGG
GGCCTGCCAAATCTGCGTCGACTTTTCCAGAAGTCACAACCACAACCGCA
GCAGCAGCAGCGACGGAAACATGATTCGTGGATTGATCCCGCAGCAGCGC
AATATACAGCAGCAGGGACAGCAGCAGGAGCAGCAGGAGCAGGAGCAGGA
GCAAGAGTAGGAGCACCAGCAGCCGAAGGAAGAGTATCGGGAGGAGCGAA
AGGGGCGGAATGGGGGGAGAGGGACGGAGAGGACGACCAAACGACGTGTG
CTATCTGCCTGGATGAATATGAGGATGGGGACCTCCTGCGATTCCTCCCC
TGTCATCACCGGTACCATGACAGGTGTATTTTACCCTGGTTATTGGAAAA
GTCAGAGATGTGCCCAATGTGTAAGCGACCTTGTTTCTCCCCTGCCGCCC
CTCAGGTGGCTCGTGCGGTTGCGGGTGGTAGTGAAGGAGGGGAAGTGGAA
GGGTCTTCATCTTCTACATTGTTGGGAGGAGAAGGGGGACGAGGGGGACG
AGAGATGGAGGGAGAAGGGACAAGAGGGGCCTATGCCAACACATTGGACG
TGCAGATTTTGGATGAGGTGGTTTTATTTTTGACTAACAATTTGTCATTG
ATGGCCATGCTGGTGGTGGGGGTTGTGACATGCTGTGTGTTGTTGGGGGC
GGTGGCCTTGTTGCAGCCGGACGCTTGAGTTTGAGTGCGAGGGGGGATAA
CGAAGGTTGGTTGACGAAGGTATTTTTTTTCTGGGAAATGACACAAAAGA
CAAGACACGGAGAAAAGGATTTACATAGAGTACAGAAATAAACAGTAATA
AACAGATAGACCTGACTTGCAGAGGAAGAGTGTATATTTTCAACAGGAGT
GGAGTAAGAAGCGGATGGTTAGGGGTGGTTCACACACTTGCAGCACGTGT
GTCATCTTGTCCATGACGGGTAGGTGGGTAGGGGTAGGGCTGTGGATAAA
CGCAAAGGAACATTAACAAAAGAAGAAATTTGGACAGGG back to topCoding sequence (CDS) from alignment at scaffold_20:160604..162992- >mRNA_7518 ID=mRNA_7518|Name=jgi.p|Nanoce1779_2|545281|organism=Nannochloropsis oceanica|type=CDS|length=3264bp|location=Sequence derived from alignment at scaffold_20:160604..162992- (Nannochloropsis oceanica)
CCCCGCCGCGTTTGGTCCGGACATCCTTTCCCTGGATTCCCCTATTCGTT
CCCGCCAGCTCTTCGTCGTTGAACCGGAAGACGCCTGCTCCGACCTAATC
TTTCCCACGAAATTCAGCGCCTTGCCCCAGCCATCCTCTTCCTCTTCCTC
TTCATTGAGAGGGAAAGTCGCCTTGATCAAAAGGGACGGATGCAATTTCA
CGGAAAAGATTTGGCGGGCCCAGCAAGCGCAAGCCGCTGCCGCCATAGTG
TACGACTCGGTGGATCGAGAGAAATGGGGCACCATCATGTCAGGCACCGA
CGAATGGACCTCCCGCATCACCATCCCCTCTGTTTTCGTCTCCTACTCCA
CGGGACTAGCCCTCAAGAATGCCGCACAGCAACAACAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGTATCGACAGAAGCAACTCGATGGTGGTAGCGTCGT
GTTGGTCACCATCAACGACACCGGGCACGTCAAACCCAAAACGAAACAGA
TTGGTCCCATCGAAACACTGGCAACATACGTGGTAGTCTCCCTTGTCCTC
CTCTCCTTCTCGGGCTGCTGCGGCTTACTGCTTGCCCTCTGTGTCACCTG
CTACCAGCGTGCGTTTCGACAGCGGGCCTTGCGGGGACTCCGGGTGCAGA
AATATAGAAGGAAGAAGCCTGTCGCTGGGAAGCCGTCGCCACAGCAGCCG
CTGGTAGCTCACAGCAGCAGCGACAGCCGCAGTAGCAGCAATAGTAATTG
TAGTAATGGTACCCATACCTCTGCTTCTTTGCTGGCGCCAGGTGGCAGTA
ATCGCAGCAGCAGCAGCAGCAGCAGCCGCTGCAGCGCGTGGGGCCTGCCA
AATCTGCGTCGACTTTTCCAGAAGTCACAACCACAACCGCAGCAGCAGCA
GCGACGGAAACATGATTCGTGGATTGATCCCGCAGCAGCGCAATATACAG
CAGCAGGGACAGCAGCAGGAGCAGCAGGAGCAGGAGCAGGAGCAAGAGTA
