jgi.p|Nanoce1779_2|599019, mRNA_7509 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|599019
Unique Name	mRNA_7509
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1936
Alignment location	scaffold_20:144876..147095 -

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Properties


Property Name	Value
TranscriptId	599105
Track	FilteredModels2
ProteinId	599019

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_20	supercontig	scaffold_20:144876..147095 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599019	gene_7509	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599019	mRNA_7509-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7509	CDS_7509	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_20:144876..147095-
coding sequence from alignment at scaffold_20:144876..147095-

mRNA sequence

>mRNA_7509 ID=mRNA_7509|Name=jgi.p|Nanoce1779_2|599019|organism=Nannochloropsis oceanica|type=mRNA|length=1936bp
ACAGGTCTCTGTCCTTTATTGGATCAGCAGCAGCGCAAGCAGCGGTGACA
GCAACAGGACAACTTTTTAGCGTCTTCCTTGCCTTGCCTTGCTCCCATCA
TTAAAGTGGGCGACGGCGAGGAGCAACATCATTTAACGAGGACACACTCA
TATCACCATGCCTGCCTCAAGAAGACCAGTCAGCAGCAGCTACGAGAATC
GGCCGCGACAAAGGCAGGGTTTGCTTGTAATGGCCCCTCTCCTCATCTTT
GGTTTCCTTGTCCTCTTCACCCCGGGCGCCGCGGCTGTCAAAGTGTGGGG
CTTGCCTTTTGCCAATCCTCTGCACTGGCTTCGTCCCGGCAGCAGCGGCA
CGCGAAACTTGCAAGCCGCCGTCCGCGCTCTCGAGGGCGAACTTTCTCGT
CTCCGTTCCCTTCATTCTGCCCATCTTGAGGAGTTGCGCAAGCTGCGCTT
GAAACGCGCTGAGGACCATGCCCTCTTTCGTCAACAGAAACGTGAACAAG
ATGAAAAACTTTTAAAAATTCAGAAGGAGGCAGCAGAGGCATTAGCATTA
GCCAAGGAGAAGGAAGCAGGGGTAGAGGAAGAGTTGGAGAATGAGAGGAA
GAGATGGAGGATTGAGGCACAGGAAGCGATCGGCAAGGCAGTGAGGGTAG
CCGTGGAGCAGGAAGGGAGGAAGCGGAAAGAGGAGGTAGGGAAATTGGAA
AGTTTGTTGGCGGCTAGGACGAGGGATGACGAGGAGGGGAAGGAGATTGA
GGAGATGGAGGAGATGTTCGAGAAGGAACGAAAGGTGTTCAAAAAGAGGC
TGGCGGCTGAGAGGGAGGTGGCAGAGGAGGCACTGGAGAGAGAGGAAAAG
CTGCAGCAGGTGGTTTCAGCTTTGGAGGATGATAATCAGATTTTAAAGAA
CGAGGTGGGAAAATTGACCATGAAGATCAACAGCAGCAGTAGCGTGCCTC
CCACAACAGCAGCAGCGGCAGCACCAGCACCAGCAGCTGTAGTACCGGTA
AAAGAGGAGGAGGAGAATAAGGGGGAAGAAGTTGTTGCACCAGCAGCAGT
ACTAGCATCACCAGCTGCGACCACGGAGCCAGTTAAGACGACACAGGCCG
TCATGCCCCCCACCTCTCCTCCTGTGGCAGGCACGCTGAAAGTCACCACT
CCTTCCAGCGGCAGCATCAGTGGTGGTTATAGCGACAAGAGTTGCATCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATCACCACCACGA
AGACGCCGGCAGTGGCAGCGCCTGTCAAGAAGTTAAAAAAAAAAGTGTCA
AGCAAATCAGCAGGAGGGCGAGTCGGAAGTGGAGCAGCAGGAGCAGCAAG
GGCAGGTGCAGGAGTATCAAGAGGATCAGGCACGATTTCTCCACCACCTG
TAGTAAAAAATATCGTTCCAAAAAGGACAGTTACCATGAAGAAGAAGGAG
GCGGCGGCAAGCAACTCGTCTGCCTCCTCCCCCTCCCCCCTTTCCTCCTC
CTCTAAGGCATCTCGTCCAAGACACCAGCCAGTGGCGCCTTCGATTAAGA
AGGGCGGTCTGGGTACATCCAAATAGCACACACTAGCGTTGAATCATGGA
AAGGAAAGAGAATAATGGAGTGAAGGAAGAGAGAGTAGGTGAAACGCAAG
CGAAGGACATTAGAATTACAGTCTTGAGAAGGAGAGAGGAGAAAATGAAG
AGAAGAAAAAACTAACAGGAAGGAAACCACCCATATAAGGTCTTGGCATA
TCTTAAAACATGGACTACAACACGACACGCAAAACAGACCATTGGCAATG
GGGATACAGGCTTTTCGCCGGAGTATTACATCTAAGCGGTAGGCGAACGA
GAATTCAAAGTCGAAACTTGTAAAGGTATAGAAAGGAAAGACGGGGCAAC
CCCTCGAATATAAAGAAAAAAAATCTCTCTTGGACA

