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Properties
| Property Name | Value |
|---|
| TranscriptId | 599087 |
| Track | FilteredModels2 |
| ProteinId | 599001 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_20 | supercontig | scaffold_20:135433..138514 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_7507 ID=mRNA_7507|Name=jgi.p|Nanoce1779_2|599001|organism=Nannochloropsis oceanica|type=mRNA|length=2767bp
ACAGCTTCATTCTCAGCGCTCGGGCACGTTTGTTCCCCCCTTCGCTTTCC
TTTCCCCGCTCCTCGTCCTCCTTCCTTCTCCCACCACACTCGCGGTGCTA
TCACTTTCCTCCTCTCCTCTGAGCCGTCCCCCGACTCCGAATCCACCCTC
CACCACTCAGCCTTCCGAAACGAAAAGCTGTGTTGAGTAGGAGACTATTA
CATTCTAGCTAAGCATCACGTTTTAGCTAGAAGAAAGCAGGAACCACCCG
CTACCAGAGGAAAAGGAATGCTGAACCCCACGGTCGGTGGCCCTACTTCT
CCTTTGGACGACGCACACGCTTATCATCACCAGTATCACCAACAACAAGA
TAACGAAAACAGTGCACCGGTAGGGATGGACGAACACGAAGATATCGGCA
CGGAGCATGGCGACGACAAGCCCCAAACCACCACCACCACCACTTCCAGC
GGGAGCAACCGCCGTCGAAGCAGTGGCGCAGGGAGGAGCAGTACCGGCGG
GCGTCGTTTGAGTGCTTCACTGGCGAATCTGTCTCTGTCTTCGGGGTTGG
AAGCGACGACATGCTTGTTGTTGCCCGCCTCGCGGATTGGGGGAGTGATA
GGGCGGGGAGGCGATGTTATTAAGGGCATTCGTGAATTGACGGGGACACG
GATTCATATAAGCTCCGCGTCAGAAGACGATCGTGATCCAGCTTTTCGCC
CCGTGACTGTGTCGGGGTCTGTCCAAGAAGTTTGCTCGGCCGTGGAGCTG
ATTGCCCGGCAGGCGGGGCTGTTCGAGAACCAACAGCAGCAGCAGGGAGA
GGGGGGGGAAGAGGAGTACTATCCCCAGGGTATTCGGATGGTTATTGACA
GCGGGAATGCCGGGCAGCTGATTGGGAAAAAGGGGGCGACGATCAATGAG
ATCCGCACACAGTCCCAGGCTCGTATCCAGGTGTTGTCCGAGGATGAGAG
CGCGGAGGAGGGAGCGCTGGGGATGGAGCGTGTGGTGATCCTCATGGGCG
ATGCCGAGGCTTGCCGCGTGGCCCATAAGATGATCTGCTCCTTGCTTGCG
GCGGCCTATGCCGCTGCCGCTGGTGGCGGTGGCGTGAACTCGCCCTCTGG
TCAGCAGCAGCAGCACGTGCAGCACGTGCAGCACGTGCAGCAGCACCACC
ACCATGCCCCCGTGGCCGTGGGTAACTCTTCGTCTTTCTTCAGCGGGGGC
GACGCCACGCCCCTGTCGGACGCGGCATTCCGCCAGCACGACAACGCGCA
CGCCTCTTCATCCTCGTTCTTGCACGGGACAGAACACGAGGCGGGGGGGG
AGGGCGGTGGGGAGGATTACGACGACTCGTGCGAGGTGATTATGCGCGTG
CCGAATGACAAGATCGGGCGGGTGATAGGCCAAGGGGGGAGTGTCGTGAA
TCAGATTCGCGCCGATTCGGGATGTAGGGTGGACATCGAGAACACTCGTT
CCGGAGAGCATGCCCTGAGGGTGATTCGGATCACGGGCAGCGTTGCCCAG
