jgi.p|Nanoce1779_2|632296, mRNA_7505 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|632296
Unique Name	mRNA_7505
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1434
Alignment location	scaffold_20:132230..133990 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	632382
Track	FilteredModels2
ProteinId	632296

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_20	supercontig	scaffold_20:132230..133990 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|632296	gene_7505	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|632296	mRNA_7505-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7505	CDS_7505	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_20:132230..133990+
coding sequence from alignment at scaffold_20:132230..133990+

mRNA sequence

>mRNA_7505 ID=mRNA_7505|Name=jgi.p|Nanoce1779_2|632296|organism=Nannochloropsis oceanica|type=mRNA|length=1434bp
CTCTGATATCTAGCCATTTATCACAAATATGCAACACAAAAGTATGCATA
GAGCATGCCAAGCACGCTGCTAGCAGGCTCTCCACCTCGTCTCCGCTCTC
CCACCGAAATTGCGGCTACGCAGCGTTCCACCAAATCCATGCTCACCCCT
CCCTACCTCTTCCCCCCTGCAACTGCTACCTCACGATATACGCAGGCATA
TCCCAAGCACAAAAGGTATGTCGTCCAGCACCACCCCTCCCTCCTTCTCC
TCCTCCTCCCCATCCTGCTCCTCGTCTTGTCGCCCCTCAAATCACCACCA
CCAGCATCTACCAAGAAAAAGCCTTTCGTCCTCCGCCTCCTCAATTTCCT
CCCCCTCCCACCAACCCTTCCGTCTCTCCGGCACTCTCTACAAACGCAAA
GACCATTTAACCTGGAAATGGCGTCCGCGTCTCTTTCTAACCCACCACGA
AGATTTTCTCCTCTTTTACTACCTGCCGTCTACTTCCCCTTCAACAGCCC
CTCCTAGGGGGGTAGTGCCTTTGGCAGGGTGTGAAGCACGAGTGATGGAT
CGGGACGAAGTGAGAGGCTCTGATAGAAAATACCCTTTTGAATTGAGGCA
TGCATGGTTGGATAAGCCCTGGGTATTGGCTGCGAGGAGTGAGGAGGAGA
GGAGGAATTGGGTGGAAGGGTTGAGGAGGCTGAGGAAGGAAGCGCAGGCA
GCGATGAGGGAGAGTGTGTGGGGAGAGATGGAGGGAGGGAGAAGGAGGAT
GGATGAGGGGCAGGAAGAGGAAGAGTTGGAGGAGGGGGAGGAGGAGGAAG
CGGATGAGGGGGAGGACGGGCATTTGGGGAGGTTAGTGTGGCCAGGGTAT
GAGGAGGAGGTGGGGACGGCAATGAAACGGGTGTTGGAGTTCGCCGAGCC
CTCCAACGGCTGGAAGCTGCAATTCACCAAGCATGGAGTCAGTGCGTACC
GGAGGGAAGTGCCAAACACAAACGACTCCTTTACGACCCTCAAGGGCCAG
GGGGTGGTGCCGCATCATCCAGTGGCGATGCTGATGGGTATAATTGATAA
CACCATTGGAGCCGAGATCGACCGTCAGTACGACTACGGCCACCGGGTTC
GCGTCTTGAACCACCACAACTGGATCGACTACCTCAAGTATAAAGGCGTG
GCTATTGTCGCCCCCCGGGACATGTACTTGTATGTGCACTGGCGGGTACT
GGAGCAGGAGGAGGCGAAGGAAGAGGGGAGGGATGAGGGGATGGAGGGCA
GGGTCTGTGGGCCAGCAATAGTCGTCGTTGTTTTTTCCGACCCCCCTCCT
TCCCTCCTTCCCTCCCTCGCTACCCCTCGTCCCCTTCACCATGGTTGTGT
ACGCGCCGAGTGCATTACAGCTGGGTGGGTCCTACGTCCTGTTCTTGTCC
ACGAAAAAAAGGAAAAGGAAGGGGAGGGAGGGAG

protein sequence of jgi.p|Nanoce1779_2|632296

>mRNA_7505-protein ID=mRNA_7505-protein|Name=jgi.p|Nanoce1779_2|632296|organism=Nannochloropsis oceanica|type=polypeptide|length=405bp
MSSSTTPPSFSSSSPSCSSSCRPSNHHHQHLPRKSLSSSASSISSPSHQP
FRLSGTLYKRKDHLTWKWRPRLFLTHHEDFLLFYYLPSTSPSTAPPRGVV
PLAGCEARVMDRDEVRGSDRKYPFELRHAWLDKPWVLAARSEEERRNWVE
GLRRLRKEAQAAMRESVWGEMEGGRRRMDEGQEEEELEEGEEEEADEGED
GHLGRLVWPGYEEEVGTAMKRVLEFAEPSNGWKLQFTKHGVSAYRREVPN
TNDSFTTLKGQGVVPHHPVAMLMGIIDNTIGAEIDRQYDYGHRVRVLNHH
NWIDYLKYKGVAIVAPRDMYLYVHWRVLEQEEAKEEGRDEGMEGRVCGPA
IVVVVFSDPPPSLLPSLATPRPLHHGCVRAECITAGWVLRPVLVHEKKEK
EGEGG

