jgi.p|Nanoce1779_2|672796, mRNA_7514 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|672796
Unique NamemRNA_7514
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1184
Alignment locationscaffold_20:154683..155866 -

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Properties
Property NameValue
TranscriptId672882
TrackFilteredModels2
ProteinId672796
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:154683..155866 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672796gene_7514Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672796mRNA_7514-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7514CDS_7514Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7514 ID=mRNA_7514|Name=jgi.p|Nanoce1779_2|672796|organism=Nannochloropsis oceanica|type=mRNA|length=1184bp
GCCACTACACAGCACGCAGGCACCGCAACAAGTGCAGGCACGAGCAGCAA
CACTCGTGGTTACGTGATTCCTTGTTCTGCCTTTCCATCGTGTTGCTTCC
AGACGTCCAACACATCCTCTCCTTCCTAACGCCGTCATCACACAGTACCA
GAGGCTTCATCACACAAATGGCCCTGCCACCACCGTTACCCACATCTCCA
GCGTCCTTCCTGTCCACCCCCATTCTCCGCAACATTTCCCTCGCCTTTCT
CTTCGCCACTGCACTCTCCTACCGTGGCTTGCGAAAACAATCCCTCTCCA
AAAGCGGTGCCCTGGCCGCGTGGGTCGTTGGCTTCCTGACCATGGCAACC
TCCCTACGGTTCGGAGCCCTCATGATTCTCTTCTACCAAAGCAGCAGCAT
GCTCACAAAATTCCGTTCGGAAACGAAAGCGCGATTTGAAGAAGATCACA
AGCAAGGTGGTCAACGCTCCGCGGCTCAAGTCCTCGCGTGCTCTTTCCTG
GGTACACTTGTCGCTGCTGCTTTTGCCTGCATCATCGGCGAAGACAACGA
GCCTTTGAATTTCGATAAGTATCCGCTTCGTAGTCAATTGCTTTGTGCGT
ACGTGGGGCATTATGCATGTTGTAATGGTGATACGTGGGCGTCTGAAATA
GGGATCTTGAGTCCTTCTTCCCCTCGCTTAGTAACGGTGTTTTTCCGTCG
GGTTGTGCCGCGAGGGACGAATGGAGGCATGTCGTGGACGGGCACTGGGG
CGTCAATTGCTGGCGGGGCTTTCATAGGCGTGGGGTATACGGTTGTTGGT
TTCTTGCTTGGGATCGGGGATGAGGGGAGAAGAGAGGGGTGGGTGCCGGG
TTGGATGTTTATGTGTGTGGTTGGTGCGACATGCGGGTTTTTGGGGAGTC
TGTGTGATTCTGTGTTGGGTGGGTTGCTACAACCGACGTGGTTTTGCGCG
GATAGGAAGAGGGTGGTGAAGCATCCGAGGGAGGGGGAGAAAGAGGGGGG
GAGGAGGGGAAGTGTGACTTTGATAAGTGGGATGGATATTCTGACGAACG
AACAGGTGAATGTGCTGTCGGTGCTGGTGACGACGCTTCTGGCACCGATG
TTGGGCAGATTGTTGTGGTATAGTTAGATCTATTCGCATGGACGAGAAGT
AAATCAAAAAGTAAAAGTACCTACCTTATGCAAT
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protein sequence of jgi.p|Nanoce1779_2|672796

