jgi.p|Nanoce1779_2|599037, mRNA_7516 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599037
Unique NamemRNA_7516
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1709
Alignment locationscaffold_20:156024..158008 +

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Properties
Property NameValue
TranscriptId599123
TrackFilteredModels2
ProteinId599037
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:156024..158008 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599037gene_7516Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599037mRNA_7516-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7516CDS_7516Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7516 ID=mRNA_7516|Name=jgi.p|Nanoce1779_2|599037|organism=Nannochloropsis oceanica|type=mRNA|length=1709bp
AGCGTATACAGGCACAAGCTGTGTGCTCATCTTCGGCATAGGATGAGCGG
CTGCCGTCCTATGGTTAGCAGCAGGGTCTTAGTCGCCATCCTGATTATCA
TGTCTACCTCCTGTCACTCCCATGCCTGGGTATTAATGCCTGGACGAGCG
CGCAATAGCCTACAACCCACTGCATGGCGTCTGTCGATGACGTCCAGCAG
CGACTCTCTGTCCCGTCGCGCCTTGGTCCAGTCATCCCTCGGCGTCGCCG
CGACAGGCCTCCTCGGCTCTTCCACCCTCGGTGGAGGGCATGTGCGTCGG
GCGTCTGCCGCCACTCTGTCGGCTTCGTCTGAATTTTCCTTACCAGACGA
CGCGTACACTCTGCTTGGGGGGGACATGAAAAGCTGCAAGATCCTGAACG
GGATGTGGCAACTTTCGGGCGGGCATGGCTATCGGCCGCAGGTGGGGCCG
GCTGTTAGCGATATGCGGAAGTCGTTTGAGACTGGATTCAACACTTTTGA
TACTGCAGACATCTACGGCGGCGCGGAGGACGTGGTTGGGAACTACAAAA
GGGCGTATGGAAGCAAGGACGACCAAGGGCTATTCTACACCAAGTGAGTA
AAGTTTGGTAGGGGAAAGGGGAGGGTTGTAAAGAATAAGTAAGTAAGGAA
GGAAGGAAGAGCTCCCGCTGGCAATCCACAGAGTTTTGAGATATTCACTG
GCATACTTACCCTCCCTCAATCCTTTCCTTACCCTCCTCCCTCCCCTCGC
TTCCCTGCCTCTCCTCGCTCCCCTTTTTCTTTTCCCTCTCTTAGATGGGT
ACCCCGCCCCGAGCGCATCAGCCGCGCTGCCACAAAGGAAGCGATTGGTC
GTAGTATGAAAAGGATGGATACGACTCAACTGGACTTGCTCCAATTCCAC
TGGTGGGAGTATGGTTATCCTTACTACATGGACGCCTTGCAGTACCTCCA
GGAGATTCAGCAAGATGGAGGAATCCGTCACTTAGCCCTCACCAACTTCG
ATACGAAACACATGAACGAAATCTATGACTCGGGCATCAAAATCGTGAGC
AACCAAGTCCAATACTCCCTGCTTGATCAGAGGCCCAATGTCCTTATGGC
CCCGGCCATGCTGGAACGTAACATGCAAATTCTGGCGTACGGGACGTTGC
TGGGAGGGTTCTTCTCGGATAACTGGAAGGGGAAAGATGACCCGAAAGGC
TTCGAGACTGTCTCCCAACAGAAGTATTACAACATGATTCGTGCATGGGG
TGATTGGGCGCTATTCCAACAATTGCTGCTGGCGATGGAGAAGGTGGGGA
AGAAGCACGAGGTGTCCATCAGCAACGTGGCTGTGCGCTGGGTGTTAGAG
