jgi.p|Nanoce1779_2|574014, mRNA_751 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574014
Unique Name	mRNA_751
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1721
Alignment location	scaffold_2:353323..355053 +

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Properties


Property Name	Value
TranscriptId	574100
Track	FilteredModels2
ProteinId	574014

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:353323..355053 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574014	gene_751	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574014	mRNA_751-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_751	CDS_751	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:353323..355053+
coding sequence from alignment at scaffold_2:353323..355053+

mRNA sequence

>mRNA_751 ID=mRNA_751|Name=jgi.p|Nanoce1779_2|574014|organism=Nannochloropsis oceanica|type=mRNA|length=1721bp
AATGAACAGAGGAAAGAAGGATGGCTTTTTATCCTTCTCCTACTATCTCT
AATCAGCAATAGGGAAAGAGGGAGGGAGGGAATGCGAGAGGGGGGAGGAA
GGGAGGATCGCTGATCGCCGACACTACCTCATGTTTTCTCGGCGACCGAC
ACAGATCAAGAAATCGAAAGAAAAGTGGTCGACAAAATTACAAGTGACTG
TCAGGGAGGGGGGTTGGTTCCCTTTTTGGTGCAGGACAAGAACATCCAAT
TGGAGAATCATTTCAGGTAGAAACGAACCATACTACTCCGGGCTCTCCTA
TACATGCGGTGCGTAGCCCCATATAACGACAGACAGCTGCATTGGTGTTC
ACTATGTCTGCGGTTGTCGAGATAACAGAAAACTATTTCTTCGGGCAAAC
CGTGCCTTCTCATACGAGCTCGTAAGAAAGGTGCTCGAGACTGACGGGCC
TGAGGCGTGCTTTGGACAAGTCGATCACTGCACTCTTTGAGAAGGCAAAG
GAACTTACTGAGAACAGATTATGTATGTATTGAACAACGACACAACCAAT
ATCGCCGTGGTAAACGGGCCGTAGCCTGCTCCCTCGCTCCTTTCCTTTCC
TATTTCTCATTCTCTCCCTCTCTCTTGCCTGTCTGCCATATCTCGTCCAG
GATTTTCACAGAAGCGTAAGTTTTATCTCCACTTTTGTTTGGAGAAAATA
TTTGAATTTGTACATTCGTATTCAATACTGTTTTTTCCATTGTTCACCAA
AGCGGCATGACCTCTCCACCTTTGCTCTTGCATACTTCCTGGTACAAAAA
TAGGGAATCAACATATGAAAAATAATGATATTTGGCCTGTATGGGAATCA
TCTCTCGGTATCTGTTTTGTTTCTTTGAATGATGTGGCGTGGAAACTGGT
TTAATCGGTCGAATGCTACTGTTTTTCATCACCGCCTTTCTCTCTGGTGA
AATCTATTTTTCTGACTGCCGATCTGTGTTGCTGCCCTCCAAGTTTCTTC
CTTCGCCGTCCTCCTTCTTCTTCTTTTCATATCCTTCTGTGCGTAGTCGC
TGTGCTGCCACATTAAAGACAGGCTGTACCTTGCTATCTCTTACCTCTTA
TTTTTCTAAGAACGGCGATACAAATGACTGCAACGATGGAGATGATGGAG
TTGGTAACAGACGACGAGGGAGGAAGGGAAACACTCAGCTCCTTAAAAAA
GGAGTCCTCCCGACACAGAAGAAAATTCAACTCGGGGTAAAGAGAAGTCG
GGAAAAAAAGGGTGCCTTATAATATATATATGTATATATATATATTATAT
GACAGAAGGGGGAACAGAAAAACAAACAGAGATAAAAATAAATTAATCTC
AAATGCAATGACGGACGCCCGTACGGACGGCAAGCAACAAACACTACCGC
ACTGAGCGCGGCTCTCTCTTTTTCCCCAGCCCCTCAATTTCGCTCACTCA
TATCTTCTCTCTCTCTGCCTGGGCTGGTAACTCCAGACAGAGCACGTGCA
ACAGAAGGAGCACACAAGAACGAAGCGTACGGTTAGGTCTGAGACCCGAC
AATTACAGGAAGCGGCCCCTCTCTGACCAAAAATATGGCACTTTAGCCCC
TGTTGTCCTACTGGTGCTACTGCTGTTCAAACACACACACACACACACAC
ACACTTCTCAATCCATCCCCCATCTCTCCCATCTCTCCCATCTCTCTGCC
AGATATTTAAATCGAGTCCTT

protein sequence of jgi.p|Nanoce1779_2|574014

>mRNA_751-protein ID=mRNA_751-protein|Name=jgi.p|Nanoce1779_2|574014|organism=Nannochloropsis oceanica|type=polypeptide|length=120bp
MLLFFITAFLSGEIYFSDCRSVLLPSKFLPSPSSFFFFSYPSVRSRCAAT
LKTGCTLLSLTSYFSKNGDTNDCNDGDDGVGNRRRGRKGNTQLLKKGVLP
TQKKIQLGVKRSREKKGAL*

