jgi.p|Nanoce1779_2|531724, mRNA_7517 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|531724
Unique Name	mRNA_7517
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1071
Alignment location	scaffold_20:158131..159636 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	531810
Track	FilteredModels2
ProteinId	531724

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_20	supercontig	scaffold_20:158131..159636 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|531724	gene_7517	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|531724	mRNA_7517-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7517	CDS_7517	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_20:158131..159636-
coding sequence from alignment at scaffold_20:158131..159636-

mRNA sequence

>mRNA_7517 ID=mRNA_7517|Name=jgi.p|Nanoce1779_2|531724|organism=Nannochloropsis oceanica|type=mRNA|length=1071bp
ATGTGGGGCTACGATCAACGGCCCGTCGCCATTTCTTCTTTTCCTCTCGC
CTCTCGTCGGATAAATGACTTGATGCCTCGCCTTCTACAAGCCCTCGAAG
CAGGACCAGTAGTCTTGCGCCGGGGGCTTCGCGCGGTTAATTTTTTGGAT
ACCTTGGCTGGAGACACTCTCATCTCCTTGATGTACCAAGTGCCGTTGAT
CGAAGGAGGGAAGGAGGGAGGGCAGGGAGGCTTCTGGGCAGAGGCGGCGG
GAATATGGTTGCGGGATGGCTTGGGGTGCCAGGTTGTGGGGAGAACACGA
AAAGCGGAGGCATTGGTATCTTTTTTTCCTCCTCCATCATCATCTCCTCA
TCCTTCTCCTTGTTCACACATACCTGTTCCCACCATCCTACGTTACAAGC
AGTGGGAAGGTGCGTTTTCAAACCCCAACGGGCAGATGGCCATGCACACC
ATTCGTTGCAGCAGCAGCAGCAGCTACAAGAGCCGTCAGAACTGCAATCA
CCACTCCACCAAAAGTACTTGTGACTTACTCGAGCTGTACTGTGGAGGCG
GGAATCACACAGTGGCCTTAAGCCGAAAATTCCAGAGGGTGGTGGGGGTC
GAGATTGACAAACGGCTCGTTGCTGTGGCAAGAGAAAATTTGGTATTAAA
TGGAATCGAGAATACGACCATAATTCAGATTCCGAGCGAGAAATTTCGGG
AAGGAAGGGAGATGGAGGAGGAGGGAAGGAGGGAGGAGGATGATGAATTT
AACTTTGGAGTGGTGCTGGTGGATCCTCCTCGGGTGGGTTTAGACCGACA
TACCCGGAAGTTGATTTCTCAATACGAGCACATTTTGTACATTTCCTGTG
GACCCCATTCGATGCTGCGGGATTTGCAGGGAGAGGACGAGGAGAAGCAA
GAGCGTAGCACTGACAAGACGTATCGGTCCCTGGCTGGGTTTGGGCTGGT
GGAAACGCACGATGTTGTTGATATGTGTGTTTTGGATCATTTCCCAGGCA
CCATGCACATCGAGGCGGCTGTGCATTTGCGACGTCGACGACGACGATAC
ACAAGCCAGACGAGCAAGTGA

protein sequence of jgi.p|Nanoce1779_2|531724

>mRNA_7517-protein ID=mRNA_7517-protein|Name=jgi.p|Nanoce1779_2|531724|organism=Nannochloropsis oceanica|type=polypeptide|length=357bp
MWGYDQRPVAISSFPLASRRINDLMPRLLQALEAGPVVLRRGLRAVNFLD
TLAGDTLISLMYQVPLIEGGKEGGQGGFWAEAAGIWLRDGLGCQVVGRTR
KAEALVSFFPPPSSSPHPSPCSHIPVPTILRYKQWEGAFSNPNGQMAMHT
IRCSSSSSYKSRQNCNHHSTKSTCDLLELYCGGGNHTVALSRKFQRVVGV
EIDKRLVAVARENLVLNGIENTTIIQIPSEKFREGREMEEEGRREEDDEF
NFGVVLVDPPRVGLDRHTRKLISQYEHILYISCGPHSMLRDLQGEDEEKQ
ERSTDKTYRSLAGFGLVETHDVVDMCVLDHFPGTMHIEAAVHLRRRRRRY
TSQTSK*