mRNA from alignment at scaffold_20:132230..133990+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7505 ID=mRNA_7505|Name=jgi.p|Nanoce1779_2|632296|organism=Nannochloropsis oceanica|type=mRNA|length=1761bp|location=Sequence derived from alignment at scaffold_20:132230..133990+ (Nannochloropsis oceanica)
CTCTGATATCTAGCCATTTATCACAAATATGCAACACAAAAGTATGCATA
GAGCATGCCAAGCACGCTGCTAGCAGGCTCTCCACCTCGTCTCCGCTCTC
CCACCGAAATTGCGGCTACGCAGCGTTCCACCAAATCCATGCTCACCCCT
CCCTACCTCTTCCCCCCTGCAACTGCTACCTCACGATATACGCAGGCATA
TCCCAAGCACAAAAGGTATGTCGTCCAGCACCACCCCTCCCTCCTTCTCC
TCCTCCTCCCCATCCTGCTCCTCGTCTTGTCGCCCCTCAAATCACCACCA
CCAGCATCTACCAAGAAAAAGCCTTTCGTCCTCCGCCTCCTCAATTTCCT
CCCCCTCCCACCAACCCTTCCGTCTCTCCGGCACTCTCTACAAACGCAAA
GACCATTTAACCTGGAAATGGCGTCCGCGTCTCTTTCTAACCCACCACGA
AGATTTTCTCCTCTTTTACTACCTGCCGTCTACTTCCCCTTCAACAGCCC
CTCCTAGGGGGGTAGTGCCTTTGGCAGGGTGTGAAGCACGAGTGATGGAT
CGGGACGAAGTGAGAGGCTCTGATAGAAAATACCCTTTTGAATTGAGGCA
TGCATGGTTGGATAAGCCCTGGGTATTGGCTGCGAGGAGTGAGGAGGAGA
GGAGGAATTGGGTGGAAGGGTTGAGGAGGCTGAGGAAGGAAGCGCAGGCA
GCGATGAGGGAGAGTGTGTGGGGAGAGATGGAGGGAGGGAGAAGGAGGAT
GGATGAGGGGCAGGAAGAGGAAGAGTTGGAGGAGGGGGAGGAGGAGGAAG
CGGATGAGGGGGAGGACGGGCATTTGGGGAGGTTAGTGTGGCCAGGGTAT
GAGGAGGAGGTGGGGACGGCAATGAAACGGGTGTTGGAGTTCGCCGAGGT
GCGTGATTCAAACTGTCAATCACCCATTCATCTGTCCACCAATCGATCTT
TTGAATTATAGACTAATTACTCCTCATTTCGCGTATTCATACTTATCCTA
CTATTTCATCCTATCCCTCCCTCCCCTTCAGCCCTCCAACGGCTGGAAGC
TGCAATTCACCAAGCATGGAGTCAGTGCGTACCGGAGGGAAGTGCCAAAC
ACAAACGACTCCTTTACGACCCTCAAGGGCCAGGGGGTGGTGCCGCATCA
TCCAGTGGCGATGCTGATGGGTATAATTGATAACACCATTGGAGCCGGTA
CGTGTATATTATTAATTGTTTTTTGGTGTATTTATTTATTTGTATATTTA
ATTGTATTTGTTTATTTATTTATCCATTTATCCATCTATTCATCTATTAA
TTCATCTATTTATGGATTTATGAATTCGCGTATTCATAGATTCATGCATT
TAATGTATATCTTACACAATTGTAATAATCCTTGCCAACAGAGATCGACC
GTCAGTACGACTACGGCCACCGGGTTCGCGTCTTGAACCACCACAACTGG
ATCGACTACCTCAAGTATAAAGGCGTGGCTATTGTCGCCCCCCGGGACAT
GTACTTGTATGTGCACTGGCGGGTACTGGAGCAGGAGGAGGCGAAGGAAG
AGGGGAGGGATGAGGGGATGGAGGGCAGGGTCTGTGGGCCAGCAATAGTC
GTCGTTGTTTTTTCCGACCCCCCTCCTTCCCTCCTTCCCTCCCTCGCTAC
CCCTCGTCCCCTTCACCATGGTTGTGTACGCGCCGAGTGCATTACAGCTG
GGTGGGTCCTACGTCCTGTTCTTGTCCACGAAAAAAAGGAAAAGGAAGGG
GAGGGAGGGAG