GGAGCACCAGCAGCCGAAGGAAGAGTATCGGGAGGAGCGAAAGGGGCGGA
ATGGGGGGAGAGGGACGGAGAGGACGACCAAACGACGTGTGCTATCTGCC
TGGATGAATATGAGGATGGGGACCTCCTGCGATTCCTCCCCTGTCATCAC
CGGTACCATGACAGGTGTATTTTACCCTGGTTATTGGAAAAGTCAGAGAT
GTGCCCAATGTGTAAGCGACCTTGTTTCTCCCCTGCCGCCCCTCAGGTGG
CTCGTGCGGTTGCGGGTGGTAGTGAAGGAGGGGAAGTGGAAGGGTCTTCA
TCTTCTACATTGTTGGGAGGAGAAGGGGGACGAGGGGGACGAGAGATGGA
GGGAGAAGGGACAAGAGGGGCCTATGCCAACACATTGGACGTGCAGATTT
TGGATGAGGTGGTTTTATTTTTGACTAACAATTTGTCATTGATGGCCATG
CTGGTGGTGGGGGTTGTGACATGCTGTGTGTTGTTGGGGGCGGTGGCCTT
GTTGCAGCCGGACGCTTGAATGCGAGGGGTGCTGGCTTTGGCCACTGTTG
CCGGTACAGGCGTCATTTTCATGGCTGGCGGGGTAACATCCCTTGTTGTC
GAGCAGCCCTGCTGTTCGAAGCATCTGCATGTCCCCGCCGCGTTTGGTCC
GGACATCCTTTCCCTGGATTCCCCTATTCGTTCCCGCCAGCTCTTCGTCG
TTGAACCGGAAGACGCCTGCTCCGACCTAATCTTTCCCACGAAATTCAGC
GCCTTGCCCCAGCCATCCTCTTCCTCTTCCTCTTCATTGAGAGGGAAAGT
CGCCTTGATCAAAAGGGACGGATGCAATTTCACGGAAAAGATTTGGCGGG
CCCAGCAAGCGCAAGCCGCTGCCGCCATAGTGTACGACTCGGTGGATCGA
GAGAAATGGGGCACCATCATGTCAGGCACCGACGAATGGACCTCCCGCAT
CACCATCCCCTCTGTTTTCGTCTCCTACTCCACGGGACTAGCCCTCAAGA
ATGCCGCACAGCAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAT
CGACAGAAGCAACTCGATGGTGGTAGCGTCGTGTTGGTCACCATCAACGA
CACCGGGCACGTCAAACCCAAAACGAAACAGATTGGTCCCATCGAAACAC
TGGCAACATACGTGGTAGTCTCCCTTGTCCTCCTCTCCTTCTCGGGCTGC
TGCGGCTTACTGCTTGCCCTCTGTGTCACCTGCTACCAGCGTGCGTTTCG
ACAGCGGGCCTTGCGGGGACTCCGGGTGCAGAAATATAGAAGGAAGAAGC
CTGTCGCTGGGAAGCCGTCGCCACAGCAGCCGCTGGTAGCTCACAGCAGC
AGCGACAGCCGCAGTAGCAGCAATAGTAATTGTAGTAATGGTACCCATAC
CTCTGCTTCTTTGCTGGCGCCAGGTGGCAGTAATCGCAGCAGCAGCAGCA
GCAGCAGCCGCTGCAGCGCGTGGGGCCTGCCAAATCTGCGTCGACTTTTC
CAGAAGTCACAACCACAACCGCAGCAGCAGCAGCGACGGAAACATGATTC
GTGGATTGATCCCGCAGCAGCGCAATATACAGCAGCAGGGACAGCAGCAG
GAGCAGCAGGAGCAGGAGCAGGAGCAAGAGTAGGAGCACCAGCAGCCGAA
GGAAGAGTATCGGGAGGAGCGAAAGGGGCGGAATGGGGGGAGAGGGACGG
AGAGGACGACCAAACGACGTGTGCTATCTGCCTGGATGAATATGAGGATG
GGGACCTCCTGCGATTCCTCCCCTGTCATCACCGGTACCATGACAGGTGT
ATTTTACCCTGGTTATTGGAAAAGTCAGAGATGTGCCCAATGTGTAAGCG
ACCTTGTTTCTCCCCTGCCGCCCCTCAGGTGGCTCGTGCGGTTGCGGGTG
GTAGTGAAGGAGGGGAAGTGGAAGGGTCTTCATCTTCTACATTGTTGGGA
GGAGAAGGGGGACGAGGGGGACGAGAGATGGAGGGAGAAGGGACAAGAGG
GGCCTATGCCAACACATTGGACGTGCAGATTTTGGATGAGGTGGTTTTAT
TTTTGACTAACAATTTGTCATTGATGGCCATGCTGGTGGTGGGGGTTGTG
ACATGCTGTGTGTTGTTGGGGGCGGTGGCCTTGTTGCAGCCGGACGCTTG
AATGCGAGGGGTGCTGGCTTTGGCCACTGTTGCCGGTACAGGCGTCATTT
TCATGGCTGGCGGGGTAACATCCCTTGTTGTCGAGCAGCCCTGCTGTTCG
AAGCATCTGCATGT back to top
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