mRNA from alignment at scaffold_20:158131..159636-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7517 ID=mRNA_7517|Name=jgi.p|Nanoce1779_2|531724|organism=Nannochloropsis oceanica|type=mRNA|length=1506bp|location=Sequence derived from alignment at scaffold_20:158131..159636- (Nannochloropsis oceanica)
ATGTGGGGCTACGATCAACGGCCCGTCGCCATTTCTTCTTTTCCTCTCGC
CTCTCGTCGGATAAATGACTTGATGCCTCGCCTTCTACAAGCCCTCGAAG
CAGGACCAGTAGTCTTGCGCCGGGGGCTTCGCGCGGTTAATTTTTTGGAT
ACCTTGGCTGGAGACACTCTCATCTCCTTGATGTACCAAGTGCCGTTGAT
CGAAGGAGGGAAGGAGGGAGGGCAGGGAGGCTTCTGGGCAGAGGCGGCGG
GAATATGGTTGCGGGATGGCTTGGGGTGCCAGGTTGTGGGGAGAAGTAAA
GGGAGGGTGGTGGCTGTGGATAGAGCCTATGTAACAGAAGCTTTTCATCT
CTTTCCCTGCTCATCCTCGTCCTCCTCGCCTTGCTTCTCTTCTTTCTATC
TCGGCAACAACTGCGAGGGCAAAGGGGATAAAGCACGAAAAGCGGAGGCA
TTGGTATCTTTTTTTCCTCCTCCATCATCATCTCCTCATCCTTCTCCTTG
TTCACACATACCTGTTCCCACCATCCTACGTTACAAGCAGTGGGAAGGTG
CGTTTTCAAACCCCAACGGGCAGATGGCCATGCACACCATTCGTTGGTTA
TGTGCCCGGGCGGATGCCATTCTTCTTGCTGCTGATGAGGCGAAAACGGA
GGCCGATGAAGAAGGGGGTAACAGGGCACACGAGGGTCTTGGTGGCTGCG
GCGAGAGCAAGACCGGCAGCGACAAGGGCCGAACGAACAGCCGCCTCAGC
AGCGAGAGCAGCAGCAGCAGCAGCTACAAGAGCCGTCAGAACTGCAATCA
CCACTCCACCAAAAGTACTTGTGACTTACTCGAGCTGTACTGTGGAGGCG
GGAATCACACAGTGGCCTTAAGCCGAAAATTCCAGAGGGTGGTGGGGGTC
GAGATTGACAAACGGCTCGTTGCTGTGGCAAGAGAAAATTTGGTATTAAA
TGGAATCGAGAATACGACCATAATTCAGATTCCGAGCGAGAAATTTCGGG
TGGAGGAACTGGGGAAATACCGACGGAAGGAGCGCGAAAAGGAAAGGAAG
GCGGCGGCGGCAGTTGTACCAGGAGAAGTAGAAGGAATGAAGGTGGGGGA
TTGCGGGAACTCGAAACAGGTGGAGGAGGAGGAGGAAGGAAGGGAGATGG
AGGAGGAGGGAAGGAGGGAGGAGGATGATGAATTTAACTTTGGAGTGGTG
CTGGTGGATCCTCCTCGGGTGGGTTTAGACCGACATACCCGGAAGTTGAT
TTCTCAATACGAGCACATTTTGTACATTTCCTGTGGACCCCATTCGATGC
TGCGGGATTTGCAGGGAGAGGACGAGGAGAAGCAAGAGCGTAGCACTGAC
AAGACGTATCGGTCCCTGGCTGGGTTTGGGCTGGTGGAAACGCACGATGT
TGTTGATATGTGTGTTTTGGATCATTTCCCAGGCACCATGCACATCGAGG
CGGCTGTGCATTTGCGACGTCGACGACGACGATACACAAGCCAGACGAGC
AAGTGA