Coding sequence (CDS) from alignment at scaffold_20:132230..133990+

>mRNA_7505 ID=mRNA_7505|Name=jgi.p|Nanoce1779_2|632296|organism=Nannochloropsis oceanica|type=CDS|length=3645bp|location=Sequence derived from alignment at scaffold_20:132230..133990+ (Nannochloropsis oceanica)
ATGTCGTCCAGCACCACCCCTCCCTCCTTCTCCTCCTCCTCCCCATCCTG
CTCCTCGTCTTGTCGCCCCTCAAATCACCACCACCAGCATCTACCAAGAA
AAAGCCTTTCGTCCTCCGCCTCCTCAATTTCCTCCCCCTCCCACCAACCC
TTCCGTCTCTCCGGCACTCTCTACAAACGCAAAGACCATTTAACCTGGAA
ATGGCGTCCGCGTCTCTTTCTAACCCACCACGAAGATTTTCTCCTCTTTT
ACTACCTGCCGTCTACTTCCCCTTCAACAGCCCCTCCTAGGGGGGTAGTG
CCTTTGGCAGGGTGTGAAGCACGAGTGATGGATCGGGACGAAGTGAGAGG
CTCTGATAGAAAATACCCTTTTGAATTGAGGCATGCATGGTTGGATAAGC
CCTGGGTATTGGCTGCGAGGAGTGAGGAGGAGAGGAGGAATTGGGTGGAA
GGGTTGAGGAGGCTGAGGAAGGAAGCGCAGGCAGCGATGAGGGAGAGTGT
GTGGGGAGAGATGGAGGGAGGGAGAAGGAGGATGGATGAGGGGCAGGAAG
AGGAAGAGTTGGAGGAGGGGGAGGAGGAGGAAGCGGATGAGGGGGAGGAC
GGGCATTTGGGGAGGTTAGTGTGGCCAGGGTATGAGGAGGAGGTGGGGAC
GGCAATGAAACGGGTGTTGGAGTTCGCCGAGCCCTCCAACGGCTGGAAGC
TGCAATTCACCAAGCATGGAGTCAGTGCGTACCGGAGGGAAGTGCCAAAC
ACAAACGACTCCTTTACGACCCTCAAGGGCCAGGGGGTGGTGCCGCATCA
TCCAGTGGCGATGCTGATGGGTATAATTGATAACACCATTGGAGCCGAGA
TCGACCGTCAGTACGACTACGGCCACCGGGTTCGCGTCTTGAACCACCAC
AACTGGATCGACTACCTCAAGTATAAAGGCGTGGCTATTGTCGCCCCCCG
GGACATGTACTTGTATGTGCACTGGCGGGTACTGGAGCAGGAGGAGGCGA
AGGAAGAGGGGAGGGATGAGGGGATGGAGGGCAGGGTCTGTGGGCCAGCA
ATAGTCGTCGTTGTTTTTTCCGACCCCCCTCCTTCCCTCCTTCCCTCCCT
CGCTACCCCTCGTCCCCTTCACCATGGTTGTGTACGCGCCGAGTGCATTA
CAGCTGGGTGGGTCCTACGTCCTGTTCTTGTCCACGAAAAAAAGGAAAAG
GAAGGGGAGGGAGGGATGTCGTCCAGCACCACCCCTCCCTCCTTCTCCTC
CTCCTCCCCATCCTGCTCCTCGTCTTGTCGCCCCTCAAATCACCACCACC
AGCATCTACCAAGAAAAAGCCTTTCGTCCTCCGCCTCCTCAATTTCCTCC
CCCTCCCACCAACCCTTCCGTCTCTCCGGCACTCTCTACAAACGCAAAGA
CCATTTAACCTGGAAATGGCGTCCGCGTCTCTTTCTAACCCACCACGAAG
ATTTTCTCCTCTTTTACTACCTGCCGTCTACTTCCCCTTCAACAGCCCCT
CCTAGGGGGGTAGTGCCTTTGGCAGGGTGTGAAGCACGAGTGATGGATCG
GGACGAAGTGAGAGGCTCTGATAGAAAATACCCTTTTGAATTGAGGCATG
CATGGTTGGATAAGCCCTGGGTATTGGCTGCGAGGAGTGAGGAGGAGAGG
AGGAATTGGGTGGAAGGGTTGAGGAGGCTGAGGAAGGAAGCGCAGGCAGC