protein sequence of jgi.p|Nanoce1779_2|599019

>mRNA_7509-protein ID=mRNA_7509-protein|Name=jgi.p|Nanoce1779_2|599019|organism=Nannochloropsis oceanica|type=polypeptide|length=473bp
MPASRRPVSSSYENRPRQRQGLLVMAPLLIFGFLVLFTPGAAAVKVWGLP
FANPLHWLRPGSSGTRNLQAAVRALEGELSRLRSLHSAHLEELRKLRLKR
AEDHALFRQQKREQDEKLLKIQKEAAEALALAKEKEAGVEEELENERKRW
RIEAQEAIGKAVRVAVEQEGRKRKEEVGKLESLLAARTRDDEEGKEIEEM
EEMFEKERKVFKKRLAAEREVAEEALEREEKLQQVVSALEDDNQILKNEV
GKLTMKINSSSSVPPTTAAAAAPAPAAVVPVKEEEENKGEEVVAPAAVLA
SPAATTEPVKTTQAVMPPTSPPVAGTLKVTTPSSGSISGGYSDKSCISSS
SSSSSSSSSSITTTKTPAVAAPVKKLKKKVSSKSAGGRVGSGAAGAARAG
AGVSRGSGTISPPPVVKNIVPKRTVTMKKKEAAASNSSASSPSPLSSSSK
ASRPRHQPVAPSIKKGGLGTSK*

mRNA from alignment at scaffold_20:144876..147095-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7509 ID=mRNA_7509|Name=jgi.p|Nanoce1779_2|599019|organism=Nannochloropsis oceanica|type=mRNA|length=2220bp|location=Sequence derived from alignment at scaffold_20:144876..147095- (Nannochloropsis oceanica)
ACAGGTCTCTGTCCTTTATTGGATCAGCAGCAGCGCAAGCAGCGGTGACA
GCAACAGGACAACTTTTTAGCGTCTTCCTTGCCTTGCCTTGCTCCCATCA
TTAAAGTGGGCGACGGCGAGGAGCAACATCATTTAACGAGGACACACTCA
TATCACCATGCCTGCCTCAAGAAGACCAGTCAGCAGCAGCTACGAGAATC
GGCCGCGACAAAGGCAGGGTTTGCTTGTAATGGCCCCTCTCCTCATCTTT
GGTTTCCTTGTCCTCTTCACCCCGGGCGCCGCGGCTGTCAAAGTGTGGGG
CTTGCCTTTTGCCAGTACGTAAACTGAGTGACAGGGAGGACTCATTGTGT
CATGAATTTCCCATTATTTTTTCGTGTGTATTAAATTTACCATATATTTC
TTAAGTTTACTCTTAGCCTCCTGTTTTCTTCGCATGCTCCCTTTCTACGC
TCTTCACTCTCCTGCACCACACCTCAGATCAACAGAGACTTACCAGCAAG
TTTTCAATGAATTTCACGCGGTGAAAGCAAACAATTCTGTAATCAGCTTC
AACCCTTCCTCCCTCTCTCCCTCTCTCTCTCCCTCCCTCCCTCCACAGAT
CCTCTGCACTGGCTTCGTCCCGGCAGCAGCGGCACGCGAAACTTGCAAGC
CGCCGTCCGCGCTCTCGAGGGCGAACTTTCTCGTCTCCGTTCCCTTCATT
CTGCCCATCTTGAGGAGTTGCGCAAGCTGCGCTTGAAACGCGCTGAGGAC
CATGCCCTCTTTCGTCAACAGAAACGTGAACAAGATGAAAAACTTTTAAA
AATTCAGAAGGAGGCAGCAGAGGCATTAGCATTAGCCAAGGAGAAGGAAG
CAGGGGTAGAGGAAGAGTTGGAGAATGAGAGGAAGAGATGGAGGATTGAG
GCACAGGAAGCGATCGGCAAGGCAGTGAGGGTAGCCGTGGAGCAGGAAGG
GAGGAAGCGGAAAGAGGAGGTAGGGAAATTGGAAAGTTTGTTGGCGGCTA
GGACGAGGGATGACGAGGAGGGGAAGGAGATTGAGGAGATGGAGGAGATG
TTCGAGAAGGAACGAAAGGTGTTCAAAAAGAGGCTGGCGGCTGAGAGGGA
GGTGGCAGAGGAGGCACTGGAGAGAGAGGAAAAGCTGCAGCAGGTGGTTT
CAGCTTTGGAGGATGATAATCAGATTTTAAAGAACGAGGTGGGAAAATTG
ACCATGAAGATCAACAGCAGCAGTAGCGTGCCTCCCACAACAGCAGCAGC
GGCAGCACCAGCACCAGCAGCTGTAGTACCGGTAAAAGAGGAGGAGGAGA
ATAAGGGGGAAGAAGTTGTTGCACCAGCAGCAGTACTAGCATCACCAGCT
GCGACCACGGAGCCAGTTAAGACGACACAGGCCGTCATGCCCCCCACCTC
TCCTCCTGTGGCAGGCACGCTGAAAGTCACCACTCCTTCCAGCGGCAGCA
TCAGTGGTGGTTATAGCGACAAGAGTTGCATCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCATCACCACCACGAAGACGCCGGCAGTGGC
AGCGCCTGTCAAGAAGTTAAAAAAAAAAGTGTCAAGCAAATCAGCAGGAG
GGCGAGTCGGAAGTGGAGCAGCAGGAGCAGCAAGGGCAGGTGCAGGAGTA
TCAAGAGGATCAGGCACGATTTCTCCACCACCTGTAGTAAAAAATATCGT
TCCAAAAAGGACAGTTACCATGAAGAAGAAGGAGGCGGCGGCAAGCAACT
CGTCTGCCTCCTCCCCCTCCCCCCTTTCCTCCTCCTCTAAGGCATCTCGT
CCAAGACACCAGCCAGTGGCGCCTTCGATTAAGAAGGGCGGTCTGGGTAC
ATCCAAATAGCACACACTAGCGTTGAATCATGGAAAGGAAAGAGAATAAT
GGAGTGAAGGAAGAGAGAGTAGGTGAAACGCAAGCGAAGGACATTAGAAT
TACAGTCTTGAGAAGGAGAGAGGAGAAAATGAAGAGAAGAAAAAACTAAC
AGGAAGGAAACCACCCATATAAGGTCTTGGCATATCTTAAAACATGGACT
ACAACACGACACGCAAAACAGACCATTGGCAATGGGGATACAGGCTTTTC
GCCGGAGTATTACATCTAAGCGGTAGGCGAACGAGAATTCAAAGTCGAAA
CTTGTAAAGGTATAGAAAGGAAAGACGGGGCAACCCCTCGAATATAAAGA
AAAAAAATCTCTCTTGGACA