Coding sequence (CDS) from alignment at scaffold_20:158131..159636-

>mRNA_7517 ID=mRNA_7517|Name=jgi.p|Nanoce1779_2|531724|organism=Nannochloropsis oceanica|type=CDS|length=4284bp|location=Sequence derived from alignment at scaffold_20:158131..159636- (Nannochloropsis oceanica)
GAAGGAAGGGAGATGGAGGAGGAGGGAAGGAGGGAGGAGGATGATGAATT
TAACTTTGGAGTGGTGCTGGTGGATCCTCCTCGGGTGGGTTTAGACCGAC
ATACCCGGAAGTTGATTTCTCAATACGAGCACATTTTGTACATTTCCTGT
GGACCCCATTCGATGCTGCGGGATTTGCAGGGAGAGGACGAGGAGAAGCA
AGAGCGTAGCACTGACAAGACGTATCGGTCCCTGGCTGGGTTTGGGCTGG
TGGAAACGCACGATGTTGTTGATATGTGTGTTTTGGATCATTTCCCAGGC
ACCATGCACATCGAGGCGGCTGTGCATTTGCGACGTCGACGACGACGATA
CACAAGCCAGACGAGCAAGTGACAGCAGCAGCAGCAGCTACAAGAGCCGT
CAGAACTGCAATCACCACTCCACCAAAAGTACTTGTGACTTACTCGAGCT
GTACTGTGGAGGCGGGAATCACACAGTGGCCTTAAGCCGAAAATTCCAGA
GGGTGGTGGGGGTCGAGATTGACAAACGGCTCGTTGCTGTGGCAAGAGAA
AATTTGGTATTAAATGGAATCGAGAATACGACCATAATTCAGATTCCGAG
CGAGAAATTTCGGCACGAAAAGCGGAGGCATTGGTATCTTTTTTTCCTCC
TCCATCATCATCTCCTCATCCTTCTCCTTGTTCACACATACCTGTTCCCA
CCATCCTACGTTACAAGCAGTGGGAAGGTGCGTTTTCAAACCCCAACGGG
CAGATGGCCATGCACACCATTCGTTGATGTGGGGCTACGATCAACGGCCC
GTCGCCATTTCTTCTTTTCCTCTCGCCTCTCGTCGGATAAATGACTTGAT
GCCTCGCCTTCTACAAGCCCTCGAAGCAGGACCAGTAGTCTTGCGCCGGG
GGCTTCGCGCGGTTAATTTTTTGGATACCTTGGCTGGAGACACTCTCATC
TCCTTGATGTACCAAGTGCCGTTGATCGAAGGAGGGAAGGAGGGAGGGCA
GGGAGGCTTCTGGGCAGAGGCGGCGGGAATATGGTTGCGGGATGGCTTGG
GGTGCCAGGTTGTGGGGAGAAGAAGGAAGGGAGATGGAGGAGGAGGGAAG
GAGGGAGGAGGATGATGAATTTAACTTTGGAGTGGTGCTGGTGGATCCTC
CTCGGGTGGGTTTAGACCGACATACCCGGAAGTTGATTTCTCAATACGAG
CACATTTTGTACATTTCCTGTGGACCCCATTCGATGCTGCGGGATTTGCA
GGGAGAGGACGAGGAGAAGCAAGAGCGTAGCACTGACAAGACGTATCGGT
CCCTGGCTGGGTTTGGGCTGGTGGAAACGCACGATGTTGTTGATATGTGT
GTTTTGGATCATTTCCCAGGCACCATGCACATCGAGGCGGCTGTGCATTT
GCGACGTCGACGACGACGATACACAAGCCAGACGAGCAAGTGACAGCAGC
AGCAGCAGCTACAAGAGCCGTCAGAACTGCAATCACCACTCCACCAAAAG
TACTTGTGACTTACTCGAGCTGTACTGTGGAGGCGGGAATCACACAGTGG
CCTTAAGCCGAAAATTCCAGAGGGTGGTGGGGGTCGAGATTGACAAACGG
CTCGTTGCTGTGGCAAGAGAAAATTTGGTATTAAATGGAATCGAGAATAC
GACCATAATTCAGATTCCGAGCGAGAAATTTCGGCACGAAAAGCGGAGGC
ATTGGTATCTTTTTTTCCTCCTCCATCATCATCTCCTCATCCTTCTCCTT
GTTCACACATACCTGTTCCCACCATCCTACGTTACAAGCAGTGGGAAGGT
GCGTTTTCAAACCCCAACGGGCAGATGGCCATGCACACCATTCGTTGATG
TGGGGCTACGATCAACGGCCCGTCGCCATTTCTTCTTTTCCTCTCGCCTC
TCGTCGGATAAATGACTTGATGCCTCGCCTTCTACAAGCCCTCGAAGCAG
GACCAGTAGTCTTGCGCCGGGGGCTTCGCGCGGTTAATTTTTTGGATACC
