jgi.p|Nanoce1779_2|599029, mRNA_7512 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|599029
Unique Name	mRNA_7512
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	982
Alignment location	scaffold_20:152368..153349 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	599115
Track	FilteredModels2
ProteinId	599029

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_20	supercontig	scaffold_20:152368..153349 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599029	gene_7512	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599029	mRNA_7512-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7512	CDS_7512	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_20:152368..153349+
coding sequence from alignment at scaffold_20:152368..153349+

mRNA sequence

>mRNA_7512 ID=mRNA_7512|Name=jgi.p|Nanoce1779_2|599029|organism=Nannochloropsis oceanica|type=mRNA|length=982bp
CGTCTTCCCTCCACCTCAGCATGAAACCTTTCCGCGAGCATATTTATTTC
TTCCTCTAGCCGCGCGCATTCTGGCACGACTTTCTCCTCGACCATCCTCC
TCTTTTCGGTCAATTTTTTGAATTCATTTTTAAATTTTAAGTAACGACTC
AGAGTCTGTTTTTTTCTCTGTTCGTTTTCTTTCTCCCATGCCTGTAGGCC
CTCAGAAGAGGAGAGAAGGCAAGGGAGAAGATTTAAGGTCCAGTCTAAGT
CTTCTTCTCGCACCGAGTGCTCAGCGAGGAGGGTGGAAACGTAGGTGGAA
GAGAGGGAGGCGTAACCTTTTTGCTGCTCGGTGAGAGTGTGGGTTAGGAC
GTCGATTGATTCGAGGTGGGCTTGACGCTTGAGCTGCCCGAGCGAGATTT
GAAGGTCATCTTTTCTTAAGGATGATGGCATGTCGGGACGACGACGAGCG
CTGCTGCTGCGGCTGCTGCCGGATGTGGCGGCGATGGAGGGGTCGGTCTT
GAGGAAGAGCTCTCGAATACGTTTCTGTTGCTGGATTTGTTTCAATTGCA
ATTCACACCGGCGGGAGAGCTGTTCAAGCTCCCGTTCTTTTTCGACGCAC
AACCAGACTTTGGAAGCGCTCAGGCTGGCTTGCGTGTTGAGGAGGTGGTG
GAGGAGAGAGAGGAATTGGGCGCGTTTCTCTTGTAATTCTTGGCGTTTGC
TCAGGGCACGAAGCAAGGGACCATTGCCTTTCTCCAGGTCCATGTGCGCC
TTAAGCTGCTGCTGAAAGGCGGCAAGTTTCACTTGGGCTTGCTCAATTGT
CGCGGCGGTGGACACGGTTGTGGTAGGACCAGTAGATGATTTGTCATGTC
GGCCAGCCGAGGCGCGGGAAGAAGGGGGAGGCGGACGTGGGTACGGGTAG
GAGGGGCCGGTGGCCGTGCTGCTTTCGGCCGCCCCACGTCGCCCCGTCGA
AACTGGGGGGCGCATCATGGCGGTGTCCTGTT

protein sequence of jgi.p|Nanoce1779_2|599029

>mRNA_7512-protein ID=mRNA_7512-protein|Name=jgi.p|Nanoce1779_2|599029|organism=Nannochloropsis oceanica|type=polypeptide|length=112bp
MSGRRRALLLRLLPDVAAMEGSVLRKSSRIRFCCWICFNCNSHRRESCSS
SRSFSTHNQTLEALRLACVLRRWWRRERNWARFSCNSWRLLRARSKGPLP
FSRSMCALSCC*

mRNA from alignment at scaffold_20:152368..153349+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7512 ID=mRNA_7512|Name=jgi.p|Nanoce1779_2|599029|organism=Nannochloropsis oceanica|type=mRNA|length=982bp|location=Sequence derived from alignment at scaffold_20:152368..153349+ (Nannochloropsis oceanica)
CGTCTTCCCTCCACCTCAGCATGAAACCTTTCCGCGAGCATATTTATTTC
TTCCTCTAGCCGCGCGCATTCTGGCACGACTTTCTCCTCGACCATCCTCC
TCTTTTCGGTCAATTTTTTGAATTCATTTTTAAATTTTAAGTAACGACTC
AGAGTCTGTTTTTTTCTCTGTTCGTTTTCTTTCTCCCATGCCTGTAGGCC
CTCAGAAGAGGAGAGAAGGCAAGGGAGAAGATTTAAGGTCCAGTCTAAGT
CTTCTTCTCGCACCGAGTGCTCAGCGAGGAGGGTGGAAACGTAGGTGGAA
GAGAGGGAGGCGTAACCTTTTTGCTGCTCGGTGAGAGTGTGGGTTAGGAC
GTCGATTGATTCGAGGTGGGCTTGACGCTTGAGCTGCCCGAGCGAGATTT
GAAGGTCATCTTTTCTTAAGGATGATGGCATGTCGGGACGACGACGAGCG
CTGCTGCTGCGGCTGCTGCCGGATGTGGCGGCGATGGAGGGGTCGGTCTT
GAGGAAGAGCTCTCGAATACGTTTCTGTTGCTGGATTTGTTTCAATTGCA
ATTCACACCGGCGGGAGAGCTGTTCAAGCTCCCGTTCTTTTTCGACGCAC
AACCAGACTTTGGAAGCGCTCAGGCTGGCTTGCGTGTTGAGGAGGTGGTG
GAGGAGAGAGAGGAATTGGGCGCGTTTCTCTTGTAATTCTTGGCGTTTGC
TCAGGGCACGAAGCAAGGGACCATTGCCTTTCTCCAGGTCCATGTGCGCC
TTAAGCTGCTGCTGAAAGGCGGCAAGTTTCACTTGGGCTTGCTCAATTGT
CGCGGCGGTGGACACGGTTGTGGTAGGACCAGTAGATGATTTGTCATGTC
GGCCAGCCGAGGCGCGGGAAGAAGGGGGAGGCGGACGTGGGTACGGGTAG
GAGGGGCCGGTGGCCGTGCTGCTTTCGGCCGCCCCACGTCGCCCCGTCGA
AACTGGGGGGCGCATCATGGCGGTGTCCTGTT

Coding sequence (CDS) from alignment at scaffold_20:152368..153349+

>mRNA_7512 ID=mRNA_7512|Name=jgi.p|Nanoce1779_2|599029|organism=Nannochloropsis oceanica|type=CDS|length=336bp|location=Sequence derived from alignment at scaffold_20:152368..153349+ (Nannochloropsis oceanica)
ATGTCGGGACGACGACGAGCGCTGCTGCTGCGGCTGCTGCCGGATGTGGC
GGCGATGGAGGGGTCGGTCTTGAGGAAGAGCTCTCGAATACGTTTCTGTT
GCTGGATTTGTTTCAATTGCAATTCACACCGGCGGGAGAGCTGTTCAAGC
TCCCGTTCTTTTTCGACGCACAACCAGACTTTGGAAGCGCTCAGGCTGGC
TTGCGTGTTGAGGAGGTGGTGGAGGAGAGAGAGGAATTGGGCGCGTTTCT
CTTGTAATTCTTGGCGTTTGCTCAGGGCACGAAGCAAGGGACCATTGCCT
TTCTCCAGGTCCATGTGCGCCTTAAGCTGCTGCTGA

Synonyms

Publications