jgi.p|Nanoce1779_2|599031, mRNA_7513 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599031
Unique NamemRNA_7513
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length901
Alignment locationscaffold_20:153550..154450 +

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Properties
Property NameValue
TranscriptId599117
TrackFilteredModels2
ProteinId599031
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:153550..154450 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599031gene_7513Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599031mRNA_7513-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7513CDS_7513Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7513 ID=mRNA_7513|Name=jgi.p|Nanoce1779_2|599031|organism=Nannochloropsis oceanica|type=mRNA|length=901bp
ACAGATTTTCAAAGAAGCCATGACCGCCGCCTTGGCCAGAGGCTTTGGCC
TCCCCTCCTCCCTTCTTCCTCAGATGATGAAGCGCCGTCTGCCACGTCAA
TTCAGCAGCAGCAGCACCTCGACCACCAGCACGAGCACCAACGACGACAA
AAGCAACTTTTCCTCCGGTCCCAAGATTGTGGTGCTTGGTGGGAGTGGCT
ACGTGGGGCGGCATGTGCTGCAAGCGGCCTTGAATCGAGGGGCGGACGCG
GTGAGCATCAACCGTTCTGGCAAGCCCGAAGGGGGCCAGGCGAGTGGAAG
CTGGCTCTCGCAAGTCAAGTGGGTGGCGTCCGACGTCTTTGATAGCAACT
CTTGGGCGAAGGAATTAGAGGGGGCCGTGGGGGTGGTGTCGTGCATTGGG
GCGTTTGGGTCCAACGCGTTCATGGAGAGGATTAATGGTGATGCCAACGT
CCTCGCTGTAGAAACAGCAGCAAAGGCGGGCGTGCCTCATTTTGTCTATG
TCTCAACCGTCGAAAATAATTTGCCAGATTTCATTTTAAAAGGGTATTTT
AAGGGAAAGAAACGCGCAGAGGAAGCGGTGCTCAAGTCTTTTCCGGGGAG
GAAAGGGATGGTCTTACGTCCGTCTTTTGTGTATGGCACGCGGCAAATTG
GTTCGCTTTCCCTTCCCTTAGCAGCGGTTGGTCGTCCGATGGAGTTGCTC
TTTCGCCTGCCACCTTTTCCAAGCCTGAGGCAGACCTTGCCTGGGACGCA
GGCCCTCCTAGCTCCTCCTGTATCGGTTCAAGCAGTAGCAACAGTGGCAG
CAGCGGGCGCACTGGGGGATGGGAGGGTCAAGGAAGGGGAGGGAGAGAGG
GAGGGGGTGTTGTCGGTGGATGATATTGTGAGGTTGGCGAGGATCGTGTG
A
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protein sequence of jgi.p|Nanoce1779_2|599031

