jgi.p|Nanoce1779_2|641186, mRNA_7504 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|641186
Unique Name	mRNA_7504
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1350
Alignment location	scaffold_20:129763..131901 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	641272
Track	FilteredModels2
ProteinId	641186

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_20	supercontig	scaffold_20:129763..131901 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|641186	gene_7504	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|641186	mRNA_7504-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7504	CDS_7504	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_20:129763..131901-
coding sequence from alignment at scaffold_20:129763..131901-

mRNA sequence

>mRNA_7504 ID=mRNA_7504|Name=jgi.p|Nanoce1779_2|641186|organism=Nannochloropsis oceanica|type=mRNA|length=1350bp
ATGAGCCTCGAGGAGGAGGAGGAAGACCTTCTGGCCGATTTTATGGCCCC
TCTTGCAGCCTCTGCTAAGCGAAAAACGAGCACCAGCAGCAGCTACGTGC
CTCTCTCCCTTTCCTCCATCGATGCCACCAAGAAGGACACGTTTTCTCTG
AGTAATTTGATAAAGGAGCAAGAGAAGGAGAAGCGCGCTTTGGAGCATCT
AAGGGGTGACGGGGGAGGAGAAGAGGAGGGAGGAGGAGGGACGAGGGTGT
CTTCAGTGTCGTCGTTTGACAGGATCGTGAAGACGGAGGAGATGTTGTTG
AGTATGAGTAGTAGTGAGAGTGAGGGAGAGATGGAGGAGGAGGAAGATAG
GCAAGATAAGGGAAAAGAAAGGGAAAAGCAGGGAAAGAAAAAAACGAAGA
ATGGGTTTGGTAACTTCGTCTATAGGAATGGCGGGGAAAGAGGGGAGGAG
GACAAGGAGTCAGACCTGGACATGGAGAGGGAGGAATTTGTGGAGTGGTT
GGGTCTTACAAGCGTCTTCACCATGCGTCAGGAAGATGATGGGGAGGAGG
GGGAATGGGGAGGCATGGTGGTGCCTTCCCCTCTTCTTCCTTCGAGCGGC
AGAGGGAGAGGGGGAGGGGATGGCAACGCACGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAACAGCATCAGCAACAGCAGCAGTAACAATAAGAACG
CGAATGTTCTCGAGCAGTACGGGAAACTGGCCGAAGCTCTGGAAGATGCA
GAGCACCAAGGGACCCTCCCCGACCTCCTTTCCCTTCTTGCTCCTTCACG
CTGGCTTGCCTCGCAGCAGCTTCCCCCTCCCTCCCTCCTCATCACCAACC
TTTGGAAGGTGATGACGTGGCACGCTGACCCTGTCTTGGCACATGCTTCA
TATTTGAATTTAAGGAAGTTGATGCCGATGAAGGGGAGGGAGGGAGGGAA
GGAGGGAGGGTGGAGATTGGAAGGAGCGTTGATCCAGGAACTCTTCAGGG
GATTCGGGGTTTTTGTGGGAGGAAAGGAAGCGGAGGAGGGCGAGGAAGAG
GGAGGGAAGGAGGACGGGGGAGGAGGTGGGTGCGATGTGACCTCCCCTTT
GTTGGTTTCGTCATCGTCCTCGCTCCCTTCCTCGTCCTCGTCCTCCTGGG
GCTACCCCCACCCTGTGTTGAGGCGCGCGATAGACACAACCCACTTAGAC
CACGCCGTTGATCACGACGAGGACGATGAAGAGGAGGAAGGCGGGAAGGA
GGACAAGGAAGCGAGGGAAGGAGGGAAGGAAGGGACAGAGGGAGGGGTAT
GCGGGGGAGGTGGCGCGACGGGTAATGGGCTTGGACAGGACAAGGATTAG