Coding sequence (CDS) from alignment at scaffold_20:144876..147095-

>mRNA_7509 ID=mRNA_7509|Name=jgi.p|Nanoce1779_2|599019|organism=Nannochloropsis oceanica|type=CDS|length=2838bp|location=Sequence derived from alignment at scaffold_20:144876..147095- (Nannochloropsis oceanica)
ATCCTCTGCACTGGCTTCGTCCCGGCAGCAGCGGCACGCGAAACTTGCAA
GCCGCCGTCCGCGCTCTCGAGGGCGAACTTTCTCGTCTCCGTTCCCTTCA
TTCTGCCCATCTTGAGGAGTTGCGCAAGCTGCGCTTGAAACGCGCTGAGG
ACCATGCCCTCTTTCGTCAACAGAAACGTGAACAAGATGAAAAACTTTTA
AAAATTCAGAAGGAGGCAGCAGAGGCATTAGCATTAGCCAAGGAGAAGGA
AGCAGGGGTAGAGGAAGAGTTGGAGAATGAGAGGAAGAGATGGAGGATTG
AGGCACAGGAAGCGATCGGCAAGGCAGTGAGGGTAGCCGTGGAGCAGGAA
GGGAGGAAGCGGAAAGAGGAGGTAGGGAAATTGGAAAGTTTGTTGGCGGC
TAGGACGAGGGATGACGAGGAGGGGAAGGAGATTGAGGAGATGGAGGAGA
TGTTCGAGAAGGAACGAAAGGTGTTCAAAAAGAGGCTGGCGGCTGAGAGG
GAGGTGGCAGAGGAGGCACTGGAGAGAGAGGAAAAGCTGCAGCAGGTGGT
TTCAGCTTTGGAGGATGATAATCAGATTTTAAAGAACGAGGTGGGAAAAT
TGACCATGAAGATCAACAGCAGCAGTAGCGTGCCTCCCACAACAGCAGCA
GCGGCAGCACCAGCACCAGCAGCTGTAGTACCGGTAAAAGAGGAGGAGGA
GAATAAGGGGGAAGAAGTTGTTGCACCAGCAGCAGTACTAGCATCACCAG
CTGCGACCACGGAGCCAGTTAAGACGACACAGGCCGTCATGCCCCCCACC
TCTCCTCCTGTGGCAGGCACGCTGAAAGTCACCACTCCTTCCAGCGGCAG
CATCAGTGGTGGTTATAGCGACAAGAGTTGCATCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCATCACCACCACGAAGACGCCGGCAGTG
GCAGCGCCTGTCAAGAAGTTAAAAAAAAAAGTGTCAAGCAAATCAGCAGG
AGGGCGAGTCGGAAGTGGAGCAGCAGGAGCAGCAAGGGCAGGTGCAGGAG
TATCAAGAGGATCAGGCACGATTTCTCCACCACCTGTAGTAAAAAATATC
GTTCCAAAAAGGACAGTTACCATGAAGAAGAAGGAGGCGGCGGCAAGCAA
CTCGTCTGCCTCCTCCCCCTCCCCCCTTTCCTCCTCCTCTAAGGCATCTC
GTCCAAGACACCAGCCAGTGGCGCCTTCGATTAAGAAGGGCGGTCTGGGT
ACATCCAAATAGATGCCTGCCTCAAGAAGACCAGTCAGCAGCAGCTACGA