ACCCAGGCGGCGCAGTCGATGATCCAAGAGAAGATCACGCAAGAGCCGAT
GTAAAAGAAAAAGAAGGAGAAAGGAAGAATGAAGGGGGAGTGGGGGAATG
GATGGGATAGGATGAGTAGGCTACTCTCGACCTTGGATTGGGGAAAGGGC
GTGGAGGAGGTAAAGAGCAAGTGGGCAGGCGGGAGTTTCGAAAGAGAAAC
CGTGAATGAAGGAAGACGAGGAAGATGAGAGGGAGTGCACGCAAGGCGAC
GGGGAAAGGGAGAAGGGGAGTGAGGGAGGAGGAGAGTGAGGGAGGAAGGG
AGAGAGAGAGAGAAGGGAGAAATGGCCTATAGAAAATGCAAAGGAGGGAG
AAGACATGCATGATTAAGACCACACGAAAAAAGAAAAACGGGAGAGGAAG
AAATAGAGGAGAAAGGAGAGAAGAAGAGAGGAAAGGTGATCTTGCGCAGG
ATATCAATGGCAAAAAGGAGGAGGGATAGGGCTCGCAAGATTACCAGGAC
TGGAAAAAGGTTTGCGCACCAGAAAGAGAAGATGACGAAGTGAGAAAGAA
TAGAAAGGAGAAGGGAGAATAGAAGGGAAAAAGTGCGAAGGTGAGAGAGA
CGAAAGGAGTCGACGAAAGGGCCATCAGCAGGAGCAGCAGAAACCGAGGA
GCTCATAAACAGGAGCGCGACCAATAAGAGGTTTTGGTCCCTCCTTAACA
GCCGCTGCAGAAGAACAAGAAGAAGGCTTCTTCCCTCCTTGATTCCTACC
GCACAAGGGCCCGAATCTCTCCGTAAGTCCCAGCATCAAGTTTATCACCA
CACCACTACCTACCATCACCACTGTCAAAGCAACCTTATCTCCTACTCCG
GGCGCTAAGAAGTTGAAGAAGAAGAAGAAGGAGTCTAAGAGAGAGCAGAA
GAAGACCAGAAAGAAAGGAAAAAACCCACCTCGAAAACACACCAGAAGAA
AAGGAACATGCCCAATGGTTCTCACCGCCCCATTCTGCTCCTGATTTTTT
TCCCATTAGATCTCCACGCAGCTGGCAACAGGCGGAGACACATCAAGAAC
CCCACCTCCTAACCGCGGTGGCAGCGGCAAGTAGCCATTCCCTAGTCTCA
GAGTCCCTTCGAGTCTTCCCACTTTCACGTAGGGCCTGCTTACCCATCCC
CCACAACGGCGAAGGAAGAGCCCATCTCGGCGATACGATGAATGCCAGAG
ACGACGACGAAGAATTCGAAGAAAAGAGAAAAGATTAAACAGGCGCTAAC
CAATCAGCTAATATTCA back to topprotein sequence of jgi.p|Nanoce1779_2|599001 >mRNA_7507-protein ID=mRNA_7507-protein|Name=jgi.p|Nanoce1779_2|599001|organism=Nannochloropsis oceanica|type=polypeptide|length=429bp
MLNPTVGGPTSPLDDAHAYHHQYHQQQDNENSAPVGMDEHEDIGTEHGDD
KPQTTTTTTSSGSNRRRSSGAGRSSTGGRRLSASLANLSLSSGLEATTCL
LLPASRIGGVIGRGGDVIKGIRELTGTRIHISSASEDDRDPAFRPVTVSG
SVQEVCSAVELIARQAGLFENQQQQQGEGGEEEYYPQGIRMVIDSGNAGQ
LIGKKGATINEIRTQSQARIQVLSEDESAEEGALGMERVVILMGDAEACR
VAHKMICSLLAAAYAAAAGGGGVNSPSGQQQQHVQHVQHVQQHHHHAPVA
VGNSSSFFSGGDATPLSDAAFRQHDNAHASSSSFLHGTEHEAGGEGGGED
YDDSCEVIMRVPNDKIGRVIGQGGSVVNQIRADSGCRVDIENTRSGEHAL