CAGCCGGCTGTAGGCGGAGCCATCGTCGGGTGCCGCTTTGGGTTGAAGGG
AAAGGAACACGCAGAAGATAACAAACGGGTGTTCAGTTTTAAGTTGGATG
AGGAGGATAAAATGGCATTGCAGGCGGTGACGAGTAAAGCGAGGGATCTG
ATGAAGGTTATTGGGGATTGCGGAGCGGAGTATCGCCGGGCTTGAGGCGC
CGAGGGAGAAATTAAAGGAGGAAGGGAAGGGAGGACGGACGGAAACGAAT
CGTGGGATGAGTAGTAGAAATGGGTGATTGTAAGAGAGGAGAATGTGTGT
GTGCAATTTAAACATCGTATGAAGAAGAAAAGGGGGCTCCTACCTCAAAA
AGATGTCGC
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protein sequence of jgi.p|Nanoce1779_2|599037

>mRNA_7516-protein ID=mRNA_7516-protein|Name=jgi.p|Nanoce1779_2|599037|organism=Nannochloropsis oceanica|type=polypeptide|length=230bp
MKRMDTTQLDLLQFHWWEYGYPYYMDALQYLQEIQQDGGIRHLALTNFDT
KHMNEIYDSGIKIVSNQVQYSLLDQRPNVLMAPAMLERNMQILAYGTLLG
GFFSDNWKGKDDPKGFETVSQQKYYNMIRAWGDWALFQQLLLAMEKVGKK
HEVSISNVAVRWVLEQPAVGGAIVGCRFGLKGKEHAEDNKRVFSFKLDEE
DKMALQAVTSKARDLMKVIGDCGAEYRRA*
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mRNA from alignment at scaffold_20:156024..158008+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7516 ID=mRNA_7516|Name=jgi.p|Nanoce1779_2|599037|organism=Nannochloropsis oceanica|type=mRNA|length=1985bp|location=Sequence derived from alignment at scaffold_20:156024..158008+ (Nannochloropsis oceanica)
AGCGTATACAGGCACAAGCTGTGTGCTCATCTTCGGCATAGGATGAGCGG
CTGCCGTCCTATGGTTAGCAGCAGGGTCTTAGTCGCCATCCTGATTATCA
TGTCTACCTCCTGTCACTCCCATGCCTGGGTATTAATGCCTGGACGAGCG
CGCAATAGCCTACAGTGAGTGCTCTACAGGCATGAGAGCAGAAGCTTAAA
ATTCCCTTCTAAATGTGCCAGTGTTTTCTTTACCCTCCTTTCCCTTCCCC
TACGTTTCAACAGACCCACTGCATGGCGTCTGTCGATGACGTCCAGCAGC
GACTCTCTGTCCCGTCGCGCCTTGGTCCAGTCATCCCTCGGCGTCGCCGC
GACAGGCCTCCTCGGCTCTTCCACCCTCGGTGGAGGGCATGTGCGTCGGG
CGTCTGCCGCCACTCTGTCGGCTTCGTCTGAATTTTCCTTACCAGACGAC
GCGTACACTCTGCTTGGGGGGGACATGAAAAGCTGCAAGATCCTGAACGG
GATGTGGCAACTTTCGGGCGGGCATGGCTATCGGCCGCAGGTGGGGCCGG
CTGTTAGCGATATGCGGAAGTCGTTTGAGACTGGATTCAACACTTTTGAT
ACTGCAGGTACAAAGAGTAGGAGGGGTTGAGGAATGTTTGAGGGAGGAGC
ATGAGGTGTCATTTGAAGCATGCTGCTCCTCCCCTTCTTAGACTTGGCGT
CCTCGTTCCTTCACAGTGTCTTCCTGTCACTTACCCTCAAACATATATCT
CATTTATTTCACTCTCTTGTGTTTCCGAACAAAGACATCTACGGCGGCGC
GGAGGACGTGGTTGGGAACTACAAAAGGGCGTATGGAAGCAAGGACGACC
AAGGGCTATTCTACACCAAGTGAGTAAAGTTTGGTAGGGGAAAGGGGAGG
GTTGTAAAGAATAAGTAAGTAAGGAAGGAAGGAAGAGCTCCCGCTGGCAA