GATGAGGGAGAGTGTGTGGGGAGAGATGGAGGGAGGGAGAAGGAGGATGG
ATGAGGGGCAGGAAGAGGAAGAGTTGGAGGAGGGGGAGGAGGAGGAAGCG
GATGAGGGGGAGGACGGGCATTTGGGGAGGTTAGTGTGGCCAGGGTATGA
GGAGGAGGTGGGGACGGCAATGAAACGGGTGTTGGAGTTCGCCGAGCCCT
CCAACGGCTGGAAGCTGCAATTCACCAAGCATGGAGTCAGTGCGTACCGG
AGGGAAGTGCCAAACACAAACGACTCCTTTACGACCCTCAAGGGCCAGGG
GGTGGTGCCGCATCATCCAGTGGCGATGCTGATGGGTATAATTGATAACA
CCATTGGAGCCGAGATCGACCGTCAGTACGACTACGGCCACCGGGTTCGC
GTCTTGAACCACCACAACTGGATCGACTACCTCAAGTATAAAGGCGTGGC
TATTGTCGCCCCCCGGGACATGTACTTGTATGTGCACTGGCGGGTACTGG
AGCAGGAGGAGGCGAAGGAAGAGGGGAGGGATGAGGGGATGGAGGGCAGG
GTCTGTGGGCCAGCAATAGTCGTCGTTGTTTTTTCCGACCCCCCTCCTTC
CCTCCTTCCCTCCCTCGCTACCCCTCGTCCCCTTCACCATGGTTGTGTAC
GCGCCGAGTGCATTACAGCTGGGTGGGTCCTACGTCCTGTTCTTGTCCAC
GAAAAAAAGGAAAAGGAAGGGGAGGGAGGGATGTCGTCCAGCACCACCCC
TCCCTCCTTCTCCTCCTCCTCCCCATCCTGCTCCTCGTCTTGTCGCCCCT
CAAATCACCACCACCAGCATCTACCAAGAAAAAGCCTTTCGTCCTCCGCC
TCCTCAATTTCCTCCCCCTCCCACCAACCCTTCCGTCTCTCCGGCACTCT
CTACAAACGCAAAGACCATTTAACCTGGAAATGGCGTCCGCGTCTCTTTC
TAACCCACCACGAAGATTTTCTCCTCTTTTACTACCTGCCGTCTACTTCC
CCTTCAACAGCCCCTCCTAGGGGGGTAGTGCCTTTGGCAGGGTGTGAAGC
ACGAGTGATGGATCGGGACGAAGTGAGAGGCTCTGATAGAAAATACCCTT
TTGAATTGAGGCATGCATGGTTGGATAAGCCCTGGGTATTGGCTGCGAGG
AGTGAGGAGGAGAGGAGGAATTGGGTGGAAGGGTTGAGGAGGCTGAGGAA
GGAAGCGCAGGCAGCGATGAGGGAGAGTGTGTGGGGAGAGATGGAGGGAG
GGAGAAGGAGGATGGATGAGGGGCAGGAAGAGGAAGAGTTGGAGGAGGGG
GAGGAGGAGGAAGCGGATGAGGGGGAGGACGGGCATTTGGGGAGGTTAGT
GTGGCCAGGGTATGAGGAGGAGGTGGGGACGGCAATGAAACGGGTGTTGG
AGTTCGCCGAGCCCTCCAACGGCTGGAAGCTGCAATTCACCAAGCATGGA
GTCAGTGCGTACCGGAGGGAAGTGCCAAACACAAACGACTCCTTTACGAC
CCTCAAGGGCCAGGGGGTGGTGCCGCATCATCCAGTGGCGATGCTGATGG
GTATAATTGATAACACCATTGGAGCCGAGATCGACCGTCAGTACGACTAC
GGCCACCGGGTTCGCGTCTTGAACCACCACAACTGGATCGACTACCTCAA
GTATAAAGGCGTGGCTATTGTCGCCCCCCGGGACATGTACTTGTATGTGC
ACTGGCGGGTACTGGAGCAGGAGGAGGCGAAGGAAGAGGGGAGGGATGAG
GGGATGGAGGGCAGGGTCTGTGGGCCAGCAATAGTCGTCGTTGTTTTTTC
CGACCCCCCTCCTTCCCTCCTTCCCTCCCTCGCTACCCCTCGTCCCCTTC
ACCATGGTTGTGTACGCGCCGAGTGCATTACAGCTGGGTGGGTCCTACGT
CCTGTTCTTGTCCACGAAAAAAAGGAAAAGGAAGGGGAGGGAGGG

Synonyms

Publications