RVIRITGSVAQTQAAQSMIQEKITQEPM* back to topmRNA from alignment at scaffold_20:135433..138514- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_7507 ID=mRNA_7507|Name=jgi.p|Nanoce1779_2|599001|organism=Nannochloropsis oceanica|type=mRNA|length=3082bp|location=Sequence derived from alignment at scaffold_20:135433..138514- (Nannochloropsis oceanica)
ACAGCTTCATTCTCAGCGCTCGGGCACGTTTGTTCCCCCCTTCGCTTTCC
TTTCCCCGCTCCTCGTCCTCCTTCCTTCTCCCACCACACTCGCGGTGCTA
TCACTTTCCTCCTCTCCTCTGAGCCGTCCCCCGACTCCGAATCCACCCTC
CACCACTCAGCCTTCCGAAACGAAAAGCTGTGTTGAGTAGGAGACTATTA
CATTCTAGCTAAGCATCACGTTTTAGCTAGAAGAAAGCAGGAACCACCCG
CTACCAGAGGAAAAGGAATGCTGAACCCCACGGTCGGTGGCCCTACTTCT
CCTTTGGACGACGCACACGCTTATCATCACCAGTATCACCAACAACAAGA
TAACGAAAACAGTGCACCGGTAGGGTAAGTCTTTTGCTTGATACAGACAG
AAGATAGGGTTGAGCGCCCTGCCTCCACTCCCCAAAACCTCCCAATCCCT
TCTCCCTCCACCCCCGTGCATCTGCTTACGCACGCATAGAGAGCACGTCA
ATGTCTTCACATCTTTGAAGGATATCCTCCCCTTCCTCATCAAAGTCCCA
CGTTTCATACATCTCCCTCCCATCCGTCAGGATGGACGAACACGAAGATA
TCGGCACGGAGCATGGCGACGACAAGCCCCAAACCACCACCACCACCACT
TCCAGCGGGAGCAACCGCCGTCGAAGCAGTGGCGCAGGGAGGAGCAGTAC
CGGCGGGCGTCGTTTGAGTGCTTCACTGGCGAATCTGTCTCTGTCTTCGG
GGTTGGAAGCGACGACATGCTTGTTGTTGCCCGCCTCGCGGATTGGGGGA
GTGATAGGGCGGGGAGGCGATGTTATTAAGGGCATTCGTGAATTGACGGG
GACACGGATTCATATAAGCTCCGCGTCAGAAGACGATCGTGATCCAGCTT
TTCGCCCCGTGACTGTGTCGGGGTCTGTCCAAGAAGTTTGCTCGGCCGTG
GAGCTGATTGCCCGGCAGGCGGGGCTGTTCGAGAACCAACAGCAGCAGCA
GGGAGAGGGGGGGGAAGAGGAGTACTATCCCCAGGGTATTCGGATGGTTA
TTGACAGCGGGAATGCCGGGCAGCTGATTGGGAAAAAGGGGGCGACGATC
AATGAGATCCGCACACAGTCCCAGGTAGGAAGGGAGGGAGGGAGGGAGAG
ATGGATGGAGGGAGGGAGAGAGCAAGGTGATTTTTTTTCTCAATCCTTCT
TTGCTTGCTTCCTACCTTTCTGTCGGTCCCTAGGCTCGTATCCAGGTGTT
GTCCGAGGATGAGAGCGCGGAGGAGGGAGCGCTGGGGATGGAGCGTGTGG
TGATCCTCATGGGCGATGCCGAGGCTTGCCGCGTGGCCCATAAGATGATC
TGCTCCTTGCTTGCGGCGGCCTATGCCGCTGCCGCTGGTGGCGGTGGCGT
GAACTCGCCCTCTGGTCAGCAGCAGCAGCACGTGCAGCACGTGCAGCACG
TGCAGCAGCACCACCACCATGCCCCCGTGGCCGTGGGTAACTCTTCGTCT
TTCTTCAGCGGGGGCGACGCCACGCCCCTGTCGGACGCGGCATTCCGCCA
GCACGACAACGCGCACGCCTCTTCATCCTCGTTCTTGCACGGGACAGAAC