GAATCGGCCGCGACAAAGGCAGGGTTTGCTTGTAATGGCCCCTCTCCTCA
TCTTTGGTTTCCTTGTCCTCTTCACCCCGGGCGCCGCGGCTGTCAAAGTG
TGGGGCTTGCCTTTTGCCAATCCTCTGCACTGGCTTCGTCCCGGCAGCAG
CGGCACGCGAAACTTGCAAGCCGCCGTCCGCGCTCTCGAGGGCGAACTTT
CTCGTCTCCGTTCCCTTCATTCTGCCCATCTTGAGGAGTTGCGCAAGCTG
CGCTTGAAACGCGCTGAGGACCATGCCCTCTTTCGTCAACAGAAACGTGA
ACAAGATGAAAAACTTTTAAAAATTCAGAAGGAGGCAGCAGAGGCATTAG
CATTAGCCAAGGAGAAGGAAGCAGGGGTAGAGGAAGAGTTGGAGAATGAG
AGGAAGAGATGGAGGATTGAGGCACAGGAAGCGATCGGCAAGGCAGTGAG
GGTAGCCGTGGAGCAGGAAGGGAGGAAGCGGAAAGAGGAGGTAGGGAAAT
TGGAAAGTTTGTTGGCGGCTAGGACGAGGGATGACGAGGAGGGGAAGGAG
ATTGAGGAGATGGAGGAGATGTTCGAGAAGGAACGAAAGGTGTTCAAAAA
GAGGCTGGCGGCTGAGAGGGAGGTGGCAGAGGAGGCACTGGAGAGAGAGG
AAAAGCTGCAGCAGGTGGTTTCAGCTTTGGAGGATGATAATCAGATTTTA
AAGAACGAGGTGGGAAAATTGACCATGAAGATCAACAGCAGCAGTAGCGT
GCCTCCCACAACAGCAGCAGCGGCAGCACCAGCACCAGCAGCTGTAGTAC
CGGTAAAAGAGGAGGAGGAGAATAAGGGGGAAGAAGTTGTTGCACCAGCA
GCAGTACTAGCATCACCAGCTGCGACCACGGAGCCAGTTAAGACGACACA
GGCCGTCATGCCCCCCACCTCTCCTCCTGTGGCAGGCACGCTGAAAGTCA
CCACTCCTTCCAGCGGCAGCATCAGTGGTGGTTATAGCGACAAGAGTTGC
ATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATCACCAC
CACGAAGACGCCGGCAGTGGCAGCGCCTGTCAAGAAGTTAAAAAAAAAAG
TGTCAAGCAAATCAGCAGGAGGGCGAGTCGGAAGTGGAGCAGCAGGAGCA
GCAAGGGCAGGTGCAGGAGTATCAAGAGGATCAGGCACGATTTCTCCACC
ACCTGTAGTAAAAAATATCGTTCCAAAAAGGACAGTTACCATGAAGAAGA
AGGAGGCGGCGGCAAGCAACTCGTCTGCCTCCTCCCCCTCCCCCCTTTCC
TCCTCCTCTAAGGCATCTCGTCCAAGACACCAGCCAGTGGCGCCTTCGAT
TAAGAAGGGCGGTCTGGGTACATCCAAATAGATGCCTGCCTCAAGAAGAC
CAGTCAGCAGCAGCTACGAGAATCGGCCGCGACAAAGGCAGGGTTTGCTT
GTAATGGCCCCTCTCCTCATCTTTGGTTTCCTTGTCCTCTTCACCCCGGG
CGCCGCGGCTGTCAAAGTGTGGGGCTTGCCTTTTGCCA

Synonyms

Publications