>mRNA_7514-protein ID=mRNA_7514-protein|Name=jgi.p|Nanoce1779_2|672796|organism=Nannochloropsis oceanica|type=polypeptide|length=320bp
MALPPPLPTSPASFLSTPILRNISLAFLFATALSYRGLRKQSLSKSGALA
AWVVGFLTMATSLRFGALMILFYQSSSMLTKFRSETKARFEEDHKQGGQR
SAAQVLACSFLGTLVAAAFACIIGEDNEPLNFDKYPLRSQLLCAYVGHYA
CCNGDTWASEIGILSPSSPRLVTVFFRRVVPRGTNGGMSWTGTGASIAGG
AFIGVGYTVVGFLLGIGDEGRREGWVPGWMFMCVVGATCGFLGSLCDSVL
GGLLQPTWFCADRKRVVKHPREGEKEGGRRGSVTLISGMDILTNEQVNVL
SVLVTTLLAPMLGRLLWYS*
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mRNA from alignment at scaffold_20:154683..155866-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7514 ID=mRNA_7514|Name=jgi.p|Nanoce1779_2|672796|organism=Nannochloropsis oceanica|type=mRNA|length=1184bp|location=Sequence derived from alignment at scaffold_20:154683..155866- (Nannochloropsis oceanica)
GCCACTACACAGCACGCAGGCACCGCAACAAGTGCAGGCACGAGCAGCAA CACTCGTGGTTACGTGATTCCTTGTTCTGCCTTTCCATCGTGTTGCTTCC AGACGTCCAACACATCCTCTCCTTCCTAACGCCGTCATCACACAGTACCA GAGGCTTCATCACACAAATGGCCCTGCCACCACCGTTACCCACATCTCCA GCGTCCTTCCTGTCCACCCCCATTCTCCGCAACATTTCCCTCGCCTTTCT CTTCGCCACTGCACTCTCCTACCGTGGCTTGCGAAAACAATCCCTCTCCA AAAGCGGTGCCCTGGCCGCGTGGGTCGTTGGCTTCCTGACCATGGCAACC TCCCTACGGTTCGGAGCCCTCATGATTCTCTTCTACCAAAGCAGCAGCAT GCTCACAAAATTCCGTTCGGAAACGAAAGCGCGATTTGAAGAAGATCACA AGCAAGGTGGTCAACGCTCCGCGGCTCAAGTCCTCGCGTGCTCTTTCCTG GGTACACTTGTCGCTGCTGCTTTTGCCTGCATCATCGGCGAAGACAACGA GCCTTTGAATTTCGATAAGTATCCGCTTCGTAGTCAATTGCTTTGTGCGT ACGTGGGGCATTATGCATGTTGTAATGGTGATACGTGGGCGTCTGAAATA GGGATCTTGAGTCCTTCTTCCCCTCGCTTAGTAACGGTGTTTTTCCGTCG GGTTGTGCCGCGAGGGACGAATGGAGGCATGTCGTGGACGGGCACTGGGG CGTCAATTGCTGGCGGGGCTTTCATAGGCGTGGGGTATACGGTTGTTGGT TTCTTGCTTGGGATCGGGGATGAGGGGAGAAGAGAGGGGTGGGTGCCGGG TTGGATGTTTATGTGTGTGGTTGGTGCGACATGCGGGTTTTTGGGGAGTC TGTGTGATTCTGTGTTGGGTGGGTTGCTACAACCGACGTGGTTTTGCGCG GATAGGAAGAGGGTGGTGAAGCATCCGAGGGAGGGGGAGAAAGAGGGGGG GAGGAGGGGAAGTGTGACTTTGATAAGTGGGATGGATATTCTGACGAACG AACAGGTGAATGTGCTGTCGGTGCTGGTGACGACGCTTCTGGCACCGATG TTGGGCAGATTGTTGTGGTATAGTTAGATCTATTCGCATGGACGAGAAGT AAATCAAAAAGTAAAAGTACCTACCTTATGCAAT
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Coding sequence (CDS) from alignment at scaffold_20:154683..155866-

>mRNA_7514 ID=mRNA_7514|Name=jgi.p|Nanoce1779_2|672796|organism=Nannochloropsis oceanica|type=CDS|length=960bp|location=Sequence derived from alignment at scaffold_20:154683..155866- (Nannochloropsis oceanica)
ATGGCCCTGCCACCACCGTTACCCACATCTCCAGCGTCCTTCCTGTCCAC
CCCCATTCTCCGCAACATTTCCCTCGCCTTTCTCTTCGCCACTGCACTCT
CCTACCGTGGCTTGCGAAAACAATCCCTCTCCAAAAGCGGTGCCCTGGCC
GCGTGGGTCGTTGGCTTCCTGACCATGGCAACCTCCCTACGGTTCGGAGC
CCTCATGATTCTCTTCTACCAAAGCAGCAGCATGCTCACAAAATTCCGTT
CGGAAACGAAAGCGCGATTTGAAGAAGATCACAAGCAAGGTGGTCAACGC
TCCGCGGCTCAAGTCCTCGCGTGCTCTTTCCTGGGTACACTTGTCGCTGC
TGCTTTTGCCTGCATCATCGGCGAAGACAACGAGCCTTTGAATTTCGATA
AGTATCCGCTTCGTAGTCAATTGCTTTGTGCGTACGTGGGGCATTATGCA
TGTTGTAATGGTGATACGTGGGCGTCTGAAATAGGGATCTTGAGTCCTTC
TTCCCCTCGCTTAGTAACGGTGTTTTTCCGTCGGGTTGTGCCGCGAGGGA
CGAATGGAGGCATGTCGTGGACGGGCACTGGGGCGTCAATTGCTGGCGGG
GCTTTCATAGGCGTGGGGTATACGGTTGTTGGTTTCTTGCTTGGGATCGG
GGATGAGGGGAGAAGAGAGGGGTGGGTGCCGGGTTGGATGTTTATGTGTG
TGGTTGGTGCGACATGCGGGTTTTTGGGGAGTCTGTGTGATTCTGTGTTG
GGTGGGTTGCTACAACCGACGTGGTTTTGCGCGGATAGGAAGAGGGTGGT
GAAGCATCCGAGGGAGGGGGAGAAAGAGGGGGGGAGGAGGGGAAGTGTGA
CTTTGATAAGTGGGATGGATATTCTGACGAACGAACAGGTGAATGTGCTG
TCGGTGCTGGTGACGACGCTTCTGGCACCGATGTTGGGCAGATTGTTGTG
GTATAGTTAG
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Synonyms
Publications