ACGAGGCGGGGGGGGAGGGCGGTGGGGAGGATTACGACGACTCGTGCGAG
GTGATTATGCGCGTGCCGAATGACAAGATCGGGCGGGTGATAGGCCAAGG
GGGGAGTGTCGTGAATCAGATTCGCGCCGATTCGGGATGTAGGGTGGACA
TCGAGAACACTCGTTCCGGAGAGCATGCCCTGAGGGTGATTCGGATCACG
GGCAGCGTTGCCCAGACCCAGGCGGCGCAGTCGATGATCCAAGAGAAGAT
CACGCAAGAGCCGATGTAAAAGAAAAAGAAGGAGAAAGGAAGAATGAAGG
GGGAGTGGGGGAATGGATGGGATAGGATGAGTAGGCTACTCTCGACCTTG
GATTGGGGAAAGGGCGTGGAGGAGGTAAAGAGCAAGTGGGCAGGCGGGAG
TTTCGAAAGAGAAACCGTGAATGAAGGAAGACGAGGAAGATGAGAGGGAG
TGCACGCAAGGCGACGGGGAAAGGGAGAAGGGGAGTGAGGGAGGAGGAGA
GTGAGGGAGGAAGGGAGAGAGAGAGAGAAGGGAGAAATGGCCTATAGAAA
ATGCAAAGGAGGGAGAAGACATGCATGATTAAGACCACACGAAAAAAGAA
AAACGGGAGAGGAAGAAATAGAGGAGAAAGGAGAGAAGAAGAGAGGAAAG
GTGATCTTGCGCAGGATATCAATGGCAAAAAGGAGGAGGGATAGGGCTCG
CAAGATTACCAGGACTGGAAAAAGGTTTGCGCACCAGAAAGAGAAGATGA
CGAAGTGAGAAAGAATAGAAAGGAGAAGGGAGAATAGAAGGGAAAAAGTG
CGAAGGTGAGAGAGACGAAAGGAGTCGACGAAAGGGCCATCAGCAGGAGC
AGCAGAAACCGAGGAGCTCATAAACAGGAGCGCGACCAATAAGAGGTTTT
GGTCCCTCCTTAACAGCCGCTGCAGAAGAACAAGAAGAAGGCTTCTTCCC
TCCTTGATTCCTACCGCACAAGGGCCCGAATCTCTCCGTAAGTCCCAGCA
TCAAGTTTATCACCACACCACTACCTACCATCACCACTGTCAAAGCAACC
TTATCTCCTACTCCGGGCGCTAAGAAGTTGAAGAAGAAGAAGAAGGAGTC
TAAGAGAGAGCAGAAGAAGACCAGAAAGAAAGGAAAAAACCCACCTCGAA
AACACACCAGAAGAAAAGGAACATGCCCAATGGTTCTCACCGCCCCATTC
TGCTCCTGATTTTTTTCCCATTAGATCTCCACGCAGCTGGCAACAGGCGG
AGACACATCAAGAACCCCACCTCCTAACCGCGGTGGCAGCGGCAAGTAGC
CATTCCCTAGTCTCAGAGTCCCTTCGAGTCTTCCCACTTTCACGTAGGGC
CTGCTTACCCATCCCCCACAACGGCGAAGGAAGAGCCCATCTCGGCGATA
CGATGAATGCCAGAGACGACGACGAAGAATTCGAAGAAAAGAGAAAAGAT
TAAACAGGCGCTAACCAATCAGCTAATATTCA back to topCoding sequence (CDS) from alignment at scaffold_20:135433..138514- >mRNA_7507 ID=mRNA_7507|Name=jgi.p|Nanoce1779_2|599001|organism=Nannochloropsis oceanica|type=CDS|length=3861bp|location=Sequence derived from alignment at scaffold_20:135433..138514- (Nannochloropsis oceanica)
GCTCGTATCCAGGTGTTGTCCGAGGATGAGAGCGCGGAGGAGGGAGCGCT
GGGGATGGAGCGTGTGGTGATCCTCATGGGCGATGCCGAGGCTTGCCGCG