mRNA from alignment at scaffold_2:353323..355053+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_751 ID=mRNA_751|Name=jgi.p|Nanoce1779_2|574014|organism=Nannochloropsis oceanica|type=mRNA|length=1731bp|location=Sequence derived from alignment at scaffold_2:353323..355053+ (Nannochloropsis oceanica)
AATGAACAGAGGAAAGAAGGATGGCTTTTTATCCTTCTCCTACTATCTCT
AATCAGCAATAGGGAAAGAGGGAGGGAGGGAATGCGAGAGGGGGGAGGAA
GGGAGGATCGCTGATCGCCGACACTACCTCATGTTTTCTCGGCGACCGAC
ACAGATCAAGAAATCGAAAGAAAAGTGGTCGACAAAATTACAAGTGACTG
TCAGGGAGGGGGGTTGGTTCCCTTTTTGGTGCAGGACAAGAACATCCAAT
TGGAGAATCATTTCAGGTAGAAACGAACCATACTACTCCGGGCTCTCCTA
TACATGCGGTGCGTAGCCCCATATAACGACAGACAGCTGCATTGGTGTTC
ACTATGTCTGCGGTTGTCGAGATAACAGAAAACTATTTCTTCGGGCAAAC
CGTGCCTTCTCATACGAGCTCGTAAGAAAGGTGCTCGAGACTGACGGGCC
TGAGGCGTGCTTTGGACAAGTCGATCACTGCACTCTTTGAGAAGGCAAAG
GAACTTACTGAGAACAGATTATGTATGTATTGAACAACGACACAACCAAT
ATCGCCGTGGTAAACGGGCCGTAGCCTGCTCCCTCGCTCCTTTCCTTTCC
TATTTCTCATTCTCTCCCTCTCTCTTGCCTGTCTGCCATATCTCGTCCAG
GATTTTCACAGAAGCGTAAGTTTTATCTCCACTTTTGTTTGGAGAAAATA
TTTGAATTTGTACATTCGTATTCAATACTGTTTTTTCCATTGTTCACCAA
AGCGGCATGACCTCTCCACCTTTGCTCTTGCATACTTCCTGGTACAAAAA
TAGGGAATCAACATATGAAAAATAATGATATTTGGCCTGTATGGGAATCA
TCTCTCGGTATCTGTTTTGTTTCTTTGAATGATGTGGCGTGGAAACTGGT
TTAATCGGTCGAATGCTACTGTTTTTCATCACCGCCTTTCTCTCTGGTGA
AATCTATTTTTCTGACTGCCGATCTGTGTTGCTGCCCTCCAAGTTTCTTC
CTTCGCCGTCCTCCTTCTTCTTCTTTTCATATCCTTCTGTGCGTAGTCGC
TGTGCTGCCACATTAAAGACAGGCTGTACCTTGCTATCTCTTACCTCTTA
TTTTTCTAAGAACGGCGATACAAATGACTGCAACGATGGAGATGATGGAG
TTGGTAACAGACGACGAGGGAGGAAGGGAAACACTCAGCTCCTTAAAAAA
GGAGTCCTCCCGACACAGAAGAAAATTCAACTCGGGGTAAAGAGAAGTCG
GGAAAAAAAGGGTGCCTTATAATATATATATGTATATATATATATTATAT
GACAGAAGGGGGAACAGAAAAACAAACAGAGATAAAAATAAATTAATCTC
AAATGCAATGACGGACGCCCGTACGGACGGCAAGCAACAAACACTACCGC
ACTGAGCGCGGCTCTCTCTTTTTCCCCAGCCCCTCAATTTCGCTCACTCA
TATCTTCTCTCTCTCTGCCTGGGCTGGTAACTCCAGACAGAGCACGTGCA
ACAGAAGGAGCACACAAGAACGAAGCGTACGGTTAGGTCTGAGACCCGAC
AATTACAGGAAGCGGCCCCTCTCTGACCAAAAATATGGCACTTTAGCCCC
TGTTGTCCTACTGGTGCTACTGCTGTTCAAACACACACACACACACACAC
ACACACACACACACTTCTCAATCCATCCCCCATCTCTCCCATCTCTCCCA
TCTCTCTGCCAGATATTTAAATCGAGTCCTT

Coding sequence (CDS) from alignment at scaffold_2:353323..355053+

>mRNA_751 ID=mRNA_751|Name=jgi.p|Nanoce1779_2|574014|organism=Nannochloropsis oceanica|type=CDS|length=360bp|location=Sequence derived from alignment at scaffold_2:353323..355053+ (Nannochloropsis oceanica)
ATGCTACTGTTTTTCATCACCGCCTTTCTCTCTGGTGAAATCTATTTTTC
TGACTGCCGATCTGTGTTGCTGCCCTCCAAGTTTCTTCCTTCGCCGTCCT
CCTTCTTCTTCTTTTCATATCCTTCTGTGCGTAGTCGCTGTGCTGCCACA
TTAAAGACAGGCTGTACCTTGCTATCTCTTACCTCTTATTTTTCTAAGAA
CGGCGATACAAATGACTGCAACGATGGAGATGATGGAGTTGGTAACAGAC
GACGAGGGAGGAAGGGAAACACTCAGCTCCTTAAAAAAGGAGTCCTCCCG
ACACAGAAGAAAATTCAACTCGGGGTAAAGAGAAGTCGGGAAAAAAAGGG
TGCCTTATAA

Synonyms

Publications