protein sequence of jgi.p|Nanoce1779_2|641186

>mRNA_7504-protein ID=mRNA_7504-protein|Name=jgi.p|Nanoce1779_2|641186|organism=Nannochloropsis oceanica|type=polypeptide|length=450bp
MSLEEEEEDLLADFMAPLAASAKRKTSTSSSYVPLSLSSIDATKKDTFSL
SNLIKEQEKEKRALEHLRGDGGGEEEGGGGTRVSSVSSFDRIVKTEEMLL
SMSSSESEGEMEEEEDRQDKGKEREKQGKKKTKNGFGNFVYRNGGERGEE
DKESDLDMEREEFVEWLGLTSVFTMRQEDDGEEGEWGGMVVPSPLLPSSG
RGRGGGDGNARSSSSSSSSSSNSISNSSSNNKNANVLEQYGKLAEALEDA
EHQGTLPDLLSLLAPSRWLASQQLPPPSLLITNLWKVMTWHADPVLAHAS
YLNLRKLMPMKGREGGKEGGWRLEGALIQELFRGFGVFVGGKEAEEGEEE
GGKEDGGGGGCDVTSPLLVSSSSSLPSSSSSSWGYPHPVLRRAIDTTHLD
HAVDHDEDDEEEEGGKEDKEAREGGKEGTEGGVCGGGGATGNGLGQDKD*

mRNA from alignment at scaffold_20:129763..131901-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7504 ID=mRNA_7504|Name=jgi.p|Nanoce1779_2|641186|organism=Nannochloropsis oceanica|type=mRNA|length=2139bp|location=Sequence derived from alignment at scaffold_20:129763..131901- (Nannochloropsis oceanica)
ATGAGCCTCGAGGAGGAGGAGGAAGACCTTCTGGCCGATTTTATGGCCCC
TCTTGCAGCCTCTGCTAAGCGAAAAACGAGCACCAGCAGCAGCTACGTGC
CTCTCTCCCTTTCCTCCATCGATGCCACCAAGAAGGACACGTTTTCTCTG
AGTAATTTGATAAAGGAGCAAGAGAAGGAGAAGCGCGCTTTGGAGCATCT
AAGGGGTGACGGGGGAGGAGAAGAGGAGGGAGGAGGAGGGACGAGGGTGT
CTTCAGTGTCGTCGTTTGACAGGATCGTGAAGACGGAGGAGATGTTGTTG
AGTATGAGTAGTAGTGAGAGTGAGGGAGAGATGGAGGAGGAGGAAGATAG
GCAAGATAAGGGAAAAGAAAGGGAAAAGCAGGGAAAGAAAAAAACGAAGA
ATGGGTTTGGTAACTTCGTCTATAGGAATGGCGGGGAAAGAGGGGAGGAG
GACAAGGAGTCAGACCTGGACATGGAGAGGGAGGAATTTGTGGAGTGGTT
GGGTCTTACAAGCGTCTTCACCATGCGTCAGGAAGATGATGGGGAGGAGG
GGGAATGGGGAGGCATGGTGGTGCCTTCCCCTCTTCTTCCTTCGAGCGGC