TGGCCCATAAGATGATCTGCTCCTTGCTTGCGGCGGCCTATGCCGCTGCC
GCTGGTGGCGGTGGCGTGAACTCGCCCTCTGGTCAGCAGCAGCAGCACGT
GCAGCACGTGCAGCACGTGCAGCAGCACCACCACCATGCCCCCGTGGCCG
TGGGTAACTCTTCGTCTTTCTTCAGCGGGGGCGACGCCACGCCCCTGTCG
GACGCGGCATTCCGCCAGCACGACAACGCGCACGCCTCTTCATCCTCGTT
CTTGCACGGGACAGAACACGAGGCGGGGGGGGAGGGCGGTGGGGAGGATT
ACGACGACTCGTGCGAGGTGATTATGCGCGTGCCGAATGACAAGATCGGG
CGGGTGATAGGCCAAGGGGGGAGTGTCGTGAATCAGATTCGCGCCGATTC
GGGATGTAGGGTGGACATCGAGAACACTCGTTCCGGAGAGCATGCCCTGA
GGGTGATTCGGATCACGGGCAGCGTTGCCCAGACCCAGGCGGCGCAGTCG
ATGATCCAAGAGAAGATCACGCAAGAGCCGATGTAAGATGGACGAACACG
AAGATATCGGCACGGAGCATGGCGACGACAAGCCCCAAACCACCACCACC
ACCACTTCCAGCGGGAGCAACCGCCGTCGAAGCAGTGGCGCAGGGAGGAG
CAGTACCGGCGGGCGTCGTTTGAGTGCTTCACTGGCGAATCTGTCTCTGT
CTTCGGGGTTGGAAGCGACGACATGCTTGTTGTTGCCCGCCTCGCGGATT
GGGGGAGTGATAGGGCGGGGAGGCGATGTTATTAAGGGCATTCGTGAATT
GACGGGGACACGGATTCATATAAGCTCCGCGTCAGAAGACGATCGTGATC
CAGCTTTTCGCCCCGTGACTGTGTCGGGGTCTGTCCAAGAAGTTTGCTCG
GCCGTGGAGCTGATTGCCCGGCAGGCGGGGCTGTTCGAGAACCAACAGCA
GCAGCAGGGAGAGGGGGGGGAAGAGGAGTACTATCCCCAGGGTATTCGGA
TGGTTATTGACAGCGGGAATGCCGGGCAGCTGATTGGGAAAAAGGGGGCG
ACGATCAATGAGATCCGCACACAGTCCCAGATGCTGAACCCCACGGTCGG
TGGCCCTACTTCTCCTTTGGACGACGCACACGCTTATCATCACCAGTATC
ACCAACAACAAGATAACGAAAACAGTGCACCGGTAGGGCTCGTATCCAGG
TGTTGTCCGAGGATGAGAGCGCGGAGGAGGGAGCGCTGGGGATGGAGCGT
GTGGTGATCCTCATGGGCGATGCCGAGGCTTGCCGCGTGGCCCATAAGAT
GATCTGCTCCTTGCTTGCGGCGGCCTATGCCGCTGCCGCTGGTGGCGGTG
GCGTGAACTCGCCCTCTGGTCAGCAGCAGCAGCACGTGCAGCACGTGCAG
CACGTGCAGCAGCACCACCACCATGCCCCCGTGGCCGTGGGTAACTCTTC
GTCTTTCTTCAGCGGGGGCGACGCCACGCCCCTGTCGGACGCGGCATTCC
GCCAGCACGACAACGCGCACGCCTCTTCATCCTCGTTCTTGCACGGGACA
GAACACGAGGCGGGGGGGGAGGGCGGTGGGGAGGATTACGACGACTCGTG
CGAGGTGATTATGCGCGTGCCGAATGACAAGATCGGGCGGGTGATAGGCC
AAGGGGGGAGTGTCGTGAATCAGATTCGCGCCGATTCGGGATGTAGGGTG
GACATCGAGAACACTCGTTCCGGAGAGCATGCCCTGAGGGTGATTCGGAT
CACGGGCAGCGTTGCCCAGACCCAGGCGGCGCAGTCGATGATCCAAGAGA
AGATCACGCAAGAGCCGATGTAAGATGGACGAACACGAAGATATCGGCAC
GGAGCATGGCGACGACAAGCCCCAAACCACCACCACCACCACTTCCAGCG