TCCACAGAGTTTTGAGATATTCACTGGCATACTTACCCTCCCTCAATCCT
TTCCTTACCCTCCTCCCTCCCCTCGCTTCCCTGCCTCTCCTCGCTCCCCT
TTTTCTTTTCCCTCTCTTAGATGGGTACCCCGCCCCGAGCGCATCAGCCG
CGCTGCCACAAAGGAAGCGATTGGTCGTAGTATGAAAAGGATGGATACGA
CTCAACTGGACTTGCTCCAATTCCACTGGTGGGAGTATGGTTATCCTTAC
TACATGGACGCCTTGCAGTACCTCCAGGAGATTCAGCAAGATGGAGGAAT
CCGTCACTTAGCCCTCACCAACTTCGATACGAAACACATGAACGAAATCT
ATGACTCGGGCATCAAAATCGTGAGCAACCAAGTCCAATACTCCCTGCTT
GATCAGAGGCCCAATGTCCTTATGGCCCCGGCCATGCTGGAACGTAACAT
GCAAATTCTGGCGTACGGGACGTTGCTGGGAGGGTTCTTCTCGGATAACT
GGAAGGGGAAAGATGACCCGAAAGGCTTCGAGACTGTCTCCCAACAGAAG
TATTACAACATGATTCGTGCATGGGGTGATTGGGCGCTATTCCAACAATT
GCTGCTGGCGATGGAGAAGGTGGGGAAGAAGCACGAGGTGTCCATCAGCA
ACGTGGCTGTGCGCTGGGTGTTAGAGCAGCCGGCTGTAGGCGGAGCCATC
GTCGGGTGCCGCTTTGGGTTGAAGGGAAAGGAACACGCAGAAGATAACAA
ACGGGTGTTCAGTTTTAAGTTGGATGAGGAGGATAAAATGGCATTGCAGG
CGGTGACGAGTAAAGCGAGGGATCTGATGAAGGTTATTGGGGATTGCGGA
GCGGAGTATCGCCGGGCTTGAGGCGCCGAGGGAGAAATTAAAGGAGGAAG
GGAAGGGAGGACGGACGGAAACGAATCGTGGGATGAGTAGTAGAAATGGG
TGATTGTAAGAGAGGAGAATGTGTGTGTGCAATTTAAACATCGTATGAAG
AAGAAAAGGGGGCTCCTACCTCAAAAAGATGTCGC
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Coding sequence (CDS) from alignment at scaffold_20:156024..158008+

>mRNA_7516 ID=mRNA_7516|Name=jgi.p|Nanoce1779_2|599037|organism=Nannochloropsis oceanica|type=CDS|length=690bp|location=Sequence derived from alignment at scaffold_20:156024..158008+ (Nannochloropsis oceanica)
ATGAAAAGGATGGATACGACTCAACTGGACTTGCTCCAATTCCACTGGTG
GGAGTATGGTTATCCTTACTACATGGACGCCTTGCAGTACCTCCAGGAGA
TTCAGCAAGATGGAGGAATCCGTCACTTAGCCCTCACCAACTTCGATACG
AAACACATGAACGAAATCTATGACTCGGGCATCAAAATCGTGAGCAACCA
AGTCCAATACTCCCTGCTTGATCAGAGGCCCAATGTCCTTATGGCCCCGG
CCATGCTGGAACGTAACATGCAAATTCTGGCGTACGGGACGTTGCTGGGA
GGGTTCTTCTCGGATAACTGGAAGGGGAAAGATGACCCGAAAGGCTTCGA
GACTGTCTCCCAACAGAAGTATTACAACATGATTCGTGCATGGGGTGATT
GGGCGCTATTCCAACAATTGCTGCTGGCGATGGAGAAGGTGGGGAAGAAG
CACGAGGTGTCCATCAGCAACGTGGCTGTGCGCTGGGTGTTAGAGCAGCC
GGCTGTAGGCGGAGCCATCGTCGGGTGCCGCTTTGGGTTGAAGGGAAAGG
AACACGCAGAAGATAACAAACGGGTGTTCAGTTTTAAGTTGGATGAGGAG
GATAAAATGGCATTGCAGGCGGTGACGAGTAAAGCGAGGGATCTGATGAA
GGTTATTGGGGATTGCGGAGCGGAGTATCGCCGGGCTTGA
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Synonyms
Publications