jgi.p|Nanoce1779_2|158235, mRNA_7506 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|158235
Unique NamemRNA_7506
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length506
Alignment locationscaffold_20:135955..136559 +

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Properties
Property NameValue
TranscriptId158321
TrackFilteredModels2
ProteinId158235
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:135955..136559 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|158235gene_7506Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|158235mRNA_7506-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7506CDS_7506Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7506 ID=mRNA_7506|Name=jgi.p|Nanoce1779_2|158235|organism=Nannochloropsis oceanica|type=mRNA|length=506bp
GAATCAAGGAGGGAAGAAGCCTTCTTCTTGTTCTTCTGCAGCGGCTGTTA
AGGAGGGACCAAAACCTCTTATTGGTCGCGCTCCTGTTTATGAGCTCCTC
GGTTTCTGCTGCTCCTGCTGATGGCCCTTTCGTCGACTCCTTTCGTCTCT
CTCACCTTCGCACTTTTTCCCTTCTATTCTCCCTTCTCCTTTCTATTCTT
TCTCACTTCGTCATCTTCTCTTTCTGGTGCGCAAACCTTTTTCCAGTCCT
GGTAATCTTGCGAGCCCTATCCCTCCTCCTTTTTGCCATTGATATCCTGC
GCAAGATCACCTTTCCTCTCTTCTTCTCTCCTTTCTCCTCTATTTCTTCC
TCTCCCGTTTTTCTTTTTTCGTGTGGTCTTAATCATGCATGTCTTCTCCC
TCCTTTGCATTTTCTATAGGCCATTTCTCGTCTTCCTTCATTCACGGTTT
CTCTTTCGAAACTCCCGCCTGCCCACTTGCTCTTTACCTCCTCCACGCCC
TTTCCC
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protein sequence of jgi.p|Nanoce1779_2|158235

>mRNA_7506-protein ID=mRNA_7506-protein|Name=jgi.p|Nanoce1779_2|158235|organism=Nannochloropsis oceanica|type=polypeptide|length=110bp
MSSSVSAAPADGPFVDSFRLSHLRTFSLLFSLLLSILSHFVIFSFWCANL
FPVLVILRALSLLLFAIDILRKITFPLFFSPFSSISSSPVFLFSCGLNHA
CLLPPLHFL*
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mRNA from alignment at scaffold_20:135955..136559+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7506 ID=mRNA_7506|Name=jgi.p|Nanoce1779_2|158235|organism=Nannochloropsis oceanica|type=mRNA|length=605bp|location=Sequence derived from alignment at scaffold_20:135955..136559+ (Nannochloropsis oceanica)
GAATCAAGGAGGGAAGAAGCCTTCTTCTTGTTCTTCTGCAGCGGCTGTTA
AGGAGGGACCAAAACCTCTTATTGGTCGCGCTCCTGTTTATGAGCTCCTC
GGTTTCTGCTGCTCCTGCTGATGGCCCTTTCGTCGACTCCTTTCGTCTCT
CTCACCTTCGCACTTTTTCCCTTCTATTCTCCCTTCTCCTTTCTATTCTT
TCTCACTTCGTCATCTTCTCTTTCTGGTGCGCAAACCTTTTTCCAGTCCT
GGTAATCTTGCGAGCCCTATCCCTCCTCCTTTTTGCCATTGATATCCTGC
GCAAGATCACCTTTCCTCTCTTCTTCTCTCCTTTCTCCTCTATTTCTTCC
TCTCCCGTTTTTCTTTTTTCGTGTGGTCTTAATCATGCATGTCTTCTCCC
TCCTTTGCATTTTCTATAGGCCATTTCTCCCTTCTCTCTCTCTCTCCCTT
CCTCCCTCACTCTCCTCCTCCCTCACTCCCCTTCTCCCTTTCCCCGTCGC
CTTGCGTGCACTCCCTCTCATCTTCCTCGTCTTCCTTCATTCACGGTTTC
TCTTTCGAAACTCCCGCCTGCCCACTTGCTCTTTACCTCCTCCACGCCCT
TTCCC
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Coding sequence (CDS) from alignment at scaffold_20:135955..136559+

>mRNA_7506 ID=mRNA_7506|Name=jgi.p|Nanoce1779_2|158235|organism=Nannochloropsis oceanica|type=CDS|length=330bp|location=Sequence derived from alignment at scaffold_20:135955..136559+ (Nannochloropsis oceanica)
ATGAGCTCCTCGGTTTCTGCTGCTCCTGCTGATGGCCCTTTCGTCGACTC
CTTTCGTCTCTCTCACCTTCGCACTTTTTCCCTTCTATTCTCCCTTCTCC
TTTCTATTCTTTCTCACTTCGTCATCTTCTCTTTCTGGTGCGCAAACCTT
TTTCCAGTCCTGGTAATCTTGCGAGCCCTATCCCTCCTCCTTTTTGCCAT
TGATATCCTGCGCAAGATCACCTTTCCTCTCTTCTTCTCTCCTTTCTCCT
CTATTTCTTCCTCTCCCGTTTTTCTTTTTTCGTGTGGTCTTAATCATGCA
TGTCTTCTCCCTCCTTTGCATTTTCTATAG
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Synonyms
Publications