GGAGCAACCGCCGTCGAAGCAGTGGCGCAGGGAGGAGCAGTACCGGCGGG
CGTCGTTTGAGTGCTTCACTGGCGAATCTGTCTCTGTCTTCGGGGTTGGA
AGCGACGACATGCTTGTTGTTGCCCGCCTCGCGGATTGGGGGAGTGATAG
GGCGGGGAGGCGATGTTATTAAGGGCATTCGTGAATTGACGGGGACACGG
ATTCATATAAGCTCCGCGTCAGAAGACGATCGTGATCCAGCTTTTCGCCC
CGTGACTGTGTCGGGGTCTGTCCAAGAAGTTTGCTCGGCCGTGGAGCTGA
TTGCCCGGCAGGCGGGGCTGTTCGAGAACCAACAGCAGCAGCAGGGAGAG
GGGGGGGAAGAGGAGTACTATCCCCAGGGTATTCGGATGGTTATTGACAG
CGGGAATGCCGGGCAGCTGATTGGGAAAAAGGGGGCGACGATCAATGAGA
TCCGCACACAGTCCCAGATGCTGAACCCCACGGTCGGTGGCCCTACTTCT
CCTTTGGACGACGCACACGCTTATCATCACCAGTATCACCAACAACAAGA
TAACGAAAACAGTGCACCGGTAGGGCTCGTATCCAGGTGTTGTCCGAGGA
TGAGAGCGCGGAGGAGGGAGCGCTGGGGATGGAGCGTGTGGTGATCCTCA
TGGGCGATGCCGAGGCTTGCCGCGTGGCCCATAAGATGATCTGCTCCTTG
CTTGCGGCGGCCTATGCCGCTGCCGCTGGTGGCGGTGGCGTGAACTCGCC
CTCTGGTCAGCAGCAGCAGCACGTGCAGCACGTGCAGCACGTGCAGCAGC
ACCACCACCATGCCCCCGTGGCCGTGGGTAACTCTTCGTCTTTCTTCAGC
GGGGGCGACGCCACGCCCCTGTCGGACGCGGCATTCCGCCAGCACGACAA
CGCGCACGCCTCTTCATCCTCGTTCTTGCACGGGACAGAACACGAGGCGG
GGGGGGAGGGCGGTGGGGAGGATTACGACGACTCGTGCGAGGTGATTATG
CGCGTGCCGAATGACAAGATCGGGCGGGTGATAGGCCAAGGGGGGAGTGT
CGTGAATCAGATTCGCGCCGATTCGGGATGTAGGGTGGACATCGAGAACA
CTCGTTCCGGAGAGCATGCCCTGAGGGTGATTCGGATCACGGGCAGCGTT
GCCCAGACCCAGGCGGCGCAGTCGATGATCCAAGAGAAGATCACGCAAGA
GCCGATGTAAGATGGACGAACACGAAGATATCGGCACGGAGCATGGCGAC
GACAAGCCCCAAACCACCACCACCACCACTTCCAGCGGGAGCAACCGCCG
TCGAAGCAGTGGCGCAGGGAGGAGCAGTACCGGCGGGCGTCGTTTGAGTG
CTTCACTGGCGAATCTGTCTCTGTCTTCGGGGTTGGAAGCGACGACATGC
TTGTTGTTGCCCGCCTCGCGGATTGGGGGAGTGATAGGGCGGGGAGGCGA
TGTTATTAAGGGCATTCGTGAATTGACGGGGACACGGATTCATATAAGCT
CCGCGTCAGAAGACGATCGTGATCCAGCTTTTCGCCCCGTGACTGTGTCG
GGGTCTGTCCAAGAAGTTTGCTCGGCCGTGGAGCTGATTGCCCGGCAGGC
GGGGCTGTTCGAGAACCAACAGCAGCAGCAGGGAGAGGGGGGGGAAGAGG
AGTACTATCCCCAGGGTATTCGGATGGTTATTGACAGCGGGAATGCCGGG
CAGCTGATTGGGAAAAAGGGGGCGACGATCAATGAGATCCGCACACAGTC
CCAGATGCTGAACCCCACGGTCGGTGGCCCTACTTCTCCTTTGGACGACG
CACACGCTTATCATCACCAGTATCACCAACAACAAGATAACGAAAACAGT
GCACCGGTAGG back to top
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