TTGGCTGGAGACACTCTCATCTCCTTGATGTACCAAGTGCCGTTGATCGA
AGGAGGGAAGGAGGGAGGGCAGGGAGGCTTCTGGGCAGAGGCGGCGGGAA
TATGGTTGCGGGATGGCTTGGGGTGCCAGGTTGTGGGGAGAAGAAGGAAG
GGAGATGGAGGAGGAGGGAAGGAGGGAGGAGGATGATGAATTTAACTTTG
GAGTGGTGCTGGTGGATCCTCCTCGGGTGGGTTTAGACCGACATACCCGG
AAGTTGATTTCTCAATACGAGCACATTTTGTACATTTCCTGTGGACCCCA
TTCGATGCTGCGGGATTTGCAGGGAGAGGACGAGGAGAAGCAAGAGCGTA
GCACTGACAAGACGTATCGGTCCCTGGCTGGGTTTGGGCTGGTGGAAACG
CACGATGTTGTTGATATGTGTGTTTTGGATCATTTCCCAGGCACCATGCA
CATCGAGGCGGCTGTGCATTTGCGACGTCGACGACGACGATACACAAGCC
AGACGAGCAAGTGACAGCAGCAGCAGCAGCTACAAGAGCCGTCAGAACTG
CAATCACCACTCCACCAAAAGTACTTGTGACTTACTCGAGCTGTACTGTG
GAGGCGGGAATCACACAGTGGCCTTAAGCCGAAAATTCCAGAGGGTGGTG
GGGGTCGAGATTGACAAACGGCTCGTTGCTGTGGCAAGAGAAAATTTGGT
ATTAAATGGAATCGAGAATACGACCATAATTCAGATTCCGAGCGAGAAAT
TTCGGCACGAAAAGCGGAGGCATTGGTATCTTTTTTTCCTCCTCCATCAT
CATCTCCTCATCCTTCTCCTTGTTCACACATACCTGTTCCCACCATCCTA
CGTTACAAGCAGTGGGAAGGTGCGTTTTCAAACCCCAACGGGCAGATGGC
CATGCACACCATTCGTTGATGTGGGGCTACGATCAACGGCCCGTCGCCAT
TTCTTCTTTTCCTCTCGCCTCTCGTCGGATAAATGACTTGATGCCTCGCC
TTCTACAAGCCCTCGAAGCAGGACCAGTAGTCTTGCGCCGGGGGCTTCGC
GCGGTTAATTTTTTGGATACCTTGGCTGGAGACACTCTCATCTCCTTGAT
GTACCAAGTGCCGTTGATCGAAGGAGGGAAGGAGGGAGGGCAGGGAGGCT
TCTGGGCAGAGGCGGCGGGAATATGGTTGCGGGATGGCTTGGGGTGCCAG
GTTGTGGGGAGAAGAAGGAAGGGAGATGGAGGAGGAGGGAAGGAGGGAGG
AGGATGATGAATTTAACTTTGGAGTGGTGCTGGTGGATCCTCCTCGGGTG
GGTTTAGACCGACATACCCGGAAGTTGATTTCTCAATACGAGCACATTTT
GTACATTTCCTGTGGACCCCATTCGATGCTGCGGGATTTGCAGGGAGAGG
ACGAGGAGAAGCAAGAGCGTAGCACTGACAAGACGTATCGGTCCCTGGCT
GGGTTTGGGCTGGTGGAAACGCACGATGTTGTTGATATGTGTGTTTTGGA
TCATTTCCCAGGCACCATGCACATCGAGGCGGCTGTGCATTTGCGACGTC
GACGACGACGATACACAAGCCAGACGAGCAAGTGACAGCAGCAGCAGCAG
CTACAAGAGCCGTCAGAACTGCAATCACCACTCCACCAAAAGTACTTGTG
ACTTACTCGAGCTGTACTGTGGAGGCGGGAATCACACAGTGGCCTTAAGC
CGAAAATTCCAGAGGGTGGTGGGGGTCGAGATTGACAAACGGCTCGTTGC
TGTGGCAAGAGAAAATTTGGTATTAAATGGAATCGAGAATACGACCATAA
TTCAGATTCCGAGCGAGAAATTTCGGCACGAAAAGCGGAGGCATTGGTAT
CTTTTTTTCCTCCTCCATCATCATCTCCTCATCCTTCTCCTTGTTCACAC
ATACCTGTTCCCACCATCCTACGTTACAAGCAGTGGGAAGGTGCGTTTTC
AAACCCCAACGGGCAGATGGCCATGCACACCATTCGTTGATGTGGGGCTA
CGATCAACGGCCCGTCGCCATTTCTTCTTTTCCTCTCGCCTCTCGTCGGA
TAAATGACTTGATGCCTCGCCTTCTACAAGCCCTCGAAGCAGGACCAGTA
GTCTTGCGCCGGGGGCTTCGCGCGGTTAATTTTTTGGATACCTTGGCTGG
AGACACTCTCATCTCCTTGATGTACCAAGTGCCGTTGATCGAAGGAGGGA
AGGAGGGAGGGCAGGGAGGCTTCTGGGCAGAGGCGGCGGGAATATGGTTG
CGGGATGGCTTGGGGTGCCAGGTTGTGGGGAGAA

Synonyms

Publications