>mRNA_7513-protein ID=mRNA_7513-protein|Name=jgi.p|Nanoce1779_2|599031|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MTAALARGFGLPSSLLPQMMKRRLPRQFSSSSTSTTSTSTNDDKSNFSSG
PKIVVLGGSGYVGRHVLQAALNRGADAVSINRSGKPEGGQASGSWLSQVK
WVASDVFDSNSWAKELEGAVGVVSCIGAFGSNAFMERINGDANVLAVETA
AKAGVPHFVYVSTVENNLPDFILKGYFKGKKRAEEAVLKSFPGRKGMVLR
PSFVYGTRQIGSLSLPLAAVGRPMELLFRLPPFPSLRQTLPGTQALLAPP
VSVQAVATVAAAGALGDGRVKEGEGEREGVLSVDDIVRLARIV*
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mRNA from alignment at scaffold_20:153550..154450+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7513 ID=mRNA_7513|Name=jgi.p|Nanoce1779_2|599031|organism=Nannochloropsis oceanica|type=mRNA|length=901bp|location=Sequence derived from alignment at scaffold_20:153550..154450+ (Nannochloropsis oceanica)
ACAGATTTTCAAAGAAGCCATGACCGCCGCCTTGGCCAGAGGCTTTGGCC
TCCCCTCCTCCCTTCTTCCTCAGATGATGAAGCGCCGTCTGCCACGTCAA
TTCAGCAGCAGCAGCACCTCGACCACCAGCACGAGCACCAACGACGACAA
AAGCAACTTTTCCTCCGGTCCCAAGATTGTGGTGCTTGGTGGGAGTGGCT
ACGTGGGGCGGCATGTGCTGCAAGCGGCCTTGAATCGAGGGGCGGACGCG
GTGAGCATCAACCGTTCTGGCAAGCCCGAAGGGGGCCAGGCGAGTGGAAG
CTGGCTCTCGCAAGTCAAGTGGGTGGCGTCCGACGTCTTTGATAGCAACT
CTTGGGCGAAGGAATTAGAGGGGGCCGTGGGGGTGGTGTCGTGCATTGGG
GCGTTTGGGTCCAACGCGTTCATGGAGAGGATTAATGGTGATGCCAACGT
CCTCGCTGTAGAAACAGCAGCAAAGGCGGGCGTGCCTCATTTTGTCTATG
TCTCAACCGTCGAAAATAATTTGCCAGATTTCATTTTAAAAGGGTATTTT
AAGGGAAAGAAACGCGCAGAGGAAGCGGTGCTCAAGTCTTTTCCGGGGAG
GAAAGGGATGGTCTTACGTCCGTCTTTTGTGTATGGCACGCGGCAAATTG
GTTCGCTTTCCCTTCCCTTAGCAGCGGTTGGTCGTCCGATGGAGTTGCTC
TTTCGCCTGCCACCTTTTCCAAGCCTGAGGCAGACCTTGCCTGGGACGCA
GGCCCTCCTAGCTCCTCCTGTATCGGTTCAAGCAGTAGCAACAGTGGCAG
CAGCGGGCGCACTGGGGGATGGGAGGGTCAAGGAAGGGGAGGGAGAGAGG
GAGGGGGTGTTGTCGGTGGATGATATTGTGAGGTTGGCGAGGATCGTGTG
A
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Coding sequence (CDS) from alignment at scaffold_20:153550..154450+

>mRNA_7513 ID=mRNA_7513|Name=jgi.p|Nanoce1779_2|599031|organism=Nannochloropsis oceanica|type=CDS|length=882bp|location=Sequence derived from alignment at scaffold_20:153550..154450+ (Nannochloropsis oceanica)
ATGACCGCCGCCTTGGCCAGAGGCTTTGGCCTCCCCTCCTCCCTTCTTCC
TCAGATGATGAAGCGCCGTCTGCCACGTCAATTCAGCAGCAGCAGCACCT
CGACCACCAGCACGAGCACCAACGACGACAAAAGCAACTTTTCCTCCGGT
CCCAAGATTGTGGTGCTTGGTGGGAGTGGCTACGTGGGGCGGCATGTGCT
GCAAGCGGCCTTGAATCGAGGGGCGGACGCGGTGAGCATCAACCGTTCTG
GCAAGCCCGAAGGGGGCCAGGCGAGTGGAAGCTGGCTCTCGCAAGTCAAG
TGGGTGGCGTCCGACGTCTTTGATAGCAACTCTTGGGCGAAGGAATTAGA
GGGGGCCGTGGGGGTGGTGTCGTGCATTGGGGCGTTTGGGTCCAACGCGT
TCATGGAGAGGATTAATGGTGATGCCAACGTCCTCGCTGTAGAAACAGCA
GCAAAGGCGGGCGTGCCTCATTTTGTCTATGTCTCAACCGTCGAAAATAA
TTTGCCAGATTTCATTTTAAAAGGGTATTTTAAGGGAAAGAAACGCGCAG
AGGAAGCGGTGCTCAAGTCTTTTCCGGGGAGGAAAGGGATGGTCTTACGT
CCGTCTTTTGTGTATGGCACGCGGCAAATTGGTTCGCTTTCCCTTCCCTT
AGCAGCGGTTGGTCGTCCGATGGAGTTGCTCTTTCGCCTGCCACCTTTTC
CAAGCCTGAGGCAGACCTTGCCTGGGACGCAGGCCCTCCTAGCTCCTCCT
GTATCGGTTCAAGCAGTAGCAACAGTGGCAGCAGCGGGCGCACTGGGGGA
TGGGAGGGTCAAGGAAGGGGAGGGAGAGAGGGAGGGGGTGTTGTCGGTGG
ATGATATTGTGAGGTTGGCGAGGATCGTGTGA
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Synonyms
Publications