AGAGGGAGAGGGGGAGGGGATGGCAACGCACGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAACAGCATCAGCAACAGCAGCAGTAACAATAAGAACG
CGAATGTTCTCGAGCAGTACGGGAAACTGGCCGAAGCTCTGGAAGATGCA
GAGCACCAAGGGACCCTCCCCGACCTCCTTTCCCTTCTTGCTCCTTCACG
CTGGCTTGCCTCGCAGCAGCTTCCCCCTCCCTCCCTCCTCATCACCAACC
TTTGGAAGGTGATGACGTGGCACGCTGACCCTGTCTTGGCACATGCTTCA
TATTTGAATTTAAGGAAGTTGATGCCGATGAAGGGGAGGGAGGGAGGGAA
GGAGGGAGGGTGGAGATTGGAAGGAGCGTTGATCCAGGAACTCTTCAGGG
GATTCGGGGTTTTTGTGGGAGGAAAGGAAGCGGAGGAGGGCGAGGAAGAG
GGAGGGAAGGAGGACGGGGGAGGAGGTGGGTGCGATGTGACCTCCCCTTT
GTTGGTTTCGTCATCGTCCTCGCTCCCTTCCTCGTCCTCGTCCTCCTGGG
GCTACCCCCACCCTGTGTTGAGGCGCGCGATAGACACAACCCACTTAGAC
CACGCCGTTGATCACGACGAGGACGATGAAGAGGAGGAAGGCGGGAAGGA
GGACAAGGTTCCACCACCTCCGGCACTGGACAAGAGCAGCATTCCGCCCA
CCGGCAACCTCCGAGACCTTTTTATCTCCCTCTCCTCCTGCTTCTTCTCC
TCCTCCTCCTCCTGCTTCTCCTCCTCCTCCTCCTGCTTCTCTCCCTCCTC
CTCCTCCCCTCTCTCCCTTTCCCCCTGTTTCACCACCTCCCTCCTCCACA
CCCTCCTCCTCCTCACTCTTGACCGATACATCCAAGCAGACTGCCCCTCC
TCCCTCCGCACCTGCATCTCCGCCCTCCTCAACTCGCCCTCTCTCCCCCC
TTCCCTTTGGCCCTCGCCCACCCTCCCTGCCCTAATTGCCGGCTTGGTGA
AGGAGGAGGATGTGAGGCTTGGTGTCGCGTCTTTGCTCCACATCTCTCGG
TGCATCTCTCTGTCCACCGAGAGGGGGAAGGACCTCGTCACCGCCCTGCT
CCGGACCATCCTAGAGGACAGGCTCCTCCCCCCCTCCCTCCCCCCCCTCC
CTCCCTTCCCCTCCCTCCCTCCCTTCTGCCCTCGTCCTCCTCCAGTCCCT
CCCAACTGGAACAGAGGAAGAGCGTCAAGCATATTTCCTCTTTCTGCTCG
AAAAAATTGAAGAGGGAGAGCTCGCTGGTGATTTCCTTGCTCCCACCTCG
TCATCCCTCCCTCCCTCATCGAACGGAAAAGCAAAGGTAGGAGGGAGAGA
GAAAAGGAGGGGTACCGGTGAGCGCACGCTGTTCTTCGCCATCTTTATTG
CCTTGTGGGTGCAAATGAGCTTGACAAGCCTCCCCCGGCCGTCGAGGAAG
CGAGGGAAGGAGGGAAGGAAGGGACAGAGGGAGGGGTATGCGGGGGAGGT
GGCGCGACGGGTAATGGGCTTGGACAGGACAAGGATTAG

Coding sequence (CDS) from alignment at scaffold_20:129763..131901-

>mRNA_7504 ID=mRNA_7504|Name=jgi.p|Nanoce1779_2|641186|organism=Nannochloropsis oceanica|type=CDS|length=2700bp|location=Sequence derived from alignment at scaffold_20:129763..131901- (Nannochloropsis oceanica)
GAAGCGAGGGAAGGAGGGAAGGAAGGGACAGAGGGAGGGGTATGCGGGGG
AGGTGGCGCGACGGGTAATGGGCTTGGACAGGACAAGGATTAGATGAGCC
TCGAGGAGGAGGAGGAAGACCTTCTGGCCGATTTTATGGCCCCTCTTGCA
GCCTCTGCTAAGCGAAAAACGAGCACCAGCAGCAGCTACGTGCCTCTCTC
CCTTTCCTCCATCGATGCCACCAAGAAGGACACGTTTTCTCTGAGTAATT
TGATAAAGGAGCAAGAGAAGGAGAAGCGCGCTTTGGAGCATCTAAGGGGT
GACGGGGGAGGAGAAGAGGAGGGAGGAGGAGGGACGAGGGTGTCTTCAGT
GTCGTCGTTTGACAGGATCGTGAAGACGGAGGAGATGTTGTTGAGTATGA
GTAGTAGTGAGAGTGAGGGAGAGATGGAGGAGGAGGAAGATAGGCAAGAT
AAGGGAAAAGAAAGGGAAAAGCAGGGAAAGAAAAAAACGAAGAATGGGTT
TGGTAACTTCGTCTATAGGAATGGCGGGGAAAGAGGGGAGGAGGACAAGG
AGTCAGACCTGGACATGGAGAGGGAGGAATTTGTGGAGTGGTTGGGTCTT
ACAAGCGTCTTCACCATGCGTCAGGAAGATGATGGGGAGGAGGGGGAATG
GGGAGGCATGGTGGTGCCTTCCCCTCTTCTTCCTTCGAGCGGCAGAGGGA
GAGGGGGAGGGGATGGCAACGCACGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAACAGCATCAGCAACAGCAGCAGTAACAATAAGAACGCGAATGT
TCTCGAGCAGTACGGGAAACTGGCCGAAGCTCTGGAAGATGCAGAGCACC
AAGGGACCCTCCCCGACCTCCTTTCCCTTCTTGCTCCTTCACGCTGGCTT
GCCTCGCAGCAGCTTCCCCCTCCCTCCCTCCTCATCACCAACCTTTGGAA
GGTGATGACGTGGCACGCTGACCCTGTCTTGGCACATGCTTCATATTTGA
ATTTAAGGAAGTTGATGCCGATGAAGGGGAGGGAGGGAGGGAAGGAGGGA
GGGTGGAGATTGGAAGGAGCGTTGATCCAGGAACTCTTCAGGGGATTCGG
GGTTTTTGTGGGAGGAAAGGAAGCGGAGGAGGGCGAGGAAGAGGGAGGGA
AGGAGGACGGGGGAGGAGGTGGGTGCGATGTGACCTCCCCTTTGTTGGTT
TCGTCATCGTCCTCGCTCCCTTCCTCGTCCTCGTCCTCCTGGGGCTACCC
CCACCCTGTGTTGAGGCGCGCGATAGACACAACCCACTTAGACCACGCCG
TTGATCACGACGAGGACGATGAAGAGGAGGAAGGCGGGAAGGAGGACAAG
GAAGCGAGGGAAGGAGGGAAGGAAGGGACAGAGGGAGGGGTATGCGGGGG
AGGTGGCGCGACGGGTAATGGGCTTGGACAGGACAAGGATTAGATGAGCC
TCGAGGAGGAGGAGGAAGACCTTCTGGCCGATTTTATGGCCCCTCTTGCA
GCCTCTGCTAAGCGAAAAACGAGCACCAGCAGCAGCTACGTGCCTCTCTC
CCTTTCCTCCATCGATGCCACCAAGAAGGACACGTTTTCTCTGAGTAATT
TGATAAAGGAGCAAGAGAAGGAGAAGCGCGCTTTGGAGCATCTAAGGGGT
GACGGGGGAGGAGAAGAGGAGGGAGGAGGAGGGACGAGGGTGTCTTCAGT
GTCGTCGTTTGACAGGATCGTGAAGACGGAGGAGATGTTGTTGAGTATGA
GTAGTAGTGAGAGTGAGGGAGAGATGGAGGAGGAGGAAGATAGGCAAGAT
AAGGGAAAAGAAAGGGAAAAGCAGGGAAAGAAAAAAACGAAGAATGGGTT
TGGTAACTTCGTCTATAGGAATGGCGGGGAAAGAGGGGAGGAGGACAAGG
AGTCAGACCTGGACATGGAGAGGGAGGAATTTGTGGAGTGGTTGGGTCTT
ACAAGCGTCTTCACCATGCGTCAGGAAGATGATGGGGAGGAGGGGGAATG
GGGAGGCATGGTGGTGCCTTCCCCTCTTCTTCCTTCGAGCGGCAGAGGGA
GAGGGGGAGGGGATGGCAACGCACGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAACAGCATCAGCAACAGCAGCAGTAACAATAAGAACGCGAATGT
TCTCGAGCAGTACGGGAAACTGGCCGAAGCTCTGGAAGATGCAGAGCACC
AAGGGACCCTCCCCGACCTCCTTTCCCTTCTTGCTCCTTCACGCTGGCTT
GCCTCGCAGCAGCTTCCCCCTCCCTCCCTCCTCATCACCAACCTTTGGAA
GGTGATGACGTGGCACGCTGACCCTGTCTTGGCACATGCTTCATATTTGA
ATTTAAGGAAGTTGATGCCGATGAAGGGGAGGGAGGGAGGGAAGGAGGGA
GGGTGGAGATTGGAAGGAGCGTTGATCCAGGAACTCTTCAGGGGATTCGG
GGTTTTTGTGGGAGGAAAGGAAGCGGAGGAGGGCGAGGAAGAGGGAGGGA
AGGAGGACGGGGGAGGAGGTGGGTGCGATGTGACCTCCCCTTTGTTGGTT
TCGTCATCGTCCTCGCTCCCTTCCTCGTCCTCGTCCTCCTGGGGCTACCC
CCACCCTGTGTTGAGGCGCGCGATAGACACAACCCACTTAGACCACGCCG
TTGATCACGACGAGGACGATGAAGAGGAGGAAGGCGGGAAGGAGGACAAG

